Wall clock time and date at job start Tue Mar 31 2020 15:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00092 * 2 1 4 4 C 1.53003 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47043 * 65.70374 * 4 3 2 6 6 C 1.36942 * 120.00049 * 267.90718 * 5 4 3 7 7 H 1.08001 * 119.99717 * 142.25516 * 6 5 4 8 8 C 1.38811 * 119.99862 * 322.26198 * 6 5 4 9 9 N 1.31625 * 119.99759 * 156.38106 * 8 6 5 10 10 Si 1.86790 * 120.00311 * 336.38181 * 8 6 5 11 11 H 1.48502 * 109.47337 * 95.51004 * 10 8 6 12 12 H 1.48497 * 109.47320 * 215.51038 * 10 8 6 13 13 H 1.48498 * 109.47101 * 335.51157 * 10 8 6 14 14 C 1.46493 * 120.00166 * 87.91096 * 5 4 3 15 15 C 1.53003 * 109.47361 * 270.00251 * 14 5 4 16 16 N 1.46493 * 109.47361 * 179.97438 * 15 14 5 17 17 C 1.34775 * 119.99981 * 179.97438 * 16 15 14 18 18 O 1.21625 * 120.00180 * 359.97438 * 17 16 15 19 19 C 1.47259 * 120.00092 * 180.27376 * 17 16 15 20 20 N 1.30566 * 125.54245 * 179.72080 * 19 17 16 21 21 C 1.30701 * 115.90479 * 180.02562 * 20 19 17 22 22 C 1.50705 * 122.10575 * 180.02562 * 21 20 19 23 23 C 1.34237 * 115.78647 * 359.97438 * 21 20 19 24 24 C 1.50699 * 125.45362 * 180.02562 * 23 21 20 25 25 S 1.71072 * 109.08694 * 359.73188 * 23 21 20 26 26 H 1.08998 * 109.47237 * 60.00294 * 1 2 3 27 27 H 1.09000 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47174 * 300.00272 * 1 2 3 29 29 H 1.09001 * 109.47423 * 60.00134 * 3 2 1 30 30 H 1.09004 * 109.47531 * 299.99838 * 3 2 1 31 31 H 1.09008 * 109.46758 * 305.70633 * 4 3 2 32 32 H 1.08998 * 109.47444 * 185.70509 * 4 3 2 33 33 H 0.96996 * 119.99934 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47748 * 149.99803 * 14 5 4 35 35 H 1.09008 * 109.47159 * 29.99613 * 14 5 4 36 36 H 1.08996 * 109.47056 * 59.99128 * 15 14 5 37 37 H 1.09008 * 109.46463 * 299.99788 * 15 14 5 38 38 H 0.96997 * 120.00068 * 359.97438 * 16 15 14 39 39 H 1.09002 * 109.46852 * 89.97576 * 22 21 20 40 40 H 1.08996 * 109.46667 * 209.97054 * 22 21 20 41 41 H 1.08998 * 109.46889 * 329.97627 * 22 21 20 42 42 H 1.09004 * 109.46496 * 90.01025 * 24 23 21 43 43 H 1.08992 * 109.47155 * 210.00045 * 24 23 21 44 44 H 1.08991 * 109.47312 * 330.00884 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5798 -1.2598 6 6 4.1393 -0.7771 -1.3477 7 1 3.8645 -1.2962 -2.2540 8 6 4.6571 -1.4852 -0.2719 9 7 4.3984 -2.7694 -0.1436 10 14 5.7207 -0.6158 0.9937 11 1 4.8796 -0.1972 2.1437 12 1 6.7820 -1.5401 1.4673 13 1 6.3462 0.5812 0.3763 14 6 4.2446 1.4265 -2.4249 15 6 2.9634 1.5838 -3.2463 16 7 3.2310 2.4310 -4.4111 17 6 2.2421 2.7090 -5.2836 18 8 1.1277 2.2560 -5.1043 19 6 2.5125 3.5556 -6.4577 20 7 1.6404 3.8881 -7.3708 21 6 2.0855 4.6500 -8.3350 22 6 1.1991 5.1173 -9.4606 23 6 3.3816 4.9908 -8.2590 24 6 4.1171 5.8573 -9.2485 25 16 4.0627 4.2908 -6.8544 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8506 0.5579 0.8337 32 1 3.9785 2.1753 0.1015 33 1 4.7605 -3.2644 0.6079 34 1 5.0163 0.9643 -3.0404 35 1 4.5848 2.4069 -2.0911 36 1 2.1917 2.0460 -2.6308 37 1 2.6232 0.6035 -3.5801 38 1 4.1198 2.7920 -4.5543 39 1 0.7344 6.0648 -9.1877 40 1 1.7971 5.2522 -10.3619 41 1 0.4247 4.3730 -9.6462 42 1 4.0431 6.9010 -8.9428 43 1 5.1657 5.5619 -9.2811 44 1 3.6745 5.7359 -10.2371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755841712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:28 Heat of formation + Delta-G solvation = -34.208848 kcal Electronic energy + Delta-G solvation = -25479.433269 eV Core-core repulsion = 21752.019088 eV Total energy + Delta-G solvation = -3727.414181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44342 -40.38076 -39.08292 -37.54885 -35.87873 -34.33907 -33.69059 -31.45361 -30.75451 -29.78035 -27.48393 -27.17244 -26.00630 -25.21647 -23.60751 -22.45499 -22.03222 -20.07149 -19.49416 -18.79992 -18.23669 -17.72922 -17.04856 -16.98560 -16.82430 -16.35171 -16.03139 -15.84914 -15.50088 -15.30012 -15.00981 -14.84058 -14.42579 -14.21589 -14.12726 -13.99004 -13.80518 -13.61153 -13.34394 -13.22748 -12.91493 -12.85187 -12.58754 -12.42099 -12.31016 -12.17785 -11.89385 -11.74332 -11.68058 -11.42385 -10.78238 -10.55941 -10.51105 -10.45629 -10.23509 -9.66608 -8.78232 -8.07789 -5.47307 -0.89045 0.04343 0.50166 1.18387 1.39017 1.47675 1.58974 1.67399 2.04596 2.52963 3.06081 3.11613 3.29333 3.55865 3.73048 3.87134 3.98413 4.13612 4.16193 4.35436 4.39299 4.50056 4.55096 4.56601 4.62569 4.65028 4.66152 4.74355 4.74887 4.78547 4.84267 4.92535 4.97394 5.03325 5.05105 5.14801 5.31251 5.33955 6.01865 6.18133 6.27195 6.54706 6.60598 6.92575 7.05934 7.70891 8.08333 9.12468 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.002784 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.272828 B =10053.441941 C =10905.885032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.041 3.959 4 C 0.122 3.878 5 N -0.601 5.601 6 C -0.242 4.242 7 H 0.028 0.972 8 C -0.015 4.015 9 N -0.949 5.949 10 Si 0.944 3.056 11 H -0.281 1.281 12 H -0.314 1.314 13 H -0.243 1.243 14 C 0.140 3.860 15 C 0.114 3.886 16 N -0.696 5.696 17 C 0.589 3.411 18 O -0.559 6.559 19 C -0.053 4.053 20 N -0.433 5.433 21 C 0.019 3.981 22 C -0.078 4.078 23 C -0.215 4.215 24 C -0.081 4.081 25 S 0.251 5.749 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.258 0.742 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 23.972 -15.480 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.038 4.038 4 C -0.003 4.003 5 N -0.323 5.323 6 C -0.372 4.372 7 H 0.046 0.954 8 C -0.211 4.211 9 N -0.593 5.593 10 Si 0.772 3.228 11 H -0.208 1.208 12 H -0.243 1.243 13 H -0.166 1.166 14 C 0.014 3.986 15 C -0.012 4.012 16 N -0.350 5.350 17 C 0.372 3.628 18 O -0.436 6.436 19 C -0.327 4.327 20 N -0.151 5.151 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.338 4.338 24 C -0.140 4.140 25 S 0.507 5.493 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.051 23.098 -14.656 27.432 hybrid contribution -0.630 -0.184 0.111 0.666 sum 1.421 22.914 -14.544 27.178 Atomic orbital electron populations 1.22767 0.81587 1.02430 0.99930 1.88200 1.19588 1.28661 1.95206 1.23420 0.96358 0.84434 0.99569 1.21606 0.91641 0.98221 0.88798 1.43948 1.76854 1.02989 1.08469 1.18339 1.35594 0.82354 1.00913 0.95417 1.25994 0.99409 0.95372 1.00359 1.70070 1.46315 1.10708 1.32221 0.85859 0.78768 0.78846 0.79332 1.20823 1.24336 1.16585 1.21165 0.93094 0.95907 0.88443 1.22153 1.01231 0.92478 0.85318 1.45575 1.12717 1.51526 1.25146 1.17116 0.84681 0.79686 0.81310 1.90820 1.24338 1.53159 1.75332 1.26862 0.95315 1.08930 1.01546 1.66465 1.35609 1.11152 1.01824 1.20726 0.93872 0.99281 0.97922 1.20518 0.98030 1.01623 0.93488 1.26079 0.98146 1.06287 1.03309 1.20591 0.99752 0.97717 0.95915 1.83385 1.10582 1.39512 1.15849 0.94632 0.90503 0.92725 0.92270 0.93528 0.94023 0.88219 0.93286 0.91480 0.89263 0.92231 0.94788 0.74907 0.89595 0.87617 0.91808 0.88151 0.89205 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.40 -18.15 10.31 -148.98 -1.54 -19.68 16 3 C 0.04 1.52 6.27 71.98 0.45 1.97 16 4 C 0.12 4.83 4.90 86.38 0.42 5.25 16 5 N -0.60 -26.53 2.04 -701.99 -1.43 -27.97 16 6 C -0.24 -13.60 9.53 84.03 0.80 -12.80 16 7 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 8 C -0.02 -0.89 5.26 84.86 0.45 -0.44 16 9 N -0.95 -60.76 13.97 21.65 0.30 -60.45 16 10 Si 0.94 45.14 25.15 68.60 1.73 46.86 16 11 H -0.28 -13.05 6.66 99.48 0.66 -12.39 16 12 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 13 H -0.24 -10.37 7.11 99.48 0.71 -9.66 16 14 C 0.14 4.73 5.83 86.38 0.50 5.24 16 15 C 0.11 3.99 5.95 86.38 0.51 4.51 16 16 N -0.70 -19.73 5.55 -466.54 -2.59 -22.32 16 17 C 0.59 19.94 7.81 86.62 0.68 20.62 16 18 O -0.56 -24.61 17.07 -4.11 -0.07 -24.68 16 19 C -0.05 -1.49 7.46 87.25 0.65 -0.83 16 20 N -0.43 -12.88 10.57 -178.23 -1.88 -14.76 16 21 C 0.02 0.40 6.68 41.81 0.28 0.68 16 22 C -0.08 -1.07 10.02 71.24 0.71 -0.35 16 23 C -0.21 -3.16 6.36 24.77 0.16 -3.01 16 24 C -0.08 -0.44 10.04 71.24 0.72 0.27 16 25 S 0.25 4.05 22.28 -56.49 -1.26 2.79 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.66 5.94 -2.38 -0.01 1.65 16 31 H 0.04 1.88 3.50 -2.38 -0.01 1.87 16 32 H 0.10 3.02 7.92 -2.39 -0.02 3.00 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 35 H 0.09 2.27 7.91 -2.38 -0.02 2.25 16 36 H 0.06 2.18 5.99 -2.39 -0.01 2.16 16 37 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.41 8.39 7.62 -92.71 -0.71 7.68 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 0.75 6.60 -2.39 -0.02 0.73 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 43 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.10 0.27 6.65 -2.39 -0.02 0.26 16 Total: -1.00 -84.96 374.76 1.11 -83.85 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.28 Total: 12.97 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 7.58 Total: 23.40 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -5.61 Total: -125.51 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.61 Total: -44.37 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.73 Total: 46.86 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.26 Total: 2.79 kcal Total: -84.96 1.11 -83.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755841712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.642 kcal (2) G-P(sol) polarization free energy of solvation -84.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds