Wall clock time and date at job start Tue Mar 31 2020 15:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34481 * 126.16973 * 2 1 4 4 C 1.30255 * 108.70376 * 180.26908 * 3 2 1 5 5 O 1.33969 * 108.76064 * 359.75373 * 4 3 2 6 6 C 1.34332 * 126.16356 * 179.85273 * 2 1 3 7 7 C 1.50702 * 126.44446 * 0.02562 * 6 2 1 8 8 N 1.46892 * 109.46988 * 89.71420 * 7 6 2 9 9 C 1.46900 * 111.00205 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.46911 * 34.99998 * 9 8 7 11 11 C 1.52995 * 109.47272 * 274.99937 * 9 8 7 12 12 C 1.52999 * 109.47495 * 154.99436 * 9 8 7 13 13 N 1.46499 * 109.47276 * 305.00416 * 12 9 8 14 14 C 1.46499 * 120.00136 * 269.99459 * 13 12 9 15 15 C 1.34784 * 119.99971 * 89.99654 * 13 12 9 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 13 12 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 13 12 18 18 S 1.81006 * 109.46975 * 180.02562 * 17 15 13 19 19 C 1.76200 * 100.00155 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47316 * 89.99758 * 23 21 19 25 25 H 1.48498 * 109.47135 * 209.99728 * 23 21 19 26 26 H 1.48505 * 109.47071 * 329.99777 * 23 21 19 27 27 H 1.08997 * 109.46879 * 270.14560 * 1 2 3 28 28 H 1.09004 * 109.46613 * 30.14874 * 1 2 3 29 29 H 1.08999 * 109.46908 * 150.14598 * 1 2 3 30 30 H 1.07995 * 125.61831 * 179.78329 * 4 3 2 31 31 H 1.08995 * 109.46824 * 329.70923 * 7 6 2 32 32 H 1.09000 * 109.47003 * 209.71142 * 7 6 2 33 33 H 1.00902 * 111.00425 * 56.04069 * 8 7 6 34 34 H 1.08994 * 109.47262 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47202 * 299.99883 * 11 9 8 36 36 H 1.09009 * 109.47062 * 59.99460 * 11 9 8 37 37 H 1.08998 * 109.47074 * 184.99991 * 12 9 8 38 38 H 1.09008 * 109.46412 * 64.99997 * 12 9 8 39 39 H 1.08996 * 109.47008 * 270.00543 * 14 13 12 40 40 H 1.08997 * 109.46865 * 30.00228 * 14 13 12 41 41 H 1.08998 * 109.47058 * 149.99741 * 14 13 12 42 42 H 1.09005 * 109.47403 * 300.00056 * 17 15 13 43 43 H 1.09002 * 109.47422 * 60.00295 * 17 15 13 44 44 H 0.97005 * 120.00072 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0856 0.0000 4 6 3.5432 0.6947 -0.0058 5 8 3.5735 -0.6447 -0.0042 6 6 2.2997 -1.0845 0.0028 7 6 1.8493 -2.5226 0.0059 8 7 1.6968 -2.9910 -1.3779 9 6 1.2571 -4.3922 -1.4141 10 1 0.5828 -4.5830 -0.5793 11 6 2.4750 -5.3118 -1.3065 12 6 0.5276 -4.6640 -2.7312 13 7 -0.5675 -3.7038 -2.8901 14 6 -1.9002 -4.0200 -2.3705 15 6 -0.3488 -2.5295 -3.5145 16 8 0.7557 -2.2657 -3.9404 17 6 -1.4753 -1.5422 -3.6785 18 16 -0.8704 -0.0758 -4.5504 19 6 -2.3492 0.8807 -4.6032 20 1 -3.2582 0.4941 -4.1664 21 6 -2.3460 2.1308 -5.2061 22 7 -1.2380 2.6021 -5.7379 23 14 -3.9136 3.1452 -5.2614 24 1 -3.9909 4.0033 -4.0520 25 1 -3.9072 4.0002 -6.4755 26 1 -5.0888 2.2382 -5.3008 27 1 -0.3633 0.0026 1.0276 28 1 -0.3633 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 4.4066 1.3434 -0.0106 31 1 0.8937 -2.6029 0.5241 32 1 2.5922 -3.1349 0.5170 33 1 2.5524 -2.8666 -1.8982 34 1 2.1488 -6.3515 -1.3329 35 1 3.1494 -5.1210 -2.1414 36 1 2.9948 -5.1182 -0.3681 37 1 0.1243 -5.6766 -2.7210 38 1 1.2260 -4.5593 -3.5616 39 1 -2.4787 -4.5303 -3.1405 40 1 -1.8059 -4.6670 -1.4984 41 1 -2.4073 -3.0982 -2.0858 42 1 -2.2795 -2.0007 -4.2540 43 1 -1.8505 -1.2526 -2.6968 44 1 -1.2356 3.4760 -6.1589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755578524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:02 Heat of formation + Delta-G solvation = -35.229137 kcal Electronic energy + Delta-G solvation = -26569.893556 eV Core-core repulsion = 22842.435132 eV Total energy + Delta-G solvation = -3727.458424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.24968 -40.63579 -38.22193 -36.15874 -35.99210 -34.54795 -33.70762 -31.48990 -30.60218 -28.47860 -28.06227 -27.63013 -26.26606 -25.73645 -23.09953 -22.00318 -21.72908 -20.45671 -19.42563 -18.14492 -17.83078 -17.65113 -17.04065 -16.85068 -16.70977 -16.35087 -16.01318 -15.91612 -15.57019 -14.91398 -14.50699 -14.38032 -14.23387 -14.11520 -13.81241 -13.77985 -13.50531 -13.26884 -13.17921 -13.11436 -13.04907 -13.00464 -12.88021 -12.80304 -12.55820 -12.35073 -11.97386 -11.84985 -11.65948 -11.46481 -11.11323 -10.56200 -10.16106 -9.66042 -9.54270 -9.09101 -8.57776 -8.30994 -6.06203 0.49690 1.30798 1.41913 1.49558 1.62262 1.73198 1.87296 1.95306 2.28953 2.40489 3.02970 3.28157 3.36842 3.39448 3.77070 3.93972 3.94862 3.99562 4.16746 4.27952 4.31957 4.39422 4.44577 4.49953 4.57916 4.62330 4.69664 4.74129 4.77482 4.85973 4.87602 4.96572 5.02174 5.04804 5.10392 5.19136 5.29827 5.44043 5.47198 5.81239 6.12430 6.22630 6.36861 6.57871 6.80003 7.10437 7.52339 8.78059 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.004514 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.063373 B = 6201.360315 C = 7951.817591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.013 4.013 3 N -0.531 5.531 4 C 0.177 3.823 5 O -0.213 6.213 6 C -0.056 4.056 7 C 0.161 3.839 8 N -0.684 5.684 9 C 0.074 3.926 10 H 0.100 0.900 11 C -0.173 4.173 12 C 0.126 3.874 13 N -0.602 5.602 14 C 0.075 3.925 15 C 0.544 3.456 16 O -0.550 6.550 17 C -0.121 4.121 18 S -0.147 6.147 19 C -0.542 4.542 20 H 0.079 0.921 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.256 1.256 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.290 0.710 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.338 0.662 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -18.487 15.874 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.132 4.132 3 N -0.260 5.260 4 C -0.049 4.049 5 O -0.099 6.099 6 C -0.109 4.109 7 C 0.032 3.968 8 N -0.316 5.316 9 C -0.037 4.037 10 H 0.118 0.882 11 C -0.232 4.232 12 C 0.003 3.997 13 N -0.336 5.336 14 C -0.067 4.067 15 C 0.331 3.669 16 O -0.427 6.427 17 C -0.272 4.272 18 S 0.081 5.919 19 C -0.690 4.690 20 H 0.097 0.903 21 C -0.190 4.190 22 N -0.549 5.549 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.180 1.180 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.305 0.695 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.567 -17.161 15.094 23.306 hybrid contribution -0.680 0.030 0.223 0.717 sum 3.887 -17.131 15.318 23.307 Atomic orbital electron populations 1.20041 0.86352 1.02825 1.02761 1.21755 0.98635 0.87959 1.04892 1.70344 1.03037 1.33204 1.19441 1.28920 0.97997 0.79364 0.98651 1.84382 1.30277 1.25149 1.70142 1.23422 0.80382 0.98684 1.08363 1.20304 1.01281 0.83817 0.91379 1.60442 1.38894 1.21061 1.11154 1.22058 0.96906 0.85774 0.98926 0.88205 1.22368 0.97778 1.01268 1.01811 1.21627 0.88741 0.92260 0.97062 1.47519 1.11853 1.16691 1.57541 1.21979 0.82241 1.02282 1.00247 1.19630 0.87954 0.82123 0.77177 1.90626 1.25895 1.76354 1.49780 1.23350 1.00882 0.98734 1.04278 1.85564 1.18314 1.13859 1.74201 1.23189 0.96864 1.05424 1.43568 0.90324 1.26067 1.00905 0.98047 0.94003 1.70195 1.29080 1.18982 1.36672 0.85035 0.77584 0.77883 0.78005 1.19493 1.20309 1.18011 0.89007 0.93302 0.90367 0.69457 0.86905 0.91905 0.84378 0.89702 0.93379 0.92070 0.86802 0.92659 0.91875 0.88090 0.91712 0.88846 0.88519 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.98 10.05 71.24 0.72 -1.27 16 2 C -0.01 -0.44 7.11 41.26 0.29 -0.15 16 3 N -0.53 -18.94 11.29 -304.06 -3.43 -22.37 16 4 C 0.18 4.79 13.23 130.48 1.73 6.52 16 5 O -0.21 -5.98 10.78 -3.81 -0.04 -6.02 16 6 C -0.06 -1.61 6.90 24.79 0.17 -1.44 16 7 C 0.16 3.36 5.64 85.56 0.48 3.84 16 8 N -0.68 -16.34 4.50 -495.60 -2.23 -18.57 16 9 C 0.07 1.18 2.89 44.91 0.13 1.31 16 10 H 0.10 1.19 7.80 -2.39 -0.02 1.17 16 11 C -0.17 -2.11 9.16 71.98 0.66 -1.45 16 12 C 0.13 2.42 5.20 86.38 0.45 2.86 16 13 N -0.60 -14.83 2.78 -846.77 -2.35 -17.18 16 14 C 0.07 1.23 10.24 127.77 1.31 2.54 16 15 C 0.54 20.26 7.04 87.65 0.62 20.87 16 16 O -0.55 -25.15 14.57 -3.01 -0.04 -25.20 16 17 C -0.12 -5.01 4.71 71.23 0.34 -4.68 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 19 C -0.54 -31.91 9.50 67.95 0.65 -31.27 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.84 5.49 84.86 0.47 1.30 16 22 N -0.91 -57.94 13.22 21.65 0.29 -57.65 16 23 Si 0.99 45.02 29.55 68.60 2.03 47.05 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.08 2.39 7.80 -2.39 -0.02 2.37 16 30 H 0.29 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.11 1.99 7.72 -2.39 -0.02 1.97 16 32 H 0.06 1.04 7.44 -2.39 -0.02 1.03 16 33 H 0.34 9.57 8.47 -89.69 -0.76 8.81 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 36 H 0.06 0.70 7.45 -2.38 -0.02 0.68 16 37 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.05 1.40 7.43 -2.38 -0.02 1.38 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 41 H 0.06 1.19 6.44 -2.39 -0.02 1.18 16 42 H 0.09 3.60 8.11 -2.39 -0.02 3.58 16 43 H 0.10 3.72 7.40 -2.39 -0.02 3.70 16 44 H 0.27 15.90 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -86.34 382.80 1.30 -85.04 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.25 Total: 25.49 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 8.00 Total: -1.01 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -7.73 Total: -115.79 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.08 Total: -31.22 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -86.34 1.30 -85.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755578524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.808 kcal (2) G-P(sol) polarization free energy of solvation -86.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds