Wall clock time and date at job start Tue Mar 31 2020 15:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38104 * 126.32169 * 2 1 4 4 C 1.47277 * 126.41465 * 0.02562 * 3 2 1 5 5 O 1.21526 * 120.00071 * 359.97438 * 4 3 2 6 6 O 1.34758 * 119.99606 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99977 * 175.18519 * 6 4 3 8 8 C 1.50702 * 112.84840 * 54.50035 * 7 6 4 9 9 H 1.08001 * 120.00226 * 244.95384 * 8 7 6 10 10 C 1.37877 * 119.99725 * 64.95145 * 8 7 6 11 11 N 1.31517 * 120.00208 * 354.96131 * 10 8 7 12 12 Si 1.86799 * 119.99735 * 174.95676 * 10 8 7 13 13 H 1.48504 * 109.47440 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47188 * 120.00522 * 12 10 8 15 15 H 1.48495 * 109.47277 * 240.00155 * 12 10 8 16 16 C 1.53784 * 113.61853 * 283.19676 * 7 6 4 17 17 C 1.53779 * 87.08275 * 220.01848 * 16 7 6 18 18 C 1.53781 * 87.08189 * 25.43023 * 17 16 7 19 19 C 1.41418 * 107.16124 * 180.02562 * 3 2 1 20 20 N 1.30431 * 108.06798 * 359.74520 * 19 3 2 21 21 N 1.34577 * 126.31675 * 180.02562 * 2 1 3 22 22 C 1.39908 * 125.76229 * 359.94522 * 21 2 1 23 23 C 1.39332 * 120.85477 * 324.99256 * 22 21 2 24 24 C 1.38005 * 119.07909 * 180.02562 * 23 22 21 25 25 N 1.31944 * 120.83345 * 0.02562 * 24 23 22 26 26 C 1.31938 * 121.88471 * 359.97438 * 25 24 23 27 27 C 1.38006 * 120.83002 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46669 * 269.95753 * 1 2 3 29 29 H 1.09000 * 109.47050 * 29.95407 * 1 2 3 30 30 H 1.08997 * 109.47317 * 149.95913 * 1 2 3 31 31 H 0.96999 * 119.99960 * 184.99373 * 11 10 8 32 32 H 1.09005 * 113.61008 * 334.57098 * 16 7 6 33 33 H 1.08998 * 113.61585 * 105.46437 * 16 7 6 34 34 H 1.08998 * 113.60828 * 270.88001 * 17 16 7 35 35 H 1.09000 * 113.68973 * 139.99374 * 17 16 7 36 36 H 1.08994 * 113.61249 * 220.01950 * 18 17 16 37 37 H 1.09001 * 113.69254 * 89.12421 * 18 17 16 38 38 H 1.07997 * 125.96089 * 179.97438 * 19 3 2 39 39 H 1.07995 * 120.46236 * 0.03020 * 23 22 21 40 40 H 1.07999 * 119.58608 * 180.27954 * 24 23 22 41 41 H 1.07996 * 119.58017 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.45698 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.1127 0.0000 4 6 1.8879 2.5191 0.0005 5 8 0.7026 2.7871 0.0006 6 8 2.8025 3.5088 0.0010 7 6 2.3031 4.8679 -0.1071 8 6 1.2764 5.1995 0.9451 9 1 0.2584 5.4163 0.6569 10 6 1.6368 5.2260 2.2757 11 7 2.8493 4.8659 2.6359 12 14 0.4027 5.7734 3.5668 13 1 -0.8810 6.1237 2.9075 14 1 0.1767 4.6700 4.5348 15 1 0.9312 6.9610 4.2846 16 6 1.8744 5.2553 -1.5323 17 6 2.5128 6.6289 -1.2665 18 6 3.4134 5.9237 -0.2387 19 6 3.6608 0.6486 -0.0006 20 7 3.6360 -0.6555 0.0046 21 7 2.3040 -1.0844 -0.0005 22 6 1.8735 -2.4156 0.0000 23 6 0.7220 -2.7939 0.6871 24 6 0.3311 -4.1173 0.6635 25 7 1.0328 -5.0180 0.0022 26 6 2.1284 -4.6990 -0.6602 27 6 2.5852 -3.3970 -0.6865 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5144 31 1 3.0808 4.8149 3.5765 32 1 2.3787 4.6826 -2.3107 33 1 0.7936 5.2949 -1.6676 34 1 1.8268 7.3507 -0.8235 35 1 3.0572 7.0314 -2.1207 36 1 3.5750 6.5030 0.6703 37 1 4.3389 5.5334 -0.6620 38 1 4.5468 1.2661 -0.0012 39 1 0.1432 -2.0618 1.2306 40 1 -0.5626 -4.4188 1.1895 41 1 2.6739 -5.4664 -1.1893 42 1 3.4825 -3.1426 -1.2311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772341882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:28 Heat of formation + Delta-G solvation = 60.046072 kcal Electronic energy + Delta-G solvation = -27572.253006 eV Core-core repulsion = 23713.482074 eV Total energy + Delta-G solvation = -3858.770932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78901 -40.10915 -38.96071 -36.91998 -34.57889 -34.09187 -32.41862 -32.25161 -31.36408 -30.16983 -27.55464 -26.11022 -24.56434 -24.37744 -23.99167 -23.21523 -21.92898 -20.86162 -19.22886 -18.55550 -17.96050 -16.71390 -16.59555 -16.26064 -15.70172 -15.50843 -15.08355 -14.82014 -14.68548 -14.24855 -14.12033 -13.98404 -13.93067 -13.69759 -13.22744 -12.90310 -12.86985 -12.23415 -12.19418 -11.98544 -11.57974 -11.17738 -11.03357 -10.96419 -10.81058 -10.62161 -10.38949 -10.24222 -9.96891 -9.93024 -9.78165 -9.57737 -9.27776 -9.15379 -8.79365 -8.53536 -8.48908 -8.39730 -6.08643 -4.17106 0.49040 0.73682 1.79322 2.12260 2.42263 3.25630 3.34471 3.40083 3.42526 3.99540 4.09921 4.15575 4.35809 4.39030 4.40947 4.61176 4.72744 4.89988 5.00826 5.17647 5.25796 5.37230 5.41886 5.52270 5.54128 5.66891 5.73991 5.79760 5.86694 5.95055 6.07260 6.21276 6.27659 6.43825 6.49789 6.63294 6.66918 6.88307 6.91858 7.10885 7.33340 7.53986 7.57707 7.58696 7.80890 7.93876 8.40945 8.84622 9.28332 9.50594 10.96132 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.003379 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.835267 B = 8283.308656 C = 8990.466399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.149 3.851 3 C -0.245 4.245 4 C 0.540 3.460 5 O -0.505 6.505 6 O -0.343 6.343 7 C 0.241 3.759 8 C -0.502 4.502 9 H 0.068 0.932 10 C 0.074 3.926 11 N -0.865 5.865 12 Si 0.892 3.108 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.161 4.161 17 C -0.131 4.131 18 C -0.107 4.107 19 C 0.117 3.883 20 N -0.301 5.301 21 N -0.331 5.331 22 C 0.208 3.792 23 C -0.188 4.188 24 C 0.122 3.878 25 N -0.491 5.491 26 C 0.118 3.882 27 C -0.167 4.167 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.204 0.796 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -13.517 -6.093 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.023 3.977 3 C -0.257 4.257 4 C 0.383 3.617 5 O -0.394 6.394 6 O -0.259 6.259 7 C 0.207 3.793 8 C -0.539 4.539 9 H 0.086 0.914 10 C -0.131 4.131 11 N -0.502 5.502 12 Si 0.719 3.281 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.209 1.209 16 C -0.199 4.199 17 C -0.168 4.168 18 C -0.145 4.145 19 C -0.071 4.071 20 N -0.118 5.118 21 N -0.106 5.106 22 C 0.108 3.892 23 C -0.211 4.211 24 C -0.035 4.035 25 N -0.200 5.200 26 C -0.039 4.039 27 C -0.188 4.188 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.221 0.779 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.940 -15.313 -5.939 16.451 hybrid contribution -0.632 1.924 0.956 2.239 sum -1.572 -13.389 -4.983 14.373 Atomic orbital electron populations 1.20857 0.85810 1.05044 1.04311 1.21591 0.94977 0.85468 0.95634 1.19817 0.92732 0.92764 1.20406 1.19327 0.84639 0.84185 0.73592 1.90705 1.18028 1.84497 1.46179 1.86483 1.39829 1.17933 1.81674 1.21207 0.92593 0.74683 0.90779 1.20948 0.95395 1.47315 0.90272 0.91372 1.25027 0.95039 0.94382 0.98651 1.70027 1.18314 1.45287 1.16609 0.86534 0.81739 0.78337 0.81475 1.19464 1.21052 1.20867 1.23564 1.00257 0.97006 0.99096 1.22509 0.99586 0.96275 0.98469 1.22890 0.96201 0.96944 0.98431 1.24420 0.98330 0.90936 0.93434 1.77299 0.94075 1.13716 1.26678 1.45480 1.05196 1.02959 1.57009 1.17711 0.94504 0.81384 0.95650 1.22263 0.98133 0.99172 1.01496 1.22691 0.98337 0.87730 0.94750 1.67705 1.06731 1.37612 1.07992 1.22730 0.92102 0.94177 0.94842 1.22073 1.02437 0.93503 1.00831 0.89188 0.86913 0.91135 0.92894 0.92096 0.92047 0.90245 0.93012 0.90552 0.92275 0.77926 0.83530 0.81656 0.81790 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 8.07 36.00 0.29 -1.10 16 2 C 0.15 2.47 6.86 -81.44 -0.56 1.91 16 3 C -0.25 -4.74 6.13 -105.06 -0.64 -5.39 16 4 C 0.54 12.50 7.60 34.40 0.26 12.76 16 5 O -0.50 -12.45 13.21 -19.29 -0.25 -12.71 16 6 O -0.34 -8.43 9.77 -40.65 -0.40 -8.83 16 7 C 0.24 5.91 0.50 -90.96 -0.05 5.86 16 8 C -0.50 -13.55 6.29 -34.44 -0.22 -13.77 16 9 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 10 C 0.07 2.01 5.24 -17.82 -0.09 1.92 16 11 N -0.87 -24.09 12.54 55.43 0.70 -23.40 16 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.16 -3.44 7.29 -25.92 -0.19 -3.63 16 17 C -0.13 -2.56 7.80 -25.92 -0.20 -2.76 16 18 C -0.11 -2.39 7.19 -25.92 -0.19 -2.57 16 19 C 0.12 2.03 11.87 -16.94 -0.20 1.83 16 20 N -0.30 -5.00 12.28 30.89 0.38 -4.62 16 21 N -0.33 -5.11 3.71 -6.32 -0.02 -5.13 16 22 C 0.21 2.64 6.29 -83.36 -0.52 2.12 16 23 C -0.19 -1.98 8.35 -39.26 -0.33 -2.30 16 24 C 0.12 1.12 11.17 -17.59 -0.20 0.93 16 25 N -0.49 -5.09 10.36 -13.32 -0.14 -5.22 16 26 C 0.12 1.10 11.17 -17.59 -0.20 0.90 16 27 C -0.17 -1.81 9.87 -39.26 -0.39 -2.20 16 28 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 29 H 0.11 1.74 6.50 -51.93 -0.34 1.41 16 30 H 0.07 0.76 6.88 -51.93 -0.36 0.40 16 31 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.85 7.63 -51.93 -0.40 1.45 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.20 3.10 8.06 -52.49 -0.42 2.67 16 39 H 0.15 1.39 6.19 -52.49 -0.33 1.07 16 40 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -32.26 358.42 -7.94 -40.21 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.17 Total: 3.57 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.42 Total: -5.50 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.91 Total: -38.37 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.65 Total: -21.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.26 -7.94 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772341882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.253 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds