Wall clock time and date at job start Tue Mar 31 2020 15:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34481 * 126.16780 * 2 1 4 4 C 1.30254 * 108.70380 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75849 * 359.74120 * 4 3 2 6 6 C 1.34334 * 126.16604 * 180.02562 * 2 1 3 7 7 C 1.50690 * 126.44406 * 359.97438 * 6 2 1 8 8 N 1.46898 * 109.47255 * 89.99903 * 7 6 2 9 9 C 1.46903 * 111.00260 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46828 * 323.06225 * 9 8 7 11 11 C 1.53000 * 109.46960 * 83.05547 * 9 8 7 12 12 C 1.53001 * 109.47392 * 203.06084 * 9 8 7 13 13 N 1.46502 * 109.47151 * 59.39277 * 12 9 8 14 14 C 1.46500 * 119.99960 * 264.15364 * 13 12 9 15 15 C 1.34768 * 119.99935 * 84.15452 * 13 12 9 16 16 O 1.21282 * 120.00229 * 359.97438 * 15 13 12 17 17 C 1.50705 * 120.00034 * 180.02562 * 15 13 12 18 18 S 1.81002 * 109.47038 * 179.97438 * 17 15 13 19 19 C 1.76201 * 99.99661 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99960 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46814 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47342 * 119.99996 * 23 21 19 26 26 H 1.48504 * 109.46886 * 239.99700 * 23 21 19 27 27 H 1.08997 * 109.46632 * 269.99562 * 1 2 3 28 28 H 1.09000 * 109.47068 * 29.99629 * 1 2 3 29 29 H 1.08999 * 109.46991 * 149.99648 * 1 2 3 30 30 H 1.08002 * 125.61564 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47338 * 330.00258 * 7 6 2 32 32 H 1.09004 * 109.47405 * 210.00064 * 7 6 2 33 33 H 1.00902 * 110.99840 * 56.05024 * 8 7 6 34 34 H 1.09005 * 109.46896 * 179.97438 * 11 9 8 35 35 H 1.08993 * 109.47587 * 300.00603 * 11 9 8 36 36 H 1.09007 * 109.46796 * 60.00634 * 11 9 8 37 37 H 1.08996 * 109.47506 * 179.39761 * 12 9 8 38 38 H 1.09005 * 109.46599 * 299.39085 * 12 9 8 39 39 H 1.08999 * 109.47438 * 95.25889 * 14 13 12 40 40 H 1.08995 * 109.47220 * 215.26663 * 14 13 12 41 41 H 1.09001 * 109.46905 * 335.26285 * 14 13 12 42 42 H 1.08998 * 109.47031 * 299.99555 * 17 15 13 43 43 H 1.09003 * 109.47017 * 59.99742 * 17 15 13 44 44 H 0.96999 * 119.99990 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 8 3.5734 -0.6446 0.0066 6 6 2.2997 -1.0845 -0.0005 7 6 1.8494 -2.5225 -0.0006 8 7 1.7025 -2.9896 -1.3856 9 6 1.2642 -4.3911 -1.4249 10 1 1.7391 -4.9432 -0.6139 11 6 -0.2559 -4.4548 -1.2634 12 6 1.6611 -5.0123 -2.7656 13 7 3.1154 -4.9383 -2.9266 14 6 3.7138 -3.8329 -3.6792 15 6 3.9028 -5.8870 -2.3824 16 8 3.4075 -6.8019 -1.7589 17 6 5.3988 -5.8106 -2.5475 18 16 6.1709 -7.2168 -1.7092 19 6 7.8667 -6.8849 -2.0539 20 1 8.1400 -6.0145 -2.6320 21 6 8.8513 -7.7427 -1.5834 22 7 8.5182 -8.8037 -0.8793 23 14 10.6491 -7.3904 -1.9483 24 1 10.7566 -6.1460 -2.7514 25 1 11.3895 -7.2221 -0.6721 26 1 11.2304 -8.5237 -2.7119 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 4.4066 1.3435 0.0003 31 1 0.8916 -2.6034 0.5135 32 1 2.5903 -3.1354 0.5129 33 1 2.5602 -2.8647 -1.9021 34 1 -0.5812 -5.4947 -1.2930 35 1 -0.5387 -4.0123 -0.3083 36 1 -0.7309 -3.9027 -2.0745 37 1 1.3454 -6.0552 -2.7906 38 1 1.1776 -4.4668 -3.5761 39 1 4.0152 -3.0448 -2.9894 40 1 4.5870 -4.1940 -4.2225 41 1 2.9841 -3.4377 -4.3860 42 1 5.6491 -5.8373 -3.6080 43 1 5.7655 -4.8816 -2.1108 44 1 9.2063 -9.4030 -0.5501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755578523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:58 Heat of formation + Delta-G solvation = -10.174817 kcal Electronic energy + Delta-G solvation = -25636.776823 eV Core-core repulsion = 21910.404835 eV Total energy + Delta-G solvation = -3726.371987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53474 -39.82753 -37.43778 -35.38565 -34.99538 -32.95014 -32.46400 -30.81232 -29.47767 -27.90366 -27.29004 -25.89778 -25.48089 -24.68338 -22.33496 -21.05542 -20.98289 -19.24633 -17.73128 -17.43229 -16.95134 -16.63890 -16.54250 -16.10774 -15.46478 -15.14678 -14.88421 -14.83727 -14.27002 -13.96285 -13.49046 -13.41663 -13.30006 -13.05299 -12.96515 -12.77565 -12.71101 -12.61439 -12.34940 -12.19302 -11.95956 -11.87604 -11.69258 -11.21153 -11.18637 -11.09930 -11.05416 -10.78526 -10.71512 -9.83664 -9.45561 -9.10801 -9.00675 -8.71206 -8.63332 -8.27260 -6.54558 -6.25350 -3.96237 1.21304 2.44306 2.54096 2.86076 2.95731 3.18889 3.23177 3.28420 3.54994 3.89904 3.99957 4.16665 4.45424 4.64291 4.68390 4.79454 4.92209 4.98568 5.09933 5.11115 5.13460 5.21669 5.29894 5.36629 5.39454 5.43067 5.52655 5.53718 5.59689 5.64833 5.72958 5.73906 5.76983 5.84778 5.86150 6.04423 6.07945 6.14477 6.54910 6.64523 7.03335 7.42050 7.50299 7.56456 8.31818 8.46004 9.20205 10.82137 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.002995 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.563563 B = 9346.672409 C =10755.467721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.004 3.996 3 N -0.489 5.489 4 C 0.172 3.828 5 O -0.202 6.202 6 C -0.045 4.045 7 C 0.143 3.857 8 N -0.680 5.680 9 C 0.064 3.936 10 H 0.057 0.943 11 C -0.137 4.137 12 C 0.118 3.882 13 N -0.630 5.630 14 C 0.079 3.921 15 C 0.532 3.468 16 O -0.512 6.512 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.249 0.751 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.346 0.654 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 17.063 -2.069 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 N -0.219 5.219 4 C -0.055 4.055 5 O -0.088 6.088 6 C -0.098 4.098 7 C 0.014 3.986 8 N -0.315 5.315 9 C -0.047 4.047 10 H 0.075 0.925 11 C -0.195 4.195 12 C -0.005 4.005 13 N -0.366 5.366 14 C -0.065 4.065 15 C 0.320 3.680 16 O -0.386 6.386 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.561 16.370 -1.128 24.034 hybrid contribution 3.093 0.471 -0.684 3.202 sum -14.468 16.841 -1.811 22.276 Atomic orbital electron populations 1.20133 0.86446 1.03716 1.02578 1.21488 0.97987 0.87315 1.04871 1.70369 1.01428 1.31834 1.18258 1.28015 0.97566 0.79335 1.00561 1.84464 1.30243 1.24675 1.69404 1.23055 0.80706 0.97720 1.08354 1.20316 1.01024 0.85534 0.91681 1.60773 1.38568 1.20383 1.11811 1.22003 0.96673 0.87374 0.98619 0.92456 1.21732 0.93835 1.01789 1.02174 1.21638 0.80051 1.02372 0.96461 1.47973 1.06431 1.26556 1.55654 1.21839 0.99667 0.89084 0.95869 1.20387 0.88812 0.80850 0.77961 1.90699 1.75583 1.32997 1.39302 1.23564 0.93684 1.07267 1.05620 1.85389 1.02390 1.26867 1.68869 1.22889 0.91317 1.13790 1.40271 0.90906 1.24997 0.99595 0.94453 0.94545 1.70025 1.33920 1.12687 1.33620 0.86115 0.82732 0.78405 0.78243 1.19599 1.20544 1.20531 0.91050 0.90786 0.89978 0.73542 0.87666 0.92922 0.83288 0.91961 0.92570 0.91813 0.89232 0.89749 0.93036 0.90591 0.90706 0.89188 0.89423 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.05 36.01 0.36 -0.22 16 2 C 0.00 0.04 7.11 -82.81 -0.59 -0.55 16 3 N -0.49 -5.70 11.29 -11.18 -0.13 -5.82 16 4 C 0.17 1.65 13.23 52.09 0.69 2.34 16 5 O -0.20 -2.36 10.78 5.36 0.06 -2.30 16 6 C -0.05 -0.51 6.90 -35.69 -0.25 -0.75 16 7 C 0.14 1.47 5.64 -4.98 -0.03 1.44 16 8 N -0.68 -6.90 6.29 -107.99 -0.68 -7.58 16 9 C 0.06 0.67 2.87 -67.71 -0.19 0.48 16 10 H 0.06 0.77 7.83 -51.93 -0.41 0.37 16 11 C -0.14 -1.13 9.39 37.16 0.35 -0.78 16 12 C 0.12 1.31 5.04 -4.04 -0.02 1.29 16 13 N -0.63 -8.28 2.55 -181.57 -0.46 -8.74 16 14 C 0.08 0.79 9.07 59.85 0.54 1.33 16 15 C 0.53 9.72 7.65 -10.99 -0.08 9.64 16 16 O -0.51 -11.22 15.54 5.56 0.09 -11.14 16 17 C -0.15 -3.01 4.78 36.01 0.17 -2.84 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.11 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 30 H 0.25 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.11 0.89 6.96 -51.93 -0.36 0.53 16 32 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.35 3.78 5.20 -39.29 -0.20 3.58 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.43 7.33 -51.93 -0.38 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.11 7.60 -51.93 -0.39 0.71 16 38 H 0.08 0.74 7.78 -51.93 -0.40 0.33 16 39 H 0.05 0.49 6.83 -51.93 -0.35 0.14 16 40 H 0.08 0.77 6.66 -51.93 -0.35 0.42 16 41 H 0.07 0.57 7.78 -51.93 -0.40 0.16 16 42 H 0.09 1.67 7.41 -51.92 -0.38 1.28 16 43 H 0.09 1.65 8.11 -51.91 -0.42 1.22 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -35.60 379.93 -7.29 -42.89 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.54 Total: 1.32 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 1.15 Total: -1.45 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.54 Total: -47.42 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.14 Total: -13.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.60 -7.29 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755578523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.719 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds