Wall clock time and date at job start Tue Mar 31 2020 15:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34481 * 126.16973 * 2 1 4 4 C 1.30255 * 108.70376 * 180.26908 * 3 2 1 5 5 O 1.33969 * 108.76064 * 359.75373 * 4 3 2 6 6 C 1.34332 * 126.16356 * 179.85273 * 2 1 3 7 7 C 1.50702 * 126.44446 * 0.02562 * 6 2 1 8 8 N 1.46892 * 109.46988 * 89.71420 * 7 6 2 9 9 C 1.46900 * 111.00205 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.46911 * 34.99998 * 9 8 7 11 11 C 1.52995 * 109.47272 * 274.99937 * 9 8 7 12 12 C 1.52999 * 109.47495 * 154.99436 * 9 8 7 13 13 N 1.46499 * 109.47276 * 305.00416 * 12 9 8 14 14 C 1.46499 * 120.00136 * 269.99459 * 13 12 9 15 15 C 1.34784 * 119.99971 * 89.99654 * 13 12 9 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 13 12 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 13 12 18 18 S 1.81006 * 109.46975 * 180.02562 * 17 15 13 19 19 C 1.76200 * 100.00155 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47316 * 89.99758 * 23 21 19 25 25 H 1.48498 * 109.47135 * 209.99728 * 23 21 19 26 26 H 1.48505 * 109.47071 * 329.99777 * 23 21 19 27 27 H 1.08997 * 109.46879 * 270.14560 * 1 2 3 28 28 H 1.09004 * 109.46613 * 30.14874 * 1 2 3 29 29 H 1.08999 * 109.46908 * 150.14598 * 1 2 3 30 30 H 1.07995 * 125.61831 * 179.78329 * 4 3 2 31 31 H 1.08995 * 109.46824 * 329.70923 * 7 6 2 32 32 H 1.09000 * 109.47003 * 209.71142 * 7 6 2 33 33 H 1.00902 * 111.00425 * 56.04069 * 8 7 6 34 34 H 1.08994 * 109.47262 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47202 * 299.99883 * 11 9 8 36 36 H 1.09009 * 109.47062 * 59.99460 * 11 9 8 37 37 H 1.08998 * 109.47074 * 184.99991 * 12 9 8 38 38 H 1.09008 * 109.46412 * 64.99997 * 12 9 8 39 39 H 1.08996 * 109.47008 * 270.00543 * 14 13 12 40 40 H 1.08997 * 109.46865 * 30.00228 * 14 13 12 41 41 H 1.08998 * 109.47058 * 149.99741 * 14 13 12 42 42 H 1.09005 * 109.47403 * 300.00056 * 17 15 13 43 43 H 1.09002 * 109.47422 * 60.00295 * 17 15 13 44 44 H 0.97005 * 120.00072 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0856 0.0000 4 6 3.5432 0.6947 -0.0058 5 8 3.5735 -0.6447 -0.0042 6 6 2.2997 -1.0845 0.0028 7 6 1.8493 -2.5226 0.0059 8 7 1.6968 -2.9910 -1.3779 9 6 1.2571 -4.3922 -1.4141 10 1 0.5828 -4.5830 -0.5793 11 6 2.4750 -5.3118 -1.3065 12 6 0.5276 -4.6640 -2.7312 13 7 -0.5675 -3.7038 -2.8901 14 6 -1.9002 -4.0200 -2.3705 15 6 -0.3488 -2.5295 -3.5145 16 8 0.7557 -2.2657 -3.9404 17 6 -1.4753 -1.5422 -3.6785 18 16 -0.8704 -0.0758 -4.5504 19 6 -2.3492 0.8807 -4.6032 20 1 -3.2582 0.4941 -4.1664 21 6 -2.3460 2.1308 -5.2061 22 7 -1.2380 2.6021 -5.7379 23 14 -3.9136 3.1452 -5.2614 24 1 -3.9909 4.0033 -4.0520 25 1 -3.9072 4.0002 -6.4755 26 1 -5.0888 2.2382 -5.3008 27 1 -0.3633 0.0026 1.0276 28 1 -0.3633 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 4.4066 1.3434 -0.0106 31 1 0.8937 -2.6029 0.5241 32 1 2.5922 -3.1349 0.5170 33 1 2.5524 -2.8666 -1.8982 34 1 2.1488 -6.3515 -1.3329 35 1 3.1494 -5.1210 -2.1414 36 1 2.9948 -5.1182 -0.3681 37 1 0.1243 -5.6766 -2.7210 38 1 1.2260 -4.5593 -3.5616 39 1 -2.4787 -4.5303 -3.1405 40 1 -1.8059 -4.6670 -1.4984 41 1 -2.4073 -3.0982 -2.0858 42 1 -2.2795 -2.0007 -4.2540 43 1 -1.8505 -1.2526 -2.6968 44 1 -1.2356 3.4760 -6.1589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755578524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:03 Heat of formation + Delta-G solvation = -6.591980 kcal Electronic energy + Delta-G solvation = -26568.651755 eV Core-core repulsion = 22842.435132 eV Total energy + Delta-G solvation = -3726.216624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.12942 -39.39768 -37.21922 -34.99156 -34.81573 -32.70236 -32.33782 -30.33702 -29.25517 -27.42675 -27.12228 -25.55393 -25.16141 -24.70747 -21.96991 -21.14882 -20.61200 -19.05707 -17.55569 -17.05288 -16.64710 -16.39738 -15.89076 -15.55858 -15.37233 -14.94059 -14.75048 -14.71474 -13.90542 -13.81867 -13.25995 -13.01814 -12.98412 -12.91418 -12.79577 -12.63743 -12.45590 -12.31941 -12.19770 -12.07457 -11.80595 -11.74869 -11.43839 -11.06683 -10.99618 -10.92546 -10.76127 -10.68405 -10.28368 -9.70305 -9.07413 -8.97757 -8.61431 -8.48361 -8.11266 -8.08035 -6.36723 -6.12573 -3.80951 1.58817 2.85098 2.93575 3.11709 3.27697 3.32454 3.35742 3.41381 3.76555 4.16883 4.29649 4.36138 4.69359 4.79136 4.88784 4.98639 5.05698 5.11923 5.21918 5.22628 5.26094 5.31485 5.39240 5.48659 5.55091 5.64027 5.72065 5.77379 5.82163 5.84036 5.85200 5.98830 6.03683 6.07871 6.17771 6.27792 6.35712 6.65585 6.78656 6.95956 7.34944 7.67722 7.81064 7.93405 8.43799 8.89511 9.32805 10.94727 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.004514 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.063373 B = 6201.360315 C = 7951.817591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 N -0.481 5.481 4 C 0.168 3.832 5 O -0.210 6.210 6 C -0.059 4.059 7 C 0.155 3.845 8 N -0.662 5.662 9 C 0.069 3.931 10 H 0.077 0.923 11 C -0.182 4.182 12 C 0.130 3.870 13 N -0.617 5.617 14 C 0.084 3.916 15 C 0.545 3.455 16 O -0.505 6.505 17 C -0.148 4.148 18 S -0.058 6.058 19 C -0.533 4.533 20 H 0.070 0.930 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.914 3.086 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.352 0.648 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -16.057 14.021 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 N -0.210 5.210 4 C -0.059 4.059 5 O -0.097 6.097 6 C -0.111 4.111 7 C 0.026 3.974 8 N -0.294 5.294 9 C -0.042 4.042 10 H 0.096 0.904 11 C -0.241 4.241 12 C 0.006 3.994 13 N -0.352 5.352 14 C -0.060 4.060 15 C 0.333 3.667 16 O -0.378 6.378 17 C -0.298 4.298 18 S 0.169 5.831 19 C -0.681 4.681 20 H 0.088 0.912 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.741 3.259 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.262 0.738 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.172 0.828 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.977 -14.664 13.203 20.618 hybrid contribution -1.147 -0.597 0.757 1.498 sum 4.830 -15.261 13.960 21.239 Atomic orbital electron populations 1.20142 0.86438 1.04727 1.01671 1.21478 0.98024 0.87144 1.02829 1.70390 1.01334 1.31966 1.17282 1.27928 0.97682 0.79175 1.01083 1.84359 1.30289 1.24811 1.70206 1.22877 0.80709 0.97586 1.09969 1.20174 1.00031 0.85606 0.91555 1.60451 1.39421 1.18834 1.10738 1.22025 0.95957 0.87011 0.99252 0.90445 1.22468 0.98963 1.00600 1.02117 1.21345 0.89678 0.91288 0.97081 1.47582 1.09701 1.18398 1.59563 1.21682 0.84250 1.01694 0.98395 1.19971 0.89391 0.80864 0.76506 1.90636 1.24662 1.75043 1.47424 1.23529 0.99956 1.01512 1.04832 1.85405 1.16142 1.09289 1.72252 1.22865 0.96760 1.04906 1.43611 0.91174 1.24951 0.97057 0.96731 0.94727 1.70023 1.26338 1.18419 1.35521 0.86235 0.82155 0.79725 0.77789 1.20300 1.20851 1.19753 0.91603 0.89744 0.90366 0.73759 0.88387 0.94067 0.82817 0.91847 0.91959 0.92662 0.90802 0.89976 0.93217 0.91965 0.90961 0.90057 0.89764 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.05 36.01 0.36 -0.75 16 2 C 0.03 0.43 7.11 -82.81 -0.59 -0.16 16 3 N -0.48 -8.32 11.29 -11.18 -0.13 -8.45 16 4 C 0.17 2.29 13.23 52.09 0.69 2.98 16 5 O -0.21 -2.99 10.78 5.34 0.06 -2.94 16 6 C -0.06 -0.86 6.90 -35.69 -0.25 -1.10 16 7 C 0.16 1.76 5.64 -4.98 -0.03 1.73 16 8 N -0.66 -8.28 4.50 -108.00 -0.49 -8.77 16 9 C 0.07 0.65 2.89 -67.72 -0.20 0.45 16 10 H 0.08 0.65 7.80 -51.93 -0.40 0.24 16 11 C -0.18 -1.38 9.16 37.16 0.34 -1.04 16 12 C 0.13 1.42 5.20 -4.04 -0.02 1.40 16 13 N -0.62 -8.26 2.78 -181.58 -0.50 -8.76 16 14 C 0.08 0.84 10.24 59.85 0.61 1.45 16 15 C 0.55 10.16 7.04 -10.98 -0.08 10.08 16 16 O -0.50 -11.17 14.57 5.56 0.08 -11.09 16 17 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -26.69 13.22 55.49 0.73 -25.95 16 23 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.18 7.80 -51.93 -0.40 0.78 16 30 H 0.25 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.10 1.00 7.72 -51.93 -0.40 0.59 16 32 H 0.04 0.40 7.44 -51.93 -0.39 0.01 16 33 H 0.35 4.95 8.47 -39.29 -0.33 4.61 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 36 H 0.05 0.41 7.45 -51.92 -0.39 0.02 16 37 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.08 1.07 7.43 -51.92 -0.39 0.68 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 41 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 42 H 0.08 1.59 8.11 -51.91 -0.42 1.17 16 43 H 0.08 1.62 7.40 -51.92 -0.38 1.24 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -37.00 382.80 -7.26 -44.25 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.76 Total: 3.80 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 1.22 Total: -0.85 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.38 Total: -51.93 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.14 Total: -14.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.00 -7.26 -44.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755578524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.659 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds