Wall clock time and date at job start Tue Mar 31 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38104 * 126.32169 * 2 1 4 4 C 1.47277 * 126.41465 * 0.02562 * 3 2 1 5 5 O 1.21526 * 120.00071 * 359.97438 * 4 3 2 6 6 O 1.34758 * 119.99606 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99977 * 175.18519 * 6 4 3 8 8 C 1.50702 * 112.84840 * 54.50035 * 7 6 4 9 9 H 1.08001 * 120.00226 * 244.95384 * 8 7 6 10 10 C 1.37877 * 119.99725 * 64.95145 * 8 7 6 11 11 N 1.31517 * 120.00208 * 354.96131 * 10 8 7 12 12 Si 1.86799 * 119.99735 * 174.95676 * 10 8 7 13 13 H 1.48504 * 109.47440 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47188 * 120.00522 * 12 10 8 15 15 H 1.48495 * 109.47277 * 240.00155 * 12 10 8 16 16 C 1.53784 * 113.61853 * 283.19676 * 7 6 4 17 17 C 1.53779 * 87.08275 * 220.01848 * 16 7 6 18 18 C 1.53781 * 87.08189 * 25.43023 * 17 16 7 19 19 C 1.41418 * 107.16124 * 180.02562 * 3 2 1 20 20 N 1.30431 * 108.06798 * 359.74520 * 19 3 2 21 21 N 1.34577 * 126.31675 * 180.02562 * 2 1 3 22 22 C 1.39908 * 125.76229 * 359.94522 * 21 2 1 23 23 C 1.39332 * 120.85477 * 324.99256 * 22 21 2 24 24 C 1.38005 * 119.07909 * 180.02562 * 23 22 21 25 25 N 1.31944 * 120.83345 * 0.02562 * 24 23 22 26 26 C 1.31938 * 121.88471 * 359.97438 * 25 24 23 27 27 C 1.38006 * 120.83002 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46669 * 269.95753 * 1 2 3 29 29 H 1.09000 * 109.47050 * 29.95407 * 1 2 3 30 30 H 1.08997 * 109.47317 * 149.95913 * 1 2 3 31 31 H 0.96999 * 119.99960 * 184.99373 * 11 10 8 32 32 H 1.09005 * 113.61008 * 334.57098 * 16 7 6 33 33 H 1.08998 * 113.61585 * 105.46437 * 16 7 6 34 34 H 1.08998 * 113.60828 * 270.88001 * 17 16 7 35 35 H 1.09000 * 113.68973 * 139.99374 * 17 16 7 36 36 H 1.08994 * 113.61249 * 220.01950 * 18 17 16 37 37 H 1.09001 * 113.69254 * 89.12421 * 18 17 16 38 38 H 1.07997 * 125.96089 * 179.97438 * 19 3 2 39 39 H 1.07995 * 120.46236 * 0.03020 * 23 22 21 40 40 H 1.07999 * 119.58608 * 180.27954 * 24 23 22 41 41 H 1.07996 * 119.58017 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.45698 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.1127 0.0000 4 6 1.8879 2.5191 0.0005 5 8 0.7026 2.7871 0.0006 6 8 2.8025 3.5088 0.0010 7 6 2.3031 4.8679 -0.1071 8 6 1.2764 5.1995 0.9451 9 1 0.2584 5.4163 0.6569 10 6 1.6368 5.2260 2.2757 11 7 2.8493 4.8659 2.6359 12 14 0.4027 5.7734 3.5668 13 1 -0.8810 6.1237 2.9075 14 1 0.1767 4.6700 4.5348 15 1 0.9312 6.9610 4.2846 16 6 1.8744 5.2553 -1.5323 17 6 2.5128 6.6289 -1.2665 18 6 3.4134 5.9237 -0.2387 19 6 3.6608 0.6486 -0.0006 20 7 3.6360 -0.6555 0.0046 21 7 2.3040 -1.0844 -0.0005 22 6 1.8735 -2.4156 0.0000 23 6 0.7220 -2.7939 0.6871 24 6 0.3311 -4.1173 0.6635 25 7 1.0328 -5.0180 0.0022 26 6 2.1284 -4.6990 -0.6602 27 6 2.5852 -3.3970 -0.6865 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5144 31 1 3.0808 4.8149 3.5765 32 1 2.3787 4.6826 -2.3107 33 1 0.7936 5.2949 -1.6676 34 1 1.8268 7.3507 -0.8235 35 1 3.0572 7.0314 -2.1207 36 1 3.5750 6.5030 0.6703 37 1 4.3389 5.5334 -0.6620 38 1 4.5468 1.2661 -0.0012 39 1 0.1432 -2.0618 1.2306 40 1 -0.5626 -4.4188 1.1895 41 1 2.6739 -5.4664 -1.1893 42 1 3.4825 -3.1426 -1.2311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772341882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:27 Heat of formation + Delta-G solvation = 42.133381 kcal Electronic energy + Delta-G solvation = -27573.029759 eV Core-core repulsion = 23713.482074 eV Total energy + Delta-G solvation = -3859.547685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.00366 -41.07475 -40.65844 -38.66537 -35.96355 -35.56874 -34.30359 -33.55881 -32.22689 -31.27375 -28.87375 -28.03315 -26.30698 -25.64324 -24.89937 -24.65001 -23.38786 -21.99497 -20.69479 -20.40405 -19.28608 -18.26354 -17.62761 -17.34442 -16.98701 -16.87778 -16.79815 -16.57074 -15.98464 -15.76297 -15.49910 -15.23495 -14.92551 -14.82891 -14.72317 -14.23724 -14.01217 -13.93683 -13.45732 -13.32819 -12.99466 -12.92237 -12.87933 -12.76368 -12.15214 -12.13886 -12.06002 -11.84193 -11.70331 -11.56131 -11.07457 -10.76457 -10.72815 -10.43495 -10.37011 -10.32989 -10.29293 -9.73194 -8.14142 -6.27393 -0.50567 -0.01356 0.56812 0.96297 1.03285 1.34834 1.38233 1.49444 2.34992 2.39676 2.50383 2.66459 3.16329 3.32684 3.38824 3.44656 3.66497 3.76891 3.90149 3.98948 4.04619 4.07833 4.16647 4.28865 4.36527 4.47336 4.48144 4.57035 4.60939 4.73407 4.83204 4.90502 4.91667 4.97782 5.01571 5.18984 5.25766 5.42032 5.44414 5.50744 5.70251 5.79486 5.83078 6.04828 6.25555 6.53909 6.74209 6.83246 7.37715 7.52719 8.89842 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.003379 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.835267 B = 8283.308656 C = 8990.466399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.163 3.837 3 C -0.287 4.287 4 C 0.534 3.466 5 O -0.532 6.532 6 O -0.355 6.355 7 C 0.216 3.784 8 C -0.511 4.511 9 H 0.049 0.951 10 C 0.033 3.967 11 N -0.890 5.890 12 Si 0.943 3.057 13 H -0.270 1.270 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.154 4.154 17 C -0.111 4.111 18 C -0.106 4.106 19 C 0.115 3.885 20 N -0.306 5.306 21 N -0.322 5.322 22 C 0.171 3.829 23 C -0.187 4.187 24 C 0.128 3.872 25 N -0.502 5.502 26 C 0.125 3.875 27 C -0.169 4.169 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.214 0.786 39 H 0.156 0.844 40 H 0.199 0.801 41 H 0.196 0.804 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -15.380 -6.540 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.035 3.965 3 C -0.299 4.299 4 C 0.379 3.621 5 O -0.424 6.424 6 O -0.271 6.271 7 C 0.182 3.818 8 C -0.548 4.548 9 H 0.067 0.933 10 C -0.170 4.170 11 N -0.528 5.528 12 Si 0.769 3.231 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.192 4.192 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.073 4.073 20 N -0.123 5.123 21 N -0.097 5.097 22 C 0.072 3.928 23 C -0.209 4.209 24 C -0.028 4.028 25 N -0.211 5.211 26 C -0.031 4.031 27 C -0.191 4.191 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.216 0.784 41 H 0.213 0.787 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.535 -17.204 -6.394 18.418 hybrid contribution -0.490 2.285 1.065 2.568 sum -2.025 -14.918 -5.329 15.971 Atomic orbital electron populations 1.20924 0.83885 1.05606 1.05223 1.21911 0.96091 0.85100 0.93443 1.19659 0.94354 0.91464 1.24458 1.19855 0.84263 0.85281 0.72683 1.90668 1.18824 1.85132 1.47733 1.86451 1.40342 1.18287 1.82042 1.21448 0.93334 0.75082 0.91972 1.21035 0.95082 1.47323 0.91400 0.93300 1.25624 0.96521 0.94563 1.00243 1.70114 1.19510 1.46448 1.16735 0.85732 0.79906 0.78109 0.79321 1.19461 1.21180 1.19791 1.23497 0.99835 0.98228 0.97652 1.22432 0.98585 0.95183 0.98666 1.22869 0.96742 0.96446 0.98360 1.24546 0.98070 0.91276 0.93442 1.77243 0.95133 1.13141 1.26777 1.45637 1.04518 1.03879 1.55620 1.18170 0.96255 0.80331 0.98030 1.22446 0.97288 1.00078 1.01064 1.23223 0.98857 0.86847 0.93909 1.67811 1.07091 1.38026 1.08189 1.23208 0.91717 0.94104 0.94099 1.22208 1.02386 0.93820 1.00678 0.87931 0.88913 0.87869 0.93006 0.90593 0.93140 0.90669 0.89131 0.93063 0.90992 0.76969 0.82613 0.78418 0.78712 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.60 8.07 71.24 0.58 -2.03 16 2 C 0.16 5.35 6.86 42.11 0.29 5.64 16 3 C -0.29 -11.37 6.13 -20.15 -0.12 -11.49 16 4 C 0.53 25.56 7.60 70.20 0.53 26.10 16 5 O -0.53 -27.22 13.21 19.75 0.26 -26.96 16 6 O -0.36 -17.95 9.77 -56.69 -0.55 -18.51 16 7 C 0.22 10.77 0.50 -11.01 -0.01 10.76 16 8 C -0.51 -28.33 6.29 25.60 0.16 -28.17 16 9 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 10 C 0.03 1.81 5.24 84.65 0.44 2.26 16 11 N -0.89 -50.72 12.54 21.45 0.27 -50.46 16 12 Si 0.94 44.31 29.54 68.60 2.03 46.34 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 C -0.15 -6.56 7.29 31.12 0.23 -6.33 16 17 C -0.11 -4.22 7.80 31.12 0.24 -3.98 16 18 C -0.11 -4.77 7.19 31.12 0.22 -4.54 16 19 C 0.11 4.05 11.87 85.68 1.02 5.06 16 20 N -0.31 -10.10 12.28 -56.20 -0.69 -10.79 16 21 N -0.32 -9.69 3.71 -173.92 -0.65 -10.34 16 22 C 0.17 4.05 6.29 38.38 0.24 4.29 16 23 C -0.19 -3.44 8.35 22.48 0.19 -3.26 16 24 C 0.13 1.93 11.17 84.62 0.95 2.88 16 25 N -0.50 -8.77 10.36 -196.06 -2.03 -10.80 16 26 C 0.13 1.96 11.17 84.62 0.95 2.91 16 27 C -0.17 -3.34 9.87 22.48 0.22 -3.12 16 28 H 0.10 2.46 7.76 -2.39 -0.02 2.44 16 29 H 0.09 2.90 6.50 -2.39 -0.02 2.88 16 30 H 0.10 2.00 6.88 -2.39 -0.02 1.98 16 31 H 0.26 14.24 8.32 -92.71 -0.77 13.46 16 32 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.05 2.21 8.09 -2.39 -0.02 2.20 16 34 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.05 2.52 7.63 -2.39 -0.02 2.50 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.21 6.70 8.06 -2.91 -0.02 6.68 16 39 H 0.16 2.54 6.19 -2.91 -0.02 2.52 16 40 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -71.38 358.42 5.81 -65.57 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.05 Total: 18.96 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 6.13 Total: -3.01 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.10 Total: -82.38 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.29 Total: -45.47 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.38 5.81 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772341882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.701 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds