Wall clock time and date at job start Tue Mar 31 2020 15:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21537 * 120.00229 * 0.02562 * 19 18 17 21 21 N 1.32422 * 119.99955 * 180.02562 * 19 18 17 22 22 S 1.49356 * 120.00058 * 180.02562 * 21 19 18 23 23 C 1.81395 * 107.52051 * 179.97438 * 22 21 19 24 24 C 1.81400 * 107.51799 * 295.10408 * 22 21 19 25 25 O 1.42103 * 107.24075 * 57.54907 * 22 21 19 26 26 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 27 27 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 28 28 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 29 29 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 30 30 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 31 31 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 33 33 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 34 34 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 35 35 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 36 36 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 37 37 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 38 38 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 39 39 H 1.08997 * 109.47594 * 59.99952 * 23 22 21 40 40 H 1.09005 * 109.47006 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47309 * 299.99282 * 23 22 21 42 42 H 1.08991 * 109.47650 * 58.46287 * 24 22 21 43 43 H 1.09002 * 109.46889 * 178.46429 * 24 22 21 44 44 H 1.09002 * 109.46947 * 298.45752 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0480 -5.0600 0.4115 21 7 1.0423 -5.1059 2.6111 22 16 0.5793 -6.5259 2.6171 23 6 0.4192 -7.0407 4.3491 24 6 -1.0828 -6.5614 1.8914 25 8 1.5341 -7.2833 1.8862 26 1 -0.3634 0.0038 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 4.5588 2.4344 0.4996 30 1 5.6118 0.9994 0.4977 31 1 7.7407 3.6692 -0.8822 32 1 5.1240 -1.8136 -1.0369 33 1 5.6539 -1.0899 0.5006 34 1 4.6103 -2.5319 0.5087 35 1 0.8985 -2.6365 -0.4975 36 1 2.5908 -3.1883 -0.5052 37 1 2.6712 -2.9761 1.9640 38 1 0.9790 -2.4243 1.9718 39 1 -0.3062 -6.4017 4.8526 40 1 0.0813 -8.0762 4.3906 41 1 1.3860 -6.9536 4.8449 42 1 -1.0471 -6.1533 0.8814 43 1 -1.4415 -7.5900 1.8552 44 1 -1.7586 -5.9623 2.5017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771924276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:26 Heat of formation + Delta-G solvation = 29.587259 kcal Electronic energy + Delta-G solvation = -25492.682209 eV Core-core repulsion = 21768.034434 eV Total energy + Delta-G solvation = -3724.647774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.50197 -39.62204 -36.71076 -34.30978 -33.42405 -33.20529 -32.39571 -30.61232 -30.14396 -29.66519 -28.87507 -26.75815 -25.78148 -24.03556 -22.28683 -20.77198 -18.68180 -18.52398 -18.35041 -17.11132 -16.63887 -16.56096 -16.44605 -15.46969 -15.06040 -14.84783 -14.39562 -14.19051 -14.08494 -13.95567 -13.87921 -13.57569 -13.28636 -12.98703 -12.82181 -12.50181 -12.47051 -12.32886 -12.20224 -11.84388 -11.68012 -11.55373 -11.50378 -11.25303 -11.12265 -10.89393 -10.73865 -10.53749 -10.22411 -10.09503 -9.86233 -9.82436 -9.65643 -9.48361 -8.58919 -8.06798 -7.34223 -6.20430 -4.27342 -1.09281 1.92248 2.51506 2.79265 2.89299 3.25935 3.31729 3.36776 3.49602 3.56715 3.72114 3.96169 4.12525 4.29219 4.35037 4.42716 4.82249 5.07817 5.13638 5.27009 5.41262 5.44228 5.58870 5.63374 5.79568 5.93755 5.97454 6.03840 6.16165 6.19598 6.20226 6.36447 6.48136 6.49401 6.66258 6.68633 6.99035 7.12427 7.21862 7.62971 7.72877 7.95520 8.07666 8.16390 8.75749 8.84244 9.38725 10.87137 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002418 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.522083 B =11576.349715 C =11987.134752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 N -0.299 5.299 4 N -0.326 5.326 5 C 0.257 3.743 6 C -0.533 4.533 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.893 5.893 10 Si 0.906 3.094 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.094 3.906 15 C -0.087 4.087 16 C -0.265 4.265 17 C -0.017 4.017 18 C -0.102 4.102 19 C 0.549 3.451 20 O -0.575 6.575 21 N -1.123 6.123 22 S 2.290 3.710 23 C -0.537 4.537 24 C -0.628 4.628 25 O -0.924 6.924 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.122 0.878 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 -21.979 12.926 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 N -0.123 5.123 4 N -0.106 5.106 5 C 0.139 3.861 6 C -0.572 4.572 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.038 4.038 15 C -0.145 4.145 16 C -0.277 4.277 17 C -0.057 4.057 18 C -0.145 4.145 19 C 0.337 3.663 20 O -0.455 6.455 21 N -1.032 6.032 22 S 2.487 3.513 23 C -0.695 4.695 24 C -0.783 4.783 25 O -0.910 6.910 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.141 0.859 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.966 -20.921 12.424 29.102 hybrid contribution -0.152 -0.611 -1.028 1.206 sum -16.118 -21.531 11.396 29.210 Atomic orbital electron populations 1.20014 0.88135 1.02271 1.01787 1.21925 0.96078 0.90791 1.02675 1.77246 0.87513 1.22685 1.24820 1.49211 1.05728 1.04203 1.51449 1.19633 0.78065 0.89532 0.98832 1.21321 1.12957 1.31515 0.91403 0.91819 1.24928 0.95719 0.95080 0.98116 1.69921 1.19008 1.33030 1.31127 0.86356 0.77564 0.78949 0.83826 1.20348 1.20907 1.19666 1.20773 0.96171 0.85613 1.01221 1.20356 0.93730 0.97277 1.03116 1.19369 0.91344 0.95144 1.21861 1.19516 1.01382 0.90827 0.93950 1.21427 1.03335 0.90056 0.99707 1.20207 0.73791 0.90781 0.81565 1.90836 1.52077 1.67795 1.34831 1.70813 1.60407 1.29491 1.42524 1.13099 0.80129 0.78482 0.79638 1.28982 1.13954 1.11747 1.14799 1.30098 1.21908 1.11002 1.15251 1.93568 1.53409 1.76310 1.67688 0.91580 0.91682 0.91311 0.93117 0.93103 0.92318 0.90519 0.90979 0.90944 0.91505 0.91510 0.88907 0.88748 0.83653 0.84532 0.83299 0.83763 0.85946 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.26 36.01 0.37 -0.58 16 2 C 0.05 1.00 7.22 -82.40 -0.59 0.40 16 3 N -0.30 -7.15 12.58 33.67 0.42 -6.73 16 4 N -0.33 -7.97 3.60 -58.32 -0.21 -8.18 16 5 C 0.26 6.84 6.00 -5.20 -0.03 6.80 16 6 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 7 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 10 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.09 1.99 6.93 -82.26 -0.57 1.42 16 15 C -0.09 -1.56 9.72 36.00 0.35 -1.21 16 16 C -0.27 -5.13 5.35 -105.05 -0.56 -5.69 16 17 C -0.02 -0.28 4.41 -27.88 -0.12 -0.41 16 18 C -0.10 -1.47 5.76 -27.89 -0.16 -1.63 16 19 C 0.55 7.92 7.37 -12.03 -0.09 7.83 16 20 O -0.58 -9.71 13.99 -11.22 -0.16 -9.87 16 21 N -1.12 -12.01 10.20 30.51 0.31 -11.70 16 22 S 2.29 15.09 4.53 -107.50 -0.49 14.60 16 23 C -0.54 -0.12 10.89 101.05 1.10 0.98 16 24 C -0.63 -2.56 10.55 101.05 1.07 -1.49 16 25 O -0.92 -11.86 17.28 -51.79 -0.89 -12.76 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.90 7.25 -51.93 -0.38 0.52 16 29 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.05 1.34 7.05 -51.93 -0.37 0.97 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.31 7.08 -51.93 -0.37 0.94 16 34 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 35 H 0.07 1.05 7.20 -51.93 -0.37 0.67 16 36 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 39 H 0.15 -0.31 8.14 -51.93 -0.42 -0.74 16 40 H 0.14 -0.36 8.14 -51.92 -0.42 -0.78 16 41 H 0.15 0.06 8.14 -51.92 -0.42 -0.36 16 42 H 0.14 1.06 7.07 -51.93 -0.37 0.69 16 43 H 0.12 0.15 8.14 -51.92 -0.42 -0.27 16 44 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -41.18 382.45 -6.05 -47.23 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.85 Total: -2.71 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 0.34 Total: -7.37 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 1.26 Total: -51.62 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.05 Total: -22.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 15.09 SS G_CDS: -0.49 Total: 14.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -41.18 -6.05 -47.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771924276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.814 kcal (2) G-P(sol) polarization free energy of solvation -41.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds