Wall clock time and date at job start Tue Mar 31 2020 15:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30260 * 125.61801 * 2 1 4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.16042 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47591 * 275.02595 * 5 4 3 7 7 C 1.46899 * 110.99997 * 66.04840 * 6 5 4 8 8 C 1.46903 * 111.00343 * 190.00530 * 6 5 4 9 9 H 1.08998 * 109.47045 * 54.99518 * 8 6 5 10 10 C 1.53003 * 109.46707 * 294.99961 * 8 6 5 11 11 C 1.52996 * 109.47441 * 175.00040 * 8 6 5 12 12 N 1.46505 * 109.46767 * 304.99712 * 11 8 6 13 13 C 1.34782 * 119.99649 * 179.97438 * 12 11 8 14 14 O 1.21277 * 120.00027 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99735 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.47154 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00307 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00249 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00125 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46737 * 90.00531 * 21 19 17 23 23 H 1.48502 * 109.47014 * 209.99975 * 21 19 17 24 24 H 1.48493 * 109.47340 * 330.00362 * 21 19 17 25 25 C 1.34330 * 107.66950 * 359.97438 * 4 3 2 26 26 O 1.33967 * 125.62312 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46498 * 90.00168 * 1 2 3 28 28 H 1.09000 * 109.46598 * 209.99572 * 1 2 3 29 29 H 1.08993 * 109.47221 * 329.99839 * 1 2 3 30 30 H 1.09003 * 109.47426 * 35.03204 * 5 4 3 31 31 H 1.09006 * 109.47012 * 155.02282 * 5 4 3 32 32 H 1.08994 * 109.47259 * 60.00197 * 7 6 5 33 33 H 1.09000 * 109.47135 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47054 * 300.00488 * 7 6 5 35 35 H 1.09000 * 109.46885 * 180.02562 * 10 8 6 36 36 H 1.09006 * 109.47013 * 299.99886 * 10 8 6 37 37 H 1.09002 * 109.47316 * 60.00198 * 10 8 6 38 38 H 1.08997 * 109.47090 * 64.99319 * 11 8 6 39 39 H 1.08996 * 109.47427 * 184.99796 * 11 8 6 40 40 H 0.96999 * 120.00212 * 0.02562 * 12 11 8 41 41 H 1.09002 * 109.47203 * 300.00030 * 15 13 12 42 42 H 1.09002 * 109.47515 * 59.99662 * 15 13 12 43 43 H 0.96993 * 120.00112 * 180.02562 * 20 19 17 44 44 H 1.08000 * 126.44082 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0002 6 7 5.0760 1.9630 -1.3796 7 6 4.0110 2.7986 -1.9499 8 6 6.3745 2.6467 -1.4465 9 1 7.1418 2.0137 -1.0009 10 6 6.2950 3.9684 -0.6798 11 6 6.7292 2.9258 -2.9084 12 7 6.6884 1.6739 -3.6683 13 6 6.9676 1.6766 -4.9869 14 8 7.2522 2.7154 -5.5443 15 6 6.9251 0.3890 -5.7687 16 16 7.3448 0.7190 -7.4981 17 6 7.2223 -0.9097 -8.1589 18 1 6.9534 -1.7346 -7.5158 19 6 7.4724 -1.1328 -9.5059 20 7 7.3803 -2.3495 -9.9997 21 14 7.9381 0.2938 -10.6181 22 1 9.4145 0.4540 -10.6257 23 1 7.4628 0.0211 -11.9983 24 1 7.3075 1.5404 -10.1147 25 6 3.5698 -0.6757 0.0015 26 8 2.2873 -1.0890 0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 4.5419 2.4642 0.5895 31 1 5.6070 1.0465 0.4348 32 1 3.8961 3.7009 -1.3493 33 1 4.2724 3.0730 -2.9719 34 1 3.0739 2.2418 -1.9519 35 1 7.2583 4.4759 -0.7298 36 1 5.5276 4.6014 -1.1254 37 1 6.0423 3.7696 0.3618 38 1 6.0107 3.6295 -3.3287 39 1 7.7307 3.3522 -2.9643 40 1 6.4597 0.8432 -3.2227 41 1 7.6436 -0.3149 -5.3487 42 1 5.9235 -0.0373 -5.7125 43 1 7.5554 -2.5055 -10.9408 44 1 4.4470 -1.3058 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755292476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:52 Heat of formation + Delta-G solvation = -36.782804 kcal Electronic energy + Delta-G solvation = -25139.387218 eV Core-core repulsion = 21411.861422 eV Total energy + Delta-G solvation = -3727.525796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.25489 -40.80521 -39.43591 -36.17905 -35.16965 -34.66795 -33.44439 -32.04067 -30.73614 -29.55858 -27.90348 -27.65597 -26.92438 -25.54031 -22.56394 -21.95582 -21.68217 -20.81446 -19.80377 -18.07135 -17.92238 -17.74922 -17.36264 -17.25642 -17.05345 -16.36944 -16.02247 -15.89074 -15.59474 -15.04169 -14.94384 -14.79690 -14.67154 -14.30236 -14.07616 -13.87673 -13.52458 -13.43603 -13.34238 -13.23135 -13.07920 -13.02860 -12.92062 -12.61501 -12.45366 -12.27314 -12.07111 -11.86968 -11.74680 -11.49787 -11.16781 -10.97522 -10.52936 -10.04390 -9.69751 -9.32016 -8.98813 -8.51357 -6.21852 0.55191 1.00226 1.31454 1.47474 1.56882 1.60731 1.62941 1.93144 2.24650 2.31531 2.73097 2.86813 2.95330 3.21398 3.70443 3.77494 3.93242 4.04062 4.11477 4.24573 4.30406 4.33903 4.38913 4.48579 4.56404 4.61977 4.63022 4.63925 4.69594 4.74682 4.79890 4.87648 4.98117 5.01736 5.10078 5.10726 5.27869 5.40611 5.48257 5.71142 5.95422 6.04735 6.11657 6.57303 6.81407 6.93870 7.26800 8.61237 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002631 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.148889 B =10640.193988 C =12117.306455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.177 3.823 3 N -0.508 5.508 4 C -0.028 4.028 5 C 0.140 3.860 6 N -0.534 5.534 7 C 0.031 3.969 8 C 0.079 3.921 9 H 0.115 0.885 10 C -0.181 4.181 11 C 0.129 3.871 12 N -0.699 5.699 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.109 4.109 16 S -0.175 6.175 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.045 3.955 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.259 1.259 24 H -0.237 1.237 25 C -0.059 4.059 26 O -0.217 6.217 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.418 0.582 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.277 0.723 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 7.234 28.661 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.030 4.030 3 N -0.239 5.239 4 C -0.147 4.147 5 C 0.012 3.988 6 N -0.258 5.258 7 C -0.117 4.117 8 C -0.030 4.030 9 H 0.133 0.867 10 C -0.240 4.240 11 C 0.005 3.995 12 N -0.352 5.352 13 C 0.318 3.682 14 O -0.447 6.447 15 C -0.260 4.260 16 S 0.051 5.949 17 C -0.676 4.676 18 H 0.079 0.921 19 C -0.160 4.160 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.130 4.130 26 O -0.104 6.104 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.136 0.864 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.138 8.972 27.347 30.196 hybrid contribution -0.090 -1.469 0.301 1.502 sum -9.228 7.503 27.647 30.097 Atomic orbital electron populations 1.20445 0.79120 1.06239 1.05594 1.27085 0.97886 0.78368 0.99679 1.70336 1.02631 1.31224 1.19709 1.21826 0.92882 0.93481 1.06490 1.20376 0.92661 0.96508 0.89221 1.62163 1.02307 1.42291 1.19088 1.22277 0.94614 0.95822 0.99018 1.21979 0.91737 0.95777 0.93476 0.86742 1.22354 1.03445 0.97322 1.00853 1.21496 1.01473 0.85908 0.90672 1.45586 1.69935 1.12543 1.07108 1.19918 0.76114 0.89215 0.82940 1.90678 1.49307 1.34427 1.70332 1.23241 1.06660 0.99332 0.96768 1.84677 1.91907 1.13445 1.04866 1.22462 1.54079 0.92854 0.98167 0.92071 1.25575 0.93611 0.98284 0.98573 1.70016 1.48365 1.21816 1.15408 0.85857 0.80247 0.80889 0.79316 1.18568 1.18328 1.16135 1.25390 0.85182 0.96374 1.06067 1.84464 1.17724 1.38214 1.69950 0.88185 0.87629 0.87425 0.92878 0.86431 0.94587 0.92629 0.92534 0.90536 0.92790 0.90740 0.92906 0.90975 0.74456 0.86905 0.87472 0.91358 0.74001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 71.24 0.75 0.24 16 2 C 0.18 3.15 8.34 88.34 0.74 3.88 16 3 N -0.51 -10.55 10.29 -291.98 -3.01 -13.55 16 4 C -0.03 -0.49 5.83 41.26 0.24 -0.25 16 5 C 0.14 1.82 4.95 85.56 0.42 2.25 16 6 N -0.53 -8.25 4.18 -901.63 -3.77 -12.02 16 7 C 0.03 0.61 8.54 127.69 1.09 1.70 16 8 C 0.08 1.03 2.50 44.91 0.11 1.14 16 9 H 0.11 1.08 8.03 -2.39 -0.02 1.06 16 10 C -0.18 -1.99 8.50 71.98 0.61 -1.38 16 11 C 0.13 2.63 4.70 86.38 0.41 3.03 16 12 N -0.70 -17.09 5.39 -463.07 -2.50 -19.59 16 13 C 0.53 18.80 7.85 87.65 0.69 19.49 16 14 O -0.57 -24.77 15.86 -3.02 -0.05 -24.82 16 15 C -0.11 -4.24 6.16 71.23 0.44 -3.80 16 16 S -0.18 -9.05 18.55 -56.49 -1.05 -10.09 16 17 C -0.53 -31.21 10.04 67.95 0.68 -30.53 16 18 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 19 C 0.04 2.66 5.50 84.86 0.47 3.13 16 20 N -0.92 -56.51 13.97 21.65 0.30 -56.21 16 21 Si 0.92 45.58 27.74 68.60 1.90 47.48 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 25 C -0.06 -0.92 12.08 66.93 0.81 -0.11 16 26 O -0.22 -4.04 10.77 -3.68 -0.04 -4.08 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.72 6.94 -2.39 -0.02 0.71 16 31 H 0.12 0.89 8.00 -2.38 -0.02 0.87 16 32 H 0.04 0.66 6.51 -2.39 -0.02 0.64 16 33 H 0.05 1.25 6.24 -2.39 -0.01 1.24 16 34 H 0.06 1.32 6.53 -2.39 -0.02 1.30 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.73 6.47 -2.38 -0.02 0.71 16 37 H 0.07 0.67 6.75 -2.39 -0.02 0.66 16 38 H 0.05 1.26 6.61 -2.39 -0.02 1.25 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.42 8.34 8.14 -92.71 -0.75 7.59 16 41 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 43 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.24 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -79.24 374.82 -0.52 -79.76 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.23 Total: 14.32 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 7.45 Total: -1.21 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -8.97 Total: -101.37 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.09 Total: -28.89 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.09 kcal Total: -79.24 -0.52 -79.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755292476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.976 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds