Wall clock time and date at job start Tue Mar 31 2020 15:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00092 * 2 1 4 4 C 1.53003 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47043 * 65.70374 * 4 3 2 6 6 C 1.36942 * 120.00049 * 267.90718 * 5 4 3 7 7 H 1.08001 * 119.99717 * 142.25516 * 6 5 4 8 8 C 1.38811 * 119.99862 * 322.26198 * 6 5 4 9 9 N 1.31625 * 119.99759 * 156.38106 * 8 6 5 10 10 Si 1.86790 * 120.00311 * 336.38181 * 8 6 5 11 11 H 1.48502 * 109.47337 * 95.51004 * 10 8 6 12 12 H 1.48497 * 109.47320 * 215.51038 * 10 8 6 13 13 H 1.48498 * 109.47101 * 335.51157 * 10 8 6 14 14 C 1.46493 * 120.00166 * 87.91096 * 5 4 3 15 15 C 1.53003 * 109.47361 * 270.00251 * 14 5 4 16 16 N 1.46493 * 109.47361 * 179.97438 * 15 14 5 17 17 C 1.34775 * 119.99981 * 179.97438 * 16 15 14 18 18 O 1.21625 * 120.00180 * 359.97438 * 17 16 15 19 19 C 1.47259 * 120.00092 * 180.27376 * 17 16 15 20 20 N 1.30566 * 125.54245 * 179.72080 * 19 17 16 21 21 C 1.30701 * 115.90479 * 180.02562 * 20 19 17 22 22 C 1.50705 * 122.10575 * 180.02562 * 21 20 19 23 23 C 1.34237 * 115.78647 * 359.97438 * 21 20 19 24 24 C 1.50699 * 125.45362 * 180.02562 * 23 21 20 25 25 S 1.71072 * 109.08694 * 359.73188 * 23 21 20 26 26 H 1.08998 * 109.47237 * 60.00294 * 1 2 3 27 27 H 1.09000 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47174 * 300.00272 * 1 2 3 29 29 H 1.09001 * 109.47423 * 60.00134 * 3 2 1 30 30 H 1.09004 * 109.47531 * 299.99838 * 3 2 1 31 31 H 1.09008 * 109.46758 * 305.70633 * 4 3 2 32 32 H 1.08998 * 109.47444 * 185.70509 * 4 3 2 33 33 H 0.96996 * 119.99934 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47748 * 149.99803 * 14 5 4 35 35 H 1.09008 * 109.47159 * 29.99613 * 14 5 4 36 36 H 1.08996 * 109.47056 * 59.99128 * 15 14 5 37 37 H 1.09008 * 109.46463 * 299.99788 * 15 14 5 38 38 H 0.96997 * 120.00068 * 359.97438 * 16 15 14 39 39 H 1.09002 * 109.46852 * 89.97576 * 22 21 20 40 40 H 1.08996 * 109.46667 * 209.97054 * 22 21 20 41 41 H 1.08998 * 109.46889 * 329.97627 * 22 21 20 42 42 H 1.09004 * 109.46496 * 90.01025 * 24 23 21 43 43 H 1.08992 * 109.47155 * 210.00045 * 24 23 21 44 44 H 1.08991 * 109.47312 * 330.00884 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5798 -1.2598 6 6 4.1393 -0.7771 -1.3477 7 1 3.8645 -1.2962 -2.2540 8 6 4.6571 -1.4852 -0.2719 9 7 4.3984 -2.7694 -0.1436 10 14 5.7207 -0.6158 0.9937 11 1 4.8796 -0.1972 2.1437 12 1 6.7820 -1.5401 1.4673 13 1 6.3462 0.5812 0.3763 14 6 4.2446 1.4265 -2.4249 15 6 2.9634 1.5838 -3.2463 16 7 3.2310 2.4310 -4.4111 17 6 2.2421 2.7090 -5.2836 18 8 1.1277 2.2560 -5.1043 19 6 2.5125 3.5556 -6.4577 20 7 1.6404 3.8881 -7.3708 21 6 2.0855 4.6500 -8.3350 22 6 1.1991 5.1173 -9.4606 23 6 3.3816 4.9908 -8.2590 24 6 4.1171 5.8573 -9.2485 25 16 4.0627 4.2908 -6.8544 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8506 0.5579 0.8337 32 1 3.9785 2.1753 0.1015 33 1 4.7605 -3.2644 0.6079 34 1 5.0163 0.9643 -3.0404 35 1 4.5848 2.4069 -2.0911 36 1 2.1917 2.0460 -2.6308 37 1 2.6232 0.6035 -3.5801 38 1 4.1198 2.7920 -4.5543 39 1 0.7344 6.0648 -9.1877 40 1 1.7971 5.2522 -10.3619 41 1 0.4247 4.3730 -9.6462 42 1 4.0431 6.9010 -8.9428 43 1 5.1657 5.5619 -9.2811 44 1 3.6745 5.7359 -10.2371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755841712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:29 Heat of formation + Delta-G solvation = -6.221600 kcal Electronic energy + Delta-G solvation = -25478.219651 eV Core-core repulsion = 21752.019088 eV Total energy + Delta-G solvation = -3726.200563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47210 -39.19398 -37.46805 -35.93575 -34.37166 -33.59661 -31.65564 -30.28558 -29.82189 -28.21281 -26.42046 -25.63985 -25.11128 -23.60922 -22.14478 -21.04420 -20.56188 -19.09233 -18.60330 -17.26985 -16.84317 -16.08871 -15.84318 -15.57840 -15.34016 -14.89975 -14.67481 -14.59299 -14.16918 -13.90046 -13.70947 -13.51914 -13.43131 -13.34330 -13.26005 -12.70000 -12.57334 -12.37708 -12.36218 -11.88735 -11.72272 -11.50950 -11.18610 -11.02220 -10.72242 -10.64728 -10.50550 -10.27870 -9.77752 -9.76618 -9.73336 -9.57455 -9.08385 -8.88461 -8.70442 -8.44395 -6.89086 -5.90923 -3.33618 -0.00269 0.88333 1.30637 2.13812 2.83724 3.16120 3.35233 3.49074 3.52137 4.16221 4.43118 4.56815 4.58535 4.61100 4.71175 4.96212 4.97045 5.05158 5.27915 5.38288 5.40971 5.44185 5.52127 5.58583 5.63007 5.77083 5.85267 5.91197 5.93532 6.01966 6.10453 6.15718 6.20728 6.31213 6.39777 6.50467 6.73793 6.74963 7.24405 7.53922 7.97149 8.11033 8.13869 8.44712 8.99032 9.77045 10.10684 11.24643 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.002784 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.272828 B =10053.441941 C =10905.885032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.042 3.958 4 C 0.131 3.869 5 N -0.589 5.589 6 C -0.262 4.262 7 H 0.077 0.923 8 C 0.047 3.953 9 N -0.891 5.891 10 Si 0.872 3.128 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.271 1.271 14 C 0.139 3.861 15 C 0.096 3.904 16 N -0.713 5.713 17 C 0.589 3.411 18 O -0.500 6.500 19 C 0.004 3.996 20 N -0.396 5.396 21 C 0.049 3.951 22 C -0.079 4.079 23 C -0.234 4.234 24 C -0.077 4.077 25 S 0.173 5.827 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.395 0.605 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 19.494 -14.610 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.310 5.310 6 C -0.390 4.390 7 H 0.094 0.906 8 C -0.154 4.154 9 N -0.532 5.532 10 Si 0.702 3.298 11 H -0.214 1.214 12 H -0.230 1.230 13 H -0.195 1.195 14 C 0.011 3.989 15 C -0.029 4.029 16 N -0.366 5.366 17 C 0.369 3.631 18 O -0.373 6.373 19 C -0.272 4.272 20 N -0.112 5.112 21 C -0.089 4.089 22 C -0.139 4.139 23 C -0.357 4.357 24 C -0.136 4.136 25 S 0.429 5.571 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.229 0.771 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.154 18.551 -13.777 23.108 hybrid contribution 0.065 1.092 0.051 1.096 sum -0.089 19.643 -13.726 23.964 Atomic orbital electron populations 1.22654 0.83618 1.01946 0.98418 1.88276 1.17065 1.26382 1.94820 1.23367 0.97274 0.85262 0.97806 1.21404 0.90436 0.96822 0.90783 1.43885 1.76377 1.04274 1.06501 1.18573 1.37510 0.79959 1.02944 0.90566 1.25332 0.97767 0.94799 0.97538 1.69907 1.44058 1.08482 1.30720 0.87014 0.81294 0.79605 0.81897 1.21427 1.23014 1.19542 1.21020 0.93302 0.94613 0.89955 1.22611 1.01508 0.94148 0.84630 1.45895 1.12021 1.52368 1.26276 1.16711 0.85427 0.80236 0.80718 1.90870 1.22084 1.50673 1.73701 1.27497 0.92203 1.06144 1.01394 1.66500 1.33636 1.10246 1.00847 1.20254 0.92319 0.98734 0.97544 1.20412 0.98262 1.01823 0.93360 1.25391 0.98722 1.08109 1.03446 1.20316 0.99340 0.97655 0.96259 1.83776 1.14698 1.41923 1.16697 0.95012 0.90281 0.95585 0.95378 0.94212 0.91463 0.92740 0.92873 0.91638 0.93890 0.91599 0.90445 0.77108 0.90539 0.90586 0.90351 0.90108 0.90768 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.86 10.31 -35.23 -0.36 -8.23 16 3 C 0.04 0.82 6.27 37.16 0.23 1.06 16 4 C 0.13 2.75 4.90 -4.04 -0.02 2.74 16 5 N -0.59 -13.26 2.04 -173.24 -0.35 -13.61 16 6 C -0.26 -7.12 9.53 -15.06 -0.14 -7.27 16 7 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 8 C 0.05 1.33 5.26 -17.43 -0.09 1.24 16 9 N -0.89 -27.26 13.97 55.49 0.78 -26.48 16 10 Si 0.87 21.70 25.15 -169.99 -4.27 17.43 16 11 H -0.29 -7.03 6.66 56.52 0.38 -6.65 16 12 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.14 2.46 5.83 -4.04 -0.02 2.44 16 15 C 0.10 1.66 5.95 -4.04 -0.02 1.63 16 16 N -0.71 -10.21 5.55 -61.44 -0.34 -10.55 16 17 C 0.59 9.65 7.81 -12.60 -0.10 9.55 16 18 O -0.50 -10.33 17.07 5.26 0.09 -10.24 16 19 C 0.00 0.06 7.46 -14.43 -0.11 -0.05 16 20 N -0.40 -5.84 10.57 -7.69 -0.08 -5.92 16 21 C 0.05 0.54 6.68 -84.48 -0.56 -0.02 16 22 C -0.08 -0.62 10.02 36.01 0.36 -0.26 16 23 C -0.23 -2.11 6.36 -35.72 -0.23 -2.33 16 24 C -0.08 -0.40 10.04 36.01 0.36 -0.04 16 25 S 0.17 1.64 22.28 -107.50 -2.39 -0.75 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.74 5.94 -51.93 -0.31 0.43 16 31 H 0.07 1.59 3.50 -51.92 -0.18 1.41 16 32 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 35 H 0.04 0.65 7.91 -51.92 -0.41 0.24 16 36 H 0.07 1.20 5.99 -51.93 -0.31 0.89 16 37 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 38 H 0.40 4.39 7.62 -40.82 -0.31 4.07 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.40 6.60 -51.93 -0.34 0.05 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.33 6.65 -51.93 -0.35 -0.02 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -35.53 374.76 -6.96 -42.49 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.43 Total: -0.14 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 0.77 Total: 10.35 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.00 Total: -56.56 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.27 Total: -18.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.27 Total: 17.43 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.39 Total: -0.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.53 -6.96 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755841712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.267 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds