Wall clock time and date at job start Tue Mar 31 2020 16:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47299 * 2 1 4 4 N 1.29022 * 124.91757 * 89.99789 * 3 2 1 5 5 C 1.31784 * 117.12499 * 180.02562 * 4 3 2 6 6 C 1.50697 * 122.74878 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47369 * 305.02209 * 6 5 4 8 8 O 1.21282 * 119.99858 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00284 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00004 * 0.02562 * 9 7 6 11 11 C 1.46506 * 120.00290 * 180.02562 * 9 7 6 12 12 C 1.53001 * 109.47114 * 270.00378 * 11 9 7 13 13 H 1.09006 * 109.47121 * 59.99738 * 12 11 9 14 14 O 1.42895 * 109.46955 * 299.99823 * 12 11 9 15 15 C 1.52992 * 109.47148 * 179.97438 * 12 11 9 16 16 N 1.46499 * 109.47267 * 184.99978 * 15 12 11 17 17 C 1.36935 * 119.99938 * 179.97438 * 16 15 12 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 15 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 C 1.33640 * 114.49788 * 0.23062 * 5 4 3 26 26 S 1.70980 * 124.91474 * 270.00125 * 3 2 1 27 27 H 1.09002 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47655 * 300.00066 * 1 2 3 29 29 H 1.09007 * 109.47087 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.47276 * 239.99758 * 2 1 3 31 31 H 1.08997 * 109.47149 * 119.99753 * 2 1 3 32 32 H 1.09000 * 109.46861 * 185.02186 * 6 5 4 33 33 H 1.08997 * 109.47105 * 65.02114 * 6 5 4 34 34 H 1.08994 * 109.47389 * 270.00168 * 10 9 7 35 35 H 1.09007 * 109.46958 * 29.99862 * 10 9 7 36 36 H 1.09000 * 109.47278 * 149.99598 * 10 9 7 37 37 H 1.08996 * 109.46975 * 149.99846 * 11 9 7 38 38 H 1.08999 * 109.46944 * 30.00396 * 11 9 7 39 39 H 0.96699 * 114.00430 * 299.99811 * 14 12 11 40 40 H 1.09004 * 109.47330 * 64.99881 * 15 12 11 41 41 H 1.09005 * 109.47124 * 305.00085 * 15 12 11 42 42 H 0.96999 * 119.99984 * 359.97438 * 16 15 12 43 43 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 44 44 H 1.07997 * 126.03119 * 179.77194 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0579 5 6 2.7133 3.3483 0.8793 6 6 3.0392 4.2720 2.0245 7 6 1.8443 4.3831 2.9360 8 8 0.8282 3.7720 2.6810 9 7 1.9050 5.1608 4.0350 10 6 3.1325 5.8986 4.3433 11 6 0.7436 5.2684 4.9215 12 6 -0.1426 6.4281 4.4625 13 1 -0.4799 6.2459 3.4421 14 8 0.6048 7.6452 4.5069 15 6 -1.3559 6.5401 5.3878 16 7 -2.2640 7.5713 4.8798 17 6 -3.4262 7.8498 5.5483 18 1 -3.6755 7.3062 6.4476 19 6 -4.2864 8.8273 5.0673 20 7 -3.9852 9.4861 3.9684 21 14 -5.8722 9.2066 5.9788 22 1 -5.5550 9.6555 7.3583 23 1 -6.6084 10.2810 5.2653 24 1 -6.7142 7.9849 6.0370 25 6 2.8363 3.7122 -0.4007 26 16 2.3585 2.3435 -1.4020 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2921 5.2582 1.6351 33 1 3.8862 3.8736 2.5828 34 1 3.7802 5.2821 4.9665 35 1 3.6496 6.1471 3.4164 36 1 2.8812 6.8156 4.8762 37 1 1.0809 5.4505 5.9418 38 1 0.1735 4.3400 4.8876 39 1 0.9371 7.8709 5.3865 40 1 -1.0244 6.8098 6.3906 41 1 -1.8761 5.5828 5.4223 42 1 -2.0420 8.0568 4.0700 43 1 -4.5865 10.1689 3.6321 44 1 3.1715 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755795879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:32 Heat of formation + Delta-G solvation = -59.333582 kcal Electronic energy + Delta-G solvation = -25366.182372 eV Core-core repulsion = 21637.678701 eV Total energy + Delta-G solvation = -3728.503671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45466 -40.37040 -38.76865 -36.37305 -35.78805 -35.24635 -33.30601 -32.44068 -30.93169 -29.16099 -27.82495 -26.74370 -26.19821 -24.61557 -23.00538 -22.63760 -20.81020 -20.34066 -19.26946 -18.61364 -18.13841 -17.67170 -17.00495 -16.68831 -16.51762 -16.35551 -16.14846 -15.60025 -15.44099 -15.19987 -14.99111 -14.67453 -14.31786 -14.26018 -13.95181 -13.81639 -13.60920 -13.38182 -13.14042 -13.03733 -12.99182 -12.74246 -12.63911 -12.55765 -12.32240 -12.23257 -12.06941 -12.03825 -11.84989 -11.25294 -10.99935 -10.82221 -10.52420 -10.30791 -9.65949 -9.50688 -9.05471 -7.97192 -5.27990 -0.23820 0.45554 0.76566 1.44337 1.48945 1.55018 1.64349 1.73685 2.16491 2.53903 3.08611 3.33555 3.47162 3.61050 3.74142 3.84146 4.04833 4.08126 4.16885 4.18802 4.28959 4.31184 4.36471 4.44420 4.48799 4.54771 4.63442 4.69057 4.72513 4.85826 4.88489 4.92169 5.01760 5.04102 5.15635 5.20725 5.29792 5.43288 5.54103 6.23053 6.41723 6.86682 6.88058 7.23543 7.29105 8.04332 8.27915 9.26229 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002543 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.818410 B =11008.617666 C =11956.729888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.035 3.965 4 N -0.484 5.484 5 C 0.060 3.940 6 C -0.056 4.056 7 C 0.505 3.495 8 O -0.576 6.576 9 N -0.608 5.608 10 C 0.072 3.928 11 C 0.099 3.901 12 C 0.107 3.893 13 H 0.058 0.942 14 O -0.559 6.559 15 C 0.124 3.876 16 N -0.742 5.742 17 C -0.252 4.252 18 H 0.078 0.922 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.980 3.020 22 H -0.272 1.272 23 H -0.294 1.294 24 H -0.278 1.278 25 C -0.261 4.261 26 S 0.141 5.859 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.384 0.616 40 H 0.043 0.957 41 H 0.021 0.979 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.317 -16.336 -6.951 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.244 4.244 4 N -0.198 5.198 5 C -0.073 4.073 6 C -0.098 4.098 7 C 0.293 3.707 8 O -0.454 6.454 9 N -0.340 5.340 10 C -0.070 4.070 11 C -0.025 4.025 12 C 0.046 3.954 13 H 0.076 0.924 14 O -0.366 6.366 15 C -0.003 4.003 16 N -0.385 5.385 17 C -0.383 4.383 18 H 0.096 0.904 19 C -0.271 4.271 20 N -0.621 5.621 21 Si 0.808 3.192 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.205 1.205 25 C -0.400 4.400 26 S 0.397 5.603 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 22.417 -17.112 -8.142 29.353 hybrid contribution -0.973 1.227 1.345 2.065 sum 21.444 -15.884 -6.797 27.538 Atomic orbital electron populations 1.21742 0.93791 1.03383 1.01387 1.20340 0.96405 0.86486 1.05327 1.27546 1.02904 1.02834 0.91081 1.65992 1.14257 1.06768 1.32821 1.19943 1.01421 0.91533 0.94364 1.20343 0.96755 1.00197 0.92508 1.21045 0.89734 0.78198 0.81702 1.90728 1.34515 1.46869 1.73327 1.47802 1.15230 1.46498 1.24462 1.22143 0.84532 0.96943 1.03337 1.21942 0.87687 0.98150 0.94738 1.22127 0.89929 0.84781 0.98531 0.92406 1.86586 1.72606 1.41354 1.36021 1.21440 0.90855 0.91595 0.96431 1.42470 1.21823 1.43547 1.30649 1.19649 0.97307 1.15239 1.06119 0.90410 1.25689 1.02849 0.99538 0.98978 1.69853 1.39339 1.28173 1.24766 0.85124 0.79012 0.77236 0.77844 1.19822 1.22031 1.20458 1.27147 1.11870 1.05608 0.95415 1.83649 1.59899 1.04884 1.11864 0.89162 0.94899 0.92467 0.86902 0.88977 0.84439 0.84931 0.90463 0.89309 0.89777 0.86621 0.91058 0.76712 0.93960 0.96133 0.79545 0.93951 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.04 -0.75 6.52 29.85 0.19 -0.56 16 3 C 0.03 0.79 6.64 88.52 0.59 1.38 16 4 N -0.48 -13.64 9.68 -179.40 -1.74 -15.38 16 5 C 0.06 1.45 5.64 41.52 0.23 1.68 16 6 C -0.06 -1.08 4.75 29.10 0.14 -0.95 16 7 C 0.50 14.34 7.64 87.66 0.67 15.01 16 8 O -0.58 -22.76 15.02 -3.03 -0.05 -22.81 16 9 N -0.61 -14.18 2.80 -846.76 -2.37 -16.54 16 10 C 0.07 0.94 9.98 127.77 1.28 2.21 16 11 C 0.10 2.65 5.10 86.38 0.44 3.09 16 12 C 0.11 3.75 3.27 30.59 0.10 3.85 16 13 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 14 O -0.56 -18.09 12.01 -148.98 -1.79 -19.88 16 15 C 0.12 5.16 5.90 86.38 0.51 5.67 16 16 N -0.74 -40.46 5.55 -343.45 -1.91 -42.36 16 17 C -0.25 -14.74 9.99 84.04 0.84 -13.90 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 20 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 21 Si 0.98 47.60 29.55 68.60 2.03 49.62 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 25 C -0.26 -5.15 11.07 66.78 0.74 -4.42 16 26 S 0.14 2.59 23.18 -56.49 -1.31 1.29 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.14 1.77 7.29 -2.39 -0.02 1.76 16 33 H 0.13 1.82 8.11 -2.39 -0.02 1.81 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.83 6.44 -2.38 -0.02 0.82 16 36 H 0.08 1.05 6.88 -2.39 -0.02 1.03 16 37 H 0.12 2.24 8.07 -2.39 -0.02 2.22 16 38 H 0.07 2.24 7.42 -2.39 -0.02 2.23 16 39 H 0.38 9.08 8.79 -74.06 -0.65 8.43 16 40 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.37 22.24 7.67 -92.71 -0.71 21.53 16 43 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.20 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -85.98 382.19 -0.27 -86.26 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.34 Total: 35.02 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.91 Total: 6.93 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -5.73 Total: -136.43 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.83 Total: -42.68 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.31 Total: 1.29 kcal Total: -85.98 -0.27 -86.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755795879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.925 kcal (2) G-P(sol) polarization free energy of solvation -85.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds