Wall clock time and date at job start Tue Mar 31 2020 15:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47558 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99965 * 2 1 3 5 5 H 1.08001 * 119.99938 * 239.99846 * 4 2 1 6 6 C 1.37872 * 120.00397 * 60.00043 * 4 2 1 7 7 N 1.31516 * 119.99338 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00441 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46890 * 89.99979 * 8 6 4 10 10 H 1.48502 * 109.47124 * 209.99954 * 8 6 4 11 11 H 1.48493 * 109.47121 * 330.00206 * 8 6 4 12 12 N 1.46501 * 109.47298 * 120.00020 * 2 1 3 13 13 C 1.46504 * 120.00050 * 59.99604 * 12 2 1 14 14 C 1.34772 * 120.00119 * 240.00283 * 12 2 1 15 15 O 1.21356 * 120.00184 * 354.34183 * 14 12 2 16 16 C 1.49352 * 119.99904 * 174.34070 * 14 12 2 17 17 O 1.21372 * 120.00117 * 359.95171 * 16 14 12 18 18 N 1.34782 * 119.99481 * 179.97438 * 16 14 12 19 19 C 1.39685 * 119.99705 * 185.04224 * 18 16 14 20 20 C 1.40037 * 119.72359 * 324.28504 * 19 18 16 21 21 C 1.35883 * 120.99685 * 180.02562 * 20 19 18 22 22 C 1.40671 * 119.99742 * 359.97438 * 21 20 19 23 23 N 1.33694 * 120.92812 * 180.02562 * 22 21 20 24 24 C 1.31080 * 121.36053 * 179.97438 * 23 22 21 25 25 C 1.39328 * 121.76625 * 0.04466 * 24 23 22 26 26 C 1.36574 * 119.91256 * 359.93576 * 25 24 23 27 27 C 1.40821 * 118.15640 * 0.03472 * 26 25 24 28 28 C 1.37800 * 119.72412 * 144.30111 * 19 18 16 29 29 H 1.09003 * 109.47558 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47356 * 299.99991 * 1 2 3 31 31 H 1.09004 * 109.47366 * 59.99984 * 1 2 3 32 32 H 0.97008 * 119.99855 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47218 * 264.03011 * 13 12 2 34 34 H 1.09002 * 109.46753 * 24.02810 * 13 12 2 35 35 H 1.08997 * 109.47356 * 144.03028 * 13 12 2 36 36 H 0.96998 * 120.00125 * 5.05020 * 18 16 14 37 37 H 1.08001 * 119.50424 * 359.97438 * 20 19 18 38 38 H 1.07995 * 120.00516 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.11144 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.04580 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.91690 * 180.31911 * 26 25 24 42 42 H 1.08003 * 120.27460 * 359.95749 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0833 15 8 3.1711 1.0921 1.8424 16 6 3.1865 -0.6977 3.3630 17 8 2.8077 -1.8253 3.6043 18 7 3.9618 -0.0428 4.2499 19 6 4.4168 -0.6975 5.3969 20 6 3.5929 -1.6326 6.0355 21 6 4.0092 -2.2841 7.1530 22 6 5.2851 -2.0236 7.6848 23 7 5.7137 -2.6542 8.7830 24 6 6.9012 -2.4183 9.2855 25 6 7.7746 -1.5014 8.7045 26 6 7.4002 -0.8223 7.5803 27 6 6.1240 -1.0788 7.0430 28 6 5.6724 -0.4175 5.8907 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.7089 1.1614 -3.4844 33 1 0.7981 -2.1451 2.0877 34 1 1.4260 -2.5697 0.4771 35 1 2.5055 -2.6083 1.8919 36 1 4.2037 0.8831 4.0918 37 1 2.6116 -1.8386 5.6343 38 1 3.3608 -3.0025 7.6324 39 1 7.2106 -2.9488 10.1740 40 1 8.7467 -1.3283 9.1422 41 1 8.0663 -0.1117 7.1136 42 1 6.3042 0.3042 5.3943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131943708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:41 Heat of formation + Delta-G solvation = 5.653174 kcal Electronic energy + Delta-G solvation = -26654.111005 eV Core-core repulsion = 22792.981420 eV Total energy + Delta-G solvation = -3861.129585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.29509 -40.45191 -38.57907 -37.15658 -35.79776 -34.40969 -33.65103 -32.81365 -30.55952 -29.69938 -29.42808 -26.37229 -25.39549 -25.12733 -24.28658 -23.18576 -22.43158 -21.00855 -19.40456 -18.72743 -17.78309 -17.39107 -16.81460 -16.47052 -16.26391 -15.69403 -15.40288 -15.11989 -14.81275 -14.59858 -14.42155 -14.23649 -13.88507 -13.43144 -13.27819 -13.24480 -12.61314 -12.45637 -12.41623 -12.29223 -11.93337 -11.69109 -11.57392 -11.15491 -10.89591 -10.87114 -10.82807 -10.75949 -10.35505 -10.24315 -10.23211 -9.74500 -9.28366 -8.96231 -8.76880 -8.51694 -8.14580 -7.81427 -6.16192 -4.24599 0.11519 0.55474 1.60357 1.83349 2.50644 2.74098 3.22919 3.30069 3.33389 3.58029 3.86811 3.92626 4.08565 4.32839 4.34176 4.47512 4.61794 4.66958 4.80539 4.83863 5.05412 5.15775 5.20926 5.47529 5.52740 5.62535 5.83500 5.96658 5.98299 6.04846 6.14555 6.17917 6.30427 6.51569 6.61026 6.67422 6.70581 6.89887 6.99469 7.18887 7.32533 7.60464 7.67413 7.74896 7.90867 8.03784 8.27351 8.51636 8.80054 9.41707 10.89299 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.002376 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.294495 B =11779.483818 C =11965.076231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.550 5.550 13 C 0.078 3.922 14 C 0.493 3.507 15 O -0.534 6.534 16 C 0.510 3.490 17 O -0.497 6.497 18 N -0.654 5.654 19 C 0.164 3.836 20 C -0.096 4.096 21 C -0.077 4.077 22 C 0.113 3.887 23 N -0.470 5.470 24 C 0.121 3.879 25 C -0.175 4.175 26 C -0.060 4.060 27 C -0.081 4.081 28 C -0.134 4.134 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.097 0.903 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.424 0.576 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 -3.504 20.512 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.281 5.281 13 C -0.065 4.065 14 C 0.273 3.727 15 O -0.413 6.413 16 C 0.294 3.706 17 O -0.371 6.371 18 N -0.301 5.301 19 C 0.069 3.931 20 C -0.118 4.118 21 C -0.096 4.096 22 C -0.009 4.009 23 N -0.178 5.178 24 C -0.052 4.052 25 C -0.195 4.195 26 C -0.086 4.086 27 C -0.083 4.083 28 C -0.156 4.156 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.263 0.737 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.174 0.826 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.679 -4.200 20.594 22.739 hybrid contribution 1.058 0.562 -1.334 1.792 sum 9.737 -3.638 19.260 21.886 Atomic orbital electron populations 1.22105 0.97459 0.99908 1.01079 1.19191 0.91294 0.94570 0.79422 0.91561 1.21263 1.32251 1.13217 0.89977 0.91974 1.24886 0.94828 0.94937 0.99027 1.69873 1.36140 1.22442 1.23986 0.86436 0.79265 0.79279 0.82105 1.20491 1.21031 1.19860 1.48286 1.45358 1.12509 1.21915 1.22018 1.00989 0.81616 1.01887 1.19552 0.81983 0.86674 0.84443 1.90729 1.54573 1.18722 1.77275 1.21029 0.78122 0.86000 0.85468 1.90691 1.51723 1.18153 1.76488 1.43316 1.50419 1.16688 1.19662 1.17794 0.92613 0.95444 0.87250 1.21145 1.00971 0.95642 0.94003 1.20697 0.94080 0.99564 0.95253 1.18919 0.94996 0.94364 0.92592 1.68011 1.15875 1.23650 1.10218 1.22915 0.89082 0.94680 0.98543 1.21864 1.01562 0.98584 0.97452 1.21450 0.94489 0.97784 0.94925 1.18543 0.95374 0.98064 0.96363 1.20932 0.94041 1.03035 0.97548 0.94742 0.96823 0.88438 0.92528 0.93226 0.90290 0.90318 0.73710 0.83234 0.84187 0.82559 0.84597 0.84367 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.15 0.33 -3.08 16 2 C 0.25 6.31 2.62 -69.08 -0.18 6.13 16 3 H 0.07 1.86 6.91 -51.93 -0.36 1.50 16 4 C -0.53 -13.95 7.95 -34.44 -0.27 -14.22 16 5 H 0.06 1.63 7.44 -52.49 -0.39 1.24 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.55 -11.74 2.75 -175.81 -0.48 -12.22 16 13 C 0.08 1.42 8.20 59.85 0.49 1.91 16 14 C 0.49 9.89 7.72 -11.63 -0.09 9.80 16 15 O -0.53 -11.86 15.83 5.49 0.09 -11.78 16 16 C 0.51 8.37 7.60 -11.63 -0.09 8.28 16 17 O -0.50 -8.36 10.69 5.48 0.06 -8.30 16 18 N -0.65 -8.70 5.30 -10.30 -0.05 -8.75 16 19 C 0.16 2.03 6.27 -83.77 -0.53 1.50 16 20 C -0.10 -1.21 8.59 -39.75 -0.34 -1.55 16 21 C -0.08 -0.91 9.96 -39.51 -0.39 -1.30 16 22 C 0.11 1.37 6.61 -84.81 -0.56 0.81 16 23 N -0.47 -5.46 10.34 -10.95 -0.11 -5.57 16 24 C 0.12 1.03 11.14 -17.47 -0.19 0.83 16 25 C -0.17 -1.25 10.03 -39.78 -0.40 -1.65 16 26 C -0.06 -0.50 9.89 -39.21 -0.39 -0.89 16 27 C -0.08 -0.88 5.74 -106.81 -0.61 -1.49 16 28 C -0.13 -1.42 9.72 -38.96 -0.38 -1.80 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 35 H 0.08 1.38 5.84 -51.93 -0.30 1.07 16 36 H 0.42 5.01 8.30 -40.82 -0.34 4.68 16 37 H 0.15 1.96 6.21 -52.49 -0.33 1.64 16 38 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -30.89 353.83 -8.16 -39.05 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.89 Total: 5.37 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -3.70 Total: 4.95 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.02 Total: -50.26 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.15 Total: -20.08 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.89 -8.16 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131943708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.702 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds