Wall clock time and date at job start Tue Mar 31 2020 15:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21537 * 120.00229 * 0.02562 * 19 18 17 21 21 N 1.32422 * 119.99955 * 180.02562 * 19 18 17 22 22 S 1.49356 * 120.00058 * 180.02562 * 21 19 18 23 23 C 1.81395 * 107.52051 * 179.97438 * 22 21 19 24 24 C 1.81400 * 107.51799 * 295.10408 * 22 21 19 25 25 O 1.42103 * 107.24075 * 57.54907 * 22 21 19 26 26 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 27 27 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 28 28 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 29 29 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 30 30 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 31 31 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 33 33 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 34 34 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 35 35 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 36 36 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 37 37 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 38 38 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 39 39 H 1.08997 * 109.47594 * 59.99952 * 23 22 21 40 40 H 1.09005 * 109.47006 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47309 * 299.99282 * 23 22 21 42 42 H 1.08991 * 109.47650 * 58.46287 * 24 22 21 43 43 H 1.09002 * 109.46889 * 178.46429 * 24 22 21 44 44 H 1.09002 * 109.46947 * 298.45752 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0480 -5.0600 0.4115 21 7 1.0423 -5.1059 2.6111 22 16 0.5793 -6.5259 2.6171 23 6 0.4192 -7.0407 4.3491 24 6 -1.0828 -6.5614 1.8914 25 8 1.5341 -7.2833 1.8862 26 1 -0.3634 0.0038 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 4.5588 2.4344 0.4996 30 1 5.6118 0.9994 0.4977 31 1 7.7407 3.6692 -0.8822 32 1 5.1240 -1.8136 -1.0369 33 1 5.6539 -1.0899 0.5006 34 1 4.6103 -2.5319 0.5087 35 1 0.8985 -2.6365 -0.4975 36 1 2.5908 -3.1883 -0.5052 37 1 2.6712 -2.9761 1.9640 38 1 0.9790 -2.4243 1.9718 39 1 -0.3062 -6.4017 4.8526 40 1 0.0813 -8.0762 4.3906 41 1 1.3860 -6.9536 4.8449 42 1 -1.0471 -6.1533 0.8814 43 1 -1.4415 -7.5900 1.8552 44 1 -1.7586 -5.9623 2.5017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771924276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:25 Heat of formation + Delta-G solvation = -2.463038 kcal Electronic energy + Delta-G solvation = -25494.072014 eV Core-core repulsion = 21768.034434 eV Total energy + Delta-G solvation = -3726.037579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14714 -40.64173 -37.40474 -36.10739 -34.85363 -34.24262 -34.18945 -31.73212 -30.77109 -30.48307 -29.94112 -28.21473 -27.61564 -25.55678 -24.04238 -21.78773 -20.29434 -20.12690 -19.06286 -18.82030 -17.96438 -17.29545 -17.20064 -17.06940 -16.27866 -16.08199 -16.01415 -15.51241 -14.82806 -14.65694 -14.46305 -14.35512 -14.16560 -14.03239 -13.99607 -13.84698 -13.79615 -13.55945 -13.35617 -13.24885 -13.17849 -13.02139 -12.82462 -12.70099 -12.63100 -12.57291 -12.23264 -12.07092 -11.82583 -11.70756 -11.18751 -10.92794 -10.83460 -10.75839 -10.60454 -9.83047 -9.01448 -8.35106 -6.52992 -1.43587 1.16695 1.33246 1.35117 1.35893 1.47650 1.77272 1.94623 1.95501 2.19898 2.32886 2.93934 3.14033 3.81211 3.91188 3.97871 4.03630 4.08922 4.16048 4.20343 4.27491 4.32839 4.44007 4.58273 4.64718 4.72148 4.74011 4.86175 4.87894 4.88975 4.94492 4.96121 5.00626 5.02341 5.14236 5.32925 5.46525 5.50169 5.55959 5.60253 5.79914 6.06667 6.31060 6.61679 7.08540 7.11127 7.18131 8.71065 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002418 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.522083 B =11576.349715 C =11987.134752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.055 3.945 3 N -0.347 5.347 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.972 3.028 11 H -0.273 1.273 12 H -0.268 1.268 13 H -0.271 1.271 14 C 0.075 3.925 15 C -0.082 4.082 16 C -0.257 4.257 17 C -0.009 4.009 18 C -0.101 4.101 19 C 0.541 3.459 20 O -0.614 6.614 21 N -1.139 6.139 22 S 2.257 3.743 23 C -0.491 4.491 24 C -0.607 4.607 25 O -1.002 7.002 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.021 0.979 30 H 0.045 0.955 31 H 0.274 0.726 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.184 0.816 40 H 0.179 0.821 41 H 0.153 0.847 42 H 0.110 0.890 43 H 0.157 0.843 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 -24.225 14.566 34.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 N -0.171 5.171 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.796 3.204 11 H -0.198 1.198 12 H -0.193 1.193 13 H -0.196 1.196 14 C -0.054 4.054 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.048 4.048 18 C -0.144 4.144 19 C 0.329 3.671 20 O -0.498 6.498 21 N -1.045 6.045 22 S 2.461 3.539 23 C -0.651 4.651 24 C -0.764 4.764 25 O -0.988 6.988 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.202 0.798 40 H 0.197 0.803 41 H 0.171 0.829 42 H 0.129 0.871 43 H 0.175 0.825 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.431 -23.160 14.084 32.779 hybrid contribution 0.417 -0.081 -1.360 1.425 sum -18.014 -23.241 12.723 32.039 Atomic orbital electron populations 1.20219 0.84388 1.03512 1.03885 1.22806 0.98303 0.89953 0.99913 1.77181 0.87684 1.24872 1.27358 1.48993 1.05438 1.04981 1.54134 1.19132 0.78992 0.88696 0.97589 1.21429 1.13532 1.32411 0.91761 0.93545 1.25766 0.95331 0.94432 1.02447 1.70003 1.19330 1.33167 1.33161 0.85341 0.77913 0.78657 0.78490 1.19812 1.19258 1.19588 1.21400 0.98119 0.84806 1.01088 1.20410 0.92492 0.97768 1.03371 1.19738 0.90537 0.96527 1.20085 1.19456 1.01190 0.88474 0.95669 1.21312 1.03614 0.91401 0.98024 1.20140 0.73750 0.90936 0.82309 1.90811 1.54050 1.68794 1.36177 1.70468 1.61703 1.31277 1.41027 1.13710 0.80741 0.75983 0.83508 1.28919 1.15661 1.14628 1.05913 1.29838 1.19024 1.13878 1.13640 1.93516 1.56893 1.76412 1.71985 0.88923 0.91433 0.89032 0.96109 0.93690 0.91691 0.90535 0.91622 0.88301 0.90683 0.92672 0.89425 0.87319 0.79834 0.80302 0.82869 0.87150 0.82455 0.81381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.26 71.24 0.73 -1.01 16 2 C 0.06 2.22 7.22 43.10 0.31 2.53 16 3 N -0.35 -17.21 12.58 -47.38 -0.60 -17.81 16 4 N -0.36 -18.22 3.60 -338.42 -1.22 -19.44 16 5 C 0.28 15.49 6.00 85.63 0.51 16.00 16 6 C -0.55 -32.81 9.39 25.60 0.24 -32.57 16 7 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 8 C 0.02 1.21 5.46 84.66 0.46 1.67 16 9 N -0.92 -54.02 13.29 21.45 0.28 -53.74 16 10 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 C 0.08 3.33 6.93 41.40 0.29 3.61 16 15 C -0.08 -3.08 9.72 71.23 0.69 -2.38 16 16 C -0.26 -10.06 5.35 -20.14 -0.11 -10.17 16 17 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 18 C -0.10 -2.89 5.76 29.85 0.17 -2.72 16 19 C 0.54 15.73 7.37 88.02 0.65 16.38 16 20 O -0.61 -21.48 13.99 12.00 0.17 -21.31 16 21 N -1.14 -23.34 10.20 -176.98 -1.80 -25.15 16 22 S 2.26 25.64 4.53 -56.49 -0.26 25.39 16 23 C -0.49 2.49 10.89 113.37 1.24 3.73 16 24 C -0.61 -3.08 10.55 113.37 1.20 -1.89 16 25 O -1.00 -26.42 17.28 -133.15 -2.30 -28.72 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 2.17 7.25 -2.39 -0.02 2.15 16 29 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 2.52 7.05 -2.39 -0.02 2.51 16 31 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.06 2.50 7.08 -2.39 -0.02 2.49 16 34 H 0.10 3.09 7.77 -2.39 -0.02 3.07 16 35 H 0.07 2.32 7.20 -2.39 -0.02 2.30 16 36 H 0.05 1.93 7.73 -2.39 -0.02 1.91 16 37 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.11 2.70 8.14 -2.38 -0.02 2.69 16 39 H 0.18 -2.13 8.14 -2.39 -0.02 -2.15 16 40 H 0.18 -2.19 8.14 -2.39 -0.02 -2.21 16 41 H 0.15 -0.62 8.14 -2.39 -0.02 -0.63 16 42 H 0.11 1.52 7.07 -2.40 -0.02 1.51 16 43 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -98.33 382.45 3.81 -94.53 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.99 Total: 6.08 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 6.51 Total: -6.98 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -3.33 Total: -116.13 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -2.13 Total: -50.03 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 25.64 SS G_CDS: -0.26 Total: 25.39 kcal Total: -98.33 3.81 -94.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771924276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.063 kcal (2) G-P(sol) polarization free energy of solvation -98.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds