Wall clock time and date at job start Tue Mar 31 2020 16:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47299 * 2 1 4 4 N 1.29022 * 124.91757 * 89.99789 * 3 2 1 5 5 C 1.31784 * 117.12499 * 180.02562 * 4 3 2 6 6 C 1.50697 * 122.74878 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47369 * 305.02209 * 6 5 4 8 8 O 1.21282 * 119.99858 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00284 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00004 * 0.02562 * 9 7 6 11 11 C 1.46506 * 120.00290 * 180.02562 * 9 7 6 12 12 C 1.53001 * 109.47114 * 270.00378 * 11 9 7 13 13 H 1.09006 * 109.47121 * 59.99738 * 12 11 9 14 14 O 1.42895 * 109.46955 * 299.99823 * 12 11 9 15 15 C 1.52992 * 109.47148 * 179.97438 * 12 11 9 16 16 N 1.46499 * 109.47267 * 184.99978 * 15 12 11 17 17 C 1.36935 * 119.99938 * 179.97438 * 16 15 12 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 15 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 C 1.33640 * 114.49788 * 0.23062 * 5 4 3 26 26 S 1.70980 * 124.91474 * 270.00125 * 3 2 1 27 27 H 1.09002 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47655 * 300.00066 * 1 2 3 29 29 H 1.09007 * 109.47087 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.47276 * 239.99758 * 2 1 3 31 31 H 1.08997 * 109.47149 * 119.99753 * 2 1 3 32 32 H 1.09000 * 109.46861 * 185.02186 * 6 5 4 33 33 H 1.08997 * 109.47105 * 65.02114 * 6 5 4 34 34 H 1.08994 * 109.47389 * 270.00168 * 10 9 7 35 35 H 1.09007 * 109.46958 * 29.99862 * 10 9 7 36 36 H 1.09000 * 109.47278 * 149.99598 * 10 9 7 37 37 H 1.08996 * 109.46975 * 149.99846 * 11 9 7 38 38 H 1.08999 * 109.46944 * 30.00396 * 11 9 7 39 39 H 0.96699 * 114.00430 * 299.99811 * 14 12 11 40 40 H 1.09004 * 109.47330 * 64.99881 * 15 12 11 41 41 H 1.09005 * 109.47124 * 305.00085 * 15 12 11 42 42 H 0.96999 * 119.99984 * 359.97438 * 16 15 12 43 43 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 44 44 H 1.07997 * 126.03119 * 179.77194 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0579 5 6 2.7133 3.3483 0.8793 6 6 3.0392 4.2720 2.0245 7 6 1.8443 4.3831 2.9360 8 8 0.8282 3.7720 2.6810 9 7 1.9050 5.1608 4.0350 10 6 3.1325 5.8986 4.3433 11 6 0.7436 5.2684 4.9215 12 6 -0.1426 6.4281 4.4625 13 1 -0.4799 6.2459 3.4421 14 8 0.6048 7.6452 4.5069 15 6 -1.3559 6.5401 5.3878 16 7 -2.2640 7.5713 4.8798 17 6 -3.4262 7.8498 5.5483 18 1 -3.6755 7.3062 6.4476 19 6 -4.2864 8.8273 5.0673 20 7 -3.9852 9.4861 3.9684 21 14 -5.8722 9.2066 5.9788 22 1 -5.5550 9.6555 7.3583 23 1 -6.6084 10.2810 5.2653 24 1 -6.7142 7.9849 6.0370 25 6 2.8363 3.7122 -0.4007 26 16 2.3585 2.3435 -1.4020 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2921 5.2582 1.6351 33 1 3.8862 3.8736 2.5828 34 1 3.7802 5.2821 4.9665 35 1 3.6496 6.1471 3.4164 36 1 2.8812 6.8156 4.8762 37 1 1.0809 5.4505 5.9418 38 1 0.1735 4.3400 4.8876 39 1 0.9371 7.8709 5.3865 40 1 -1.0244 6.8098 6.3906 41 1 -1.8761 5.5828 5.4223 42 1 -2.0420 8.0568 4.0700 43 1 -4.5865 10.1689 3.6321 44 1 3.1715 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755795879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:33 Heat of formation + Delta-G solvation = -29.749351 kcal Electronic energy + Delta-G solvation = -25364.899503 eV Core-core repulsion = 21637.678701 eV Total energy + Delta-G solvation = -3727.220803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52587 -39.38561 -37.38215 -35.09750 -34.50442 -33.98150 -31.74100 -31.16265 -29.58996 -28.19283 -26.72756 -25.67834 -25.01664 -22.89551 -22.01362 -21.17995 -19.95788 -19.39043 -17.76060 -17.16535 -17.07973 -16.45739 -15.91105 -15.69770 -15.25285 -15.05189 -14.69861 -14.44460 -14.39596 -14.08785 -13.67047 -13.37991 -13.19117 -13.07462 -12.89185 -12.64262 -12.45494 -12.37447 -12.25062 -11.99906 -11.85431 -11.62631 -11.40698 -11.33817 -10.91483 -10.77300 -10.63843 -10.18279 -9.93254 -9.74637 -9.69891 -9.58750 -9.48294 -8.86998 -8.85293 -8.43218 -6.87985 -5.70835 -3.00190 0.55855 1.20886 1.56162 2.56149 2.72697 3.08482 3.46975 3.50757 3.52376 3.81219 4.46951 4.59362 4.61492 4.77890 4.79910 4.85257 4.98444 4.99399 5.06680 5.09669 5.15626 5.24795 5.32329 5.37525 5.48727 5.57434 5.59920 5.62471 5.72936 5.74028 5.87065 5.93325 6.04228 6.06301 6.27963 6.51676 6.58857 6.79311 7.37039 7.66241 7.71838 8.04831 8.25733 8.47336 9.58444 10.16762 10.52480 11.51636 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002543 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.818410 B =11008.617666 C =11956.729888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.056 3.944 4 N -0.445 5.445 5 C 0.089 3.911 6 C -0.064 4.064 7 C 0.516 3.484 8 O -0.517 6.517 9 N -0.610 5.610 10 C 0.080 3.920 11 C 0.089 3.911 12 C 0.087 3.913 13 H 0.100 0.900 14 O -0.551 6.551 15 C 0.127 3.873 16 N -0.725 5.725 17 C -0.243 4.243 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.257 4.257 26 S 0.107 5.893 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.365 0.635 40 H 0.020 0.980 41 H 0.026 0.974 42 H 0.388 0.612 43 H 0.255 0.745 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.569 -16.188 -7.591 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.224 4.224 4 N -0.158 5.158 5 C -0.044 4.044 6 C -0.107 4.107 7 C 0.302 3.698 8 O -0.392 6.392 9 N -0.344 5.344 10 C -0.063 4.063 11 C -0.035 4.035 12 C 0.026 3.974 13 H 0.118 0.882 14 O -0.355 6.355 15 C -0.002 4.002 16 N -0.370 5.370 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.396 4.396 26 S 0.363 5.637 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.211 0.789 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 20.603 -16.949 -8.838 28.104 hybrid contribution -0.492 1.202 1.559 2.029 sum 20.111 -15.747 -7.279 26.560 Atomic orbital electron populations 1.21776 0.93259 1.02451 1.03210 1.20209 0.96987 0.87459 1.03931 1.27065 1.02972 1.01736 0.90583 1.65971 1.13001 1.05619 1.31237 1.19568 1.00396 0.91361 0.93052 1.20255 0.98081 0.98892 0.93424 1.20254 0.89323 0.78959 0.81239 1.90755 1.32122 1.44403 1.71876 1.47673 1.14582 1.46823 1.25320 1.21818 0.86023 0.96772 1.01664 1.22173 0.87499 1.01036 0.92774 1.22546 0.90258 0.82937 1.01641 0.88230 1.86624 1.72928 1.41634 1.34286 1.21224 0.90493 0.93606 0.94852 1.42244 1.21194 1.42471 1.31099 1.19183 0.96538 1.15642 1.06010 0.91321 1.24764 0.99111 0.99225 0.97861 1.69673 1.38027 1.27330 1.22871 0.86252 0.83454 0.77570 0.78804 1.21283 1.21662 1.21264 1.26749 1.12773 1.04379 0.95696 1.83869 1.60890 1.05739 1.13226 0.91476 0.91423 0.92421 0.89863 0.88870 0.87257 0.87403 0.92971 0.91270 0.90277 0.90274 0.88937 0.78902 0.96264 0.95594 0.77765 0.93469 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.15 0.37 -0.95 16 2 C -0.04 -0.38 6.52 -27.88 -0.18 -0.56 16 3 C 0.06 0.63 6.64 -13.46 -0.09 0.54 16 4 N -0.44 -6.16 9.68 -8.06 -0.08 -6.24 16 5 C 0.09 1.10 5.64 -84.23 -0.47 0.63 16 6 C -0.06 -0.66 4.75 -29.04 -0.14 -0.80 16 7 C 0.52 7.37 7.64 -10.99 -0.08 7.29 16 8 O -0.52 -9.75 15.02 5.56 0.08 -9.67 16 9 N -0.61 -7.53 2.80 -181.57 -0.51 -8.04 16 10 C 0.08 0.66 9.98 59.85 0.60 1.25 16 11 C 0.09 1.22 5.10 -4.04 -0.02 1.20 16 12 C 0.09 1.51 3.27 -26.73 -0.09 1.42 16 13 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 14 O -0.55 -9.20 12.01 -35.23 -0.42 -9.62 16 15 C 0.13 2.64 5.90 -4.05 -0.02 2.62 16 16 N -0.73 -19.46 5.55 -59.91 -0.33 -19.80 16 17 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 21 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C -0.26 -2.68 11.07 29.12 0.32 -2.36 16 26 S 0.11 1.04 23.18 -107.50 -2.49 -1.46 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.85 7.29 -51.93 -0.38 0.48 16 33 H 0.11 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 36 H 0.08 0.63 6.88 -51.93 -0.36 0.27 16 37 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.09 1.42 7.42 -51.93 -0.39 1.04 16 39 H 0.36 4.74 8.79 45.56 0.40 5.14 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.39 11.22 7.67 -40.82 -0.31 10.91 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -37.92 382.19 -8.33 -46.25 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.98 Total: 10.86 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.06 Total: 2.54 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.19 Total: -62.70 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.34 Total: -19.29 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.92 -8.33 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755795879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.500 kcal (2) G-P(sol) polarization free energy of solvation -37.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds