Wall clock time and date at job start Tue Mar 31 2020 15:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47377 * 2 1 4 4 C 1.34772 * 119.99534 * 90.00164 * 3 2 1 5 5 O 1.21292 * 119.99938 * 175.00090 * 4 3 2 6 6 C 1.50699 * 120.00335 * 355.00260 * 4 3 2 7 7 C 1.50710 * 109.46835 * 180.02562 * 6 4 3 8 8 C 1.37638 * 120.12838 * 265.30174 * 7 6 4 9 9 C 1.38613 * 120.24830 * 180.32226 * 8 7 6 10 10 C 1.38661 * 120.49943 * 359.67763 * 9 8 7 11 11 C 1.37595 * 120.24799 * 359.97438 * 10 9 8 12 12 C 1.40694 * 120.12652 * 85.00304 * 7 6 4 13 13 C 1.41396 * 120.24577 * 359.97382 * 12 7 6 14 14 H 1.08004 * 119.99684 * 27.28666 * 13 12 7 15 15 C 1.39941 * 120.00171 * 207.28862 * 13 12 7 16 16 N 1.30820 * 120.00061 * 15.21021 * 15 13 12 17 17 Si 1.86807 * 119.99881 * 195.21480 * 15 13 12 18 18 H 1.48498 * 109.46897 * 265.03236 * 17 15 13 19 19 H 1.48501 * 109.46952 * 25.03558 * 17 15 13 20 20 H 1.48499 * 109.46757 * 145.03410 * 17 15 13 21 21 C 1.39920 * 119.99892 * 269.99804 * 3 2 1 22 22 C 1.38904 * 120.05396 * 111.97714 * 21 3 2 23 23 C 1.38102 * 119.97891 * 179.76733 * 22 21 3 24 24 C 1.38265 * 120.09678 * 0.48366 * 23 22 21 25 25 C 1.38492 * 120.11138 * 359.79282 * 24 23 22 26 26 F 1.35102 * 119.99049 * 179.97438 * 25 24 23 27 27 C 1.38349 * 120.02148 * 359.95012 * 25 24 23 28 28 H 1.09003 * 109.47356 * 300.00119 * 1 2 3 29 29 H 1.09000 * 109.47248 * 59.99646 * 1 2 3 30 30 H 1.08998 * 109.47594 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46844 * 239.99963 * 2 1 3 32 32 H 1.09000 * 109.47248 * 120.00354 * 2 1 3 33 33 H 1.08994 * 109.47199 * 60.00271 * 6 4 3 34 34 H 1.08994 * 109.46883 * 300.00006 * 6 4 3 35 35 H 1.08002 * 119.87525 * 0.02562 * 8 7 6 36 36 H 1.07995 * 119.75248 * 179.69149 * 9 8 7 37 37 H 1.07996 * 119.87328 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.12842 * 180.02562 * 11 10 9 39 39 H 0.97005 * 119.99845 * 180.02562 * 16 15 13 40 40 H 1.07998 * 120.01222 * 359.97438 * 22 21 3 41 41 H 1.07998 * 119.95394 * 180.25176 * 23 22 21 42 42 H 1.08000 * 119.94403 * 179.76770 * 24 23 22 43 43 H 1.08002 * 120.05048 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0164 1.1672 5 8 2.7325 3.1262 1.1693 6 6 1.8861 1.3479 2.4698 7 6 2.2344 2.2627 3.6158 8 6 3.4462 2.1372 4.2562 9 6 3.7664 2.9728 5.3148 10 6 2.8748 3.9475 5.7365 11 6 1.6607 4.0956 5.1064 12 6 1.3246 3.2523 4.0311 13 6 0.0795 3.3950 3.3762 14 1 -0.3770 2.5440 2.8927 15 6 -0.5612 4.6390 3.3546 16 7 0.1027 5.7222 3.6666 17 14 -2.3645 4.7526 2.8804 18 1 -2.4769 5.0661 1.4332 19 1 -3.0324 3.4560 3.1594 20 1 -3.0176 5.8263 3.6716 21 6 2.2516 2.0407 -1.2118 22 6 1.4463 3.1077 -1.5893 23 6 1.6810 3.7606 -2.7834 24 6 2.7103 3.3475 -3.6089 25 6 3.5120 2.2805 -3.2390 26 9 4.5168 1.8786 -4.0477 27 6 3.2845 1.6264 -2.0413 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.4443 0.4167 2.5652 34 1 0.8174 1.1344 2.4877 35 1 4.1483 1.3817 3.9358 36 1 4.7174 2.8641 5.8148 37 1 3.1349 4.5934 6.5621 38 1 0.9679 4.8557 5.4362 39 1 -0.3416 6.5844 3.6519 40 1 0.6391 3.4287 -0.9477 41 1 1.0572 4.5928 -3.0746 42 1 2.8892 3.8576 -4.5439 43 1 3.9097 0.7945 -1.7522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776806708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:25 Heat of formation + Delta-G solvation = -32.577232 kcal Electronic energy + Delta-G solvation = -27715.806707 eV Core-core repulsion = 23833.099365 eV Total energy + Delta-G solvation = -3882.707342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.90812 -40.29457 -38.34720 -37.24948 -35.53779 -33.58987 -32.06760 -31.04704 -30.55231 -29.47996 -29.05664 -26.81636 -25.04696 -23.60416 -22.80523 -22.39021 -20.94533 -20.19855 -18.89653 -17.54478 -17.15605 -16.48308 -16.40858 -16.20783 -15.68241 -15.55297 -15.34476 -14.65134 -14.48532 -13.95736 -13.73081 -13.63226 -13.57981 -13.30181 -12.97933 -12.60271 -12.50011 -12.26454 -12.09585 -11.77780 -11.69703 -11.49706 -11.43647 -11.27058 -11.13150 -11.01383 -10.84215 -10.69068 -10.41733 -9.49052 -9.38483 -9.32402 -9.15798 -9.12729 -8.78929 -8.27872 -7.32509 -7.29313 -6.69651 -4.32520 1.14058 1.20568 2.76532 2.90470 3.05719 3.08615 3.23841 3.25471 3.26476 3.59770 3.93169 4.29221 4.68743 4.80179 4.86964 4.95662 5.17757 5.21347 5.27080 5.35357 5.38636 5.47552 5.71905 5.77901 5.82976 5.91454 6.01764 6.05803 6.07618 6.17102 6.27848 6.32207 6.40360 6.45561 6.51921 6.66383 6.76219 7.11529 7.14733 7.27961 7.41565 7.59085 7.69064 7.91993 8.02958 8.12523 8.32173 8.64401 8.79846 8.91518 9.00982 10.25635 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004474 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.692042 B = 6256.765042 C = 7191.297289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.110 3.890 3 N -0.592 5.592 4 C 0.520 3.480 5 O -0.492 6.492 6 C -0.063 4.063 7 C -0.185 4.185 8 C -0.080 4.080 9 C -0.239 4.239 10 C -0.105 4.105 11 C -0.160 4.160 12 C 0.132 3.868 13 C -0.462 4.462 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.790 5.790 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.261 1.261 20 H -0.275 1.275 21 C 0.189 3.811 22 C -0.116 4.116 23 C -0.080 4.080 24 C -0.162 4.162 25 C 0.103 3.897 26 F -0.142 7.142 27 C -0.162 4.162 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.278 0.722 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 -8.955 -10.871 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 N -0.325 5.325 4 C 0.310 3.690 5 O -0.361 6.361 6 C -0.103 4.103 7 C -0.187 4.187 8 C -0.098 4.098 9 C -0.259 4.259 10 C -0.124 4.124 11 C -0.179 4.179 12 C 0.130 3.870 13 C -0.491 4.491 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.416 5.416 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.184 1.184 20 H -0.200 1.200 21 C 0.098 3.902 22 C -0.136 4.136 23 C -0.099 4.099 24 C -0.181 4.181 25 C 0.083 3.917 26 F -0.121 7.121 27 C -0.183 4.183 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.403 -8.091 -10.807 13.506 hybrid contribution -0.575 0.182 -0.465 0.762 sum -0.978 -7.908 -11.272 13.805 Atomic orbital electron populations 1.22257 0.95595 1.02245 1.03285 1.21605 0.94845 0.81561 1.03209 1.45935 1.68275 1.14638 1.03660 1.21354 0.77093 0.86238 0.84290 1.90747 1.40028 1.18987 1.86384 1.20308 1.02596 0.97391 0.89956 1.19006 0.96083 1.04077 0.99526 1.20295 0.95046 0.98238 0.96254 1.20305 1.00006 1.02347 1.03227 1.20687 0.95293 0.97377 0.99001 1.21266 0.96831 1.02649 0.97146 1.17313 0.91367 0.88984 0.89338 1.19415 1.03268 0.95185 1.31269 0.90820 1.25813 0.99330 0.95383 0.93317 1.69832 1.36782 0.99069 1.35868 0.86460 0.82929 0.79183 0.79130 1.19716 1.18444 1.20023 1.17299 0.92887 0.93551 0.86448 1.21484 0.99659 0.96009 0.96448 1.20890 0.96675 0.98909 0.93389 1.21103 0.97322 0.97750 1.01918 1.17416 0.88098 0.96433 0.89727 1.91485 1.58419 1.90099 1.72083 1.21154 0.99226 1.03287 0.94632 0.91340 0.92386 0.91484 0.90673 0.89611 0.90656 0.88659 0.89783 0.89649 0.89575 0.86654 0.91055 0.84933 0.84734 0.84847 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 10.23 37.15 0.38 -1.50 16 2 C 0.11 1.24 5.84 -4.04 -0.02 1.22 16 3 N -0.59 -9.32 2.52 -113.47 -0.29 -9.60 16 4 C 0.52 10.45 7.52 -10.99 -0.08 10.36 16 5 O -0.49 -12.41 15.80 5.55 0.09 -12.33 16 6 C -0.06 -1.20 4.03 -29.03 -0.12 -1.32 16 7 C -0.19 -4.37 4.43 -103.91 -0.46 -4.84 16 8 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 9 C -0.24 -5.55 10.05 -39.29 -0.39 -5.94 16 10 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 11 C -0.16 -4.21 8.67 -38.87 -0.34 -4.55 16 12 C 0.13 3.47 5.55 -106.83 -0.59 2.88 16 13 C -0.46 -11.81 8.44 -37.74 -0.32 -12.13 16 14 H 0.07 1.76 6.39 -52.48 -0.34 1.43 16 15 C 0.08 1.99 5.17 -17.34 -0.09 1.90 16 16 N -0.79 -20.86 11.01 55.55 0.61 -20.25 16 17 Si 0.90 18.47 29.59 -169.99 -5.03 13.44 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 C 0.19 2.97 4.75 -83.71 -0.40 2.57 16 22 C -0.12 -1.80 9.56 -39.38 -0.38 -2.18 16 23 C -0.08 -1.03 10.04 -39.62 -0.40 -1.43 16 24 C -0.16 -1.98 10.02 -39.48 -0.40 -2.38 16 25 C 0.10 1.39 7.30 -39.45 -0.29 1.10 16 26 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 27 C -0.16 -2.29 9.66 -39.33 -0.38 -2.67 16 28 H 0.07 0.86 6.94 -51.93 -0.36 0.49 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.09 0.86 6.48 -51.93 -0.34 0.53 16 33 H 0.08 1.18 7.16 -51.93 -0.37 0.81 16 34 H 0.10 1.73 5.29 -51.93 -0.27 1.45 16 35 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 3.13 6.30 -52.49 -0.33 2.80 16 39 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -31.29 365.84 -9.47 -40.76 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.36 Total: 8.40 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -5.05 Total: -24.07 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.33 Total: -29.86 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.29 -9.47 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776806708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.185 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds