Wall clock time and date at job start Tue Mar 31 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39920 * 125.99812 * 2 1 4 4 C 1.38328 * 107.12015 * 180.02562 * 3 2 1 5 5 C 1.41361 * 131.72420 * 179.97438 * 4 3 2 6 6 C 1.35518 * 119.54829 * 179.75501 * 5 4 3 7 7 C 1.46460 * 118.95823 * 0.53914 * 6 5 4 8 8 C 1.47495 * 120.19438 * 179.71999 * 7 6 5 9 9 O 1.21603 * 119.99664 * 187.52788 * 8 7 6 10 10 N 1.34771 * 120.00422 * 7.52826 * 8 7 6 11 11 C 1.47025 * 125.64971 * 354.81475 * 10 8 7 12 12 C 1.54323 * 107.27550 * 178.97657 * 11 10 8 13 13 H 1.08995 * 110.71843 * 96.34472 * 12 11 10 14 14 N 1.46499 * 110.71863 * 219.44272 * 12 11 10 15 15 C 1.36929 * 120.00075 * 273.54267 * 14 12 11 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00251 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00353 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99858 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46915 * 89.99906 * 19 17 15 21 21 H 1.48501 * 109.47020 * 209.99855 * 19 17 15 22 22 H 1.48497 * 109.46868 * 330.00111 * 19 17 15 23 23 C 1.55158 * 102.93616 * 337.80407 * 12 11 10 24 24 C 1.47421 * 125.65021 * 174.85115 * 10 8 7 25 25 H 1.09007 * 110.36772 * 85.14422 * 24 10 8 26 26 C 1.53001 * 110.36975 * 322.93461 * 24 10 8 27 27 C 1.36305 * 119.59872 * 359.44881 * 7 6 5 28 28 N 1.36525 * 120.65761 * 0.27681 * 27 7 6 29 29 C 1.35272 * 125.99960 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46993 * 269.99604 * 1 2 3 31 31 H 1.09001 * 109.47480 * 29.99536 * 1 2 3 32 32 H 1.09006 * 109.47241 * 149.99834 * 1 2 3 33 33 H 1.07995 * 126.43896 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.22362 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.52236 * 180.26097 * 6 5 4 36 36 H 1.09000 * 109.88088 * 59.55363 * 11 10 8 37 37 H 1.09007 * 110.00668 * 298.46525 * 11 10 8 38 38 H 0.96997 * 119.99599 * 93.54278 * 14 12 11 39 39 H 0.97001 * 120.00538 * 179.97438 * 18 17 15 40 40 H 1.09009 * 111.00173 * 153.57599 * 23 12 11 41 41 H 1.08994 * 111.00623 * 277.42778 * 23 12 11 42 42 H 1.09001 * 109.46690 * 61.45067 * 26 24 10 43 43 H 1.08989 * 109.47221 * 181.45142 * 26 24 10 44 44 H 1.08999 * 109.46677 * 301.45339 * 26 24 10 45 45 H 1.08003 * 119.67153 * 180.25203 * 27 7 6 46 46 H 1.07999 * 125.53116 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6382 0.6844 -0.0006 5 6 4.8698 1.3783 -0.0013 6 6 6.0308 0.6793 0.0032 7 6 5.9773 -0.7843 -0.0032 8 6 7.2241 -1.5722 -0.0047 9 8 7.1806 -2.7790 -0.1480 10 7 8.4117 -0.9548 0.1528 11 6 8.6184 0.4990 0.2275 12 6 10.1290 0.7370 0.4351 13 1 10.6215 0.9405 -0.5157 14 7 10.3559 1.8337 1.3794 15 6 10.3912 3.1270 0.9311 16 1 10.2521 3.3386 -0.1188 17 6 10.6067 4.1662 1.8258 18 7 10.6411 5.4093 1.3947 19 14 10.8480 3.8003 3.6417 20 1 12.2926 3.5939 3.9173 21 1 10.3487 4.9433 4.4476 22 1 10.0947 2.5728 4.0036 23 6 10.6142 -0.6106 1.0318 24 6 9.7187 -1.6251 0.2778 25 1 10.1316 -1.8384 -0.7083 26 6 9.5798 -2.9165 1.0864 27 6 4.7683 -1.4138 -0.0022 28 7 3.6084 -0.6936 -0.0010 29 6 2.3021 -1.0944 -0.0005 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 2.0035 2.1616 0.0004 34 1 4.8854 2.4582 -0.0011 35 1 6.9806 1.1934 0.0070 36 1 8.0594 0.9101 1.0681 37 1 8.2929 0.9701 -0.7000 38 1 10.4812 1.6437 2.3223 39 1 10.7914 6.1355 2.0200 40 1 11.6680 -0.7792 0.8098 41 1 10.4314 -0.6508 2.1055 42 1 8.9032 -3.5974 0.5700 43 1 10.5576 -3.3862 1.1917 44 1 9.1793 -2.6856 2.0735 45 1 4.7275 -2.4931 -0.0029 46 1 1.9599 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988934310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:18 Heat of formation + Delta-G solvation = 81.191352 kcal Electronic energy + Delta-G solvation = -27660.238652 eV Core-core repulsion = 23938.217742 eV Total energy + Delta-G solvation = -3722.020910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.21516 -40.26888 -37.68730 -36.39281 -34.43060 -33.47428 -32.18997 -31.65827 -31.02581 -29.07165 -28.07163 -27.24637 -25.77016 -24.11548 -23.42575 -22.31685 -21.69410 -20.55123 -20.23146 -18.87988 -17.93893 -17.60390 -17.03013 -16.48589 -15.68794 -15.44713 -15.40994 -14.68052 -14.52367 -14.42851 -14.15877 -13.88882 -13.67574 -13.48581 -13.27112 -13.10536 -12.87646 -12.69899 -12.43726 -12.21519 -12.13282 -11.99600 -11.71633 -11.67198 -11.50471 -11.08756 -10.98913 -10.75091 -10.57235 -10.47287 -10.42986 -10.17436 -9.73598 -9.72333 -9.08162 -8.58833 -8.39600 -7.48170 -7.42927 -5.91486 -3.30364 0.63690 1.15967 2.47161 2.56588 2.97715 3.12427 3.28164 3.31129 3.37677 3.62177 4.36604 4.45285 4.46493 4.71711 4.76036 4.85859 4.91355 4.93336 4.98770 5.13361 5.17829 5.27511 5.42363 5.43191 5.45303 5.50014 5.57278 5.62939 5.66019 5.70530 5.80242 5.82048 5.87573 5.94258 5.97267 6.03140 6.21129 6.24802 6.29144 6.31469 6.38307 6.51586 6.64683 6.79746 6.85885 7.17417 7.59349 7.81868 8.17503 8.26885 9.03052 9.75403 9.92965 11.25802 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.003687 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.286607 B = 7592.240157 C = 9571.012060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.115 4.115 3 C -0.205 4.205 4 C 0.053 3.947 5 C -0.095 4.095 6 C -0.135 4.135 7 C -0.161 4.161 8 C 0.587 3.413 9 O -0.550 6.550 10 N -0.600 5.600 11 C 0.061 3.939 12 C 0.175 3.825 13 H 0.077 0.923 14 N -0.737 5.737 15 C -0.257 4.257 16 H 0.093 0.907 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.140 4.140 24 C 0.139 3.861 25 H 0.078 0.922 26 C -0.165 4.165 27 C 0.123 3.877 28 N -0.354 5.354 29 C -0.059 4.059 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.179 0.821 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.365 0.635 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.171 0.829 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 -13.890 -2.615 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C -0.229 4.229 4 C -0.051 4.051 5 C -0.113 4.113 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.377 3.623 9 O -0.431 6.431 10 N -0.332 5.332 11 C -0.064 4.064 12 C 0.064 3.936 13 H 0.095 0.905 14 N -0.378 5.378 15 C -0.387 4.387 16 H 0.111 0.889 17 C -0.184 4.184 18 N -0.573 5.573 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.179 4.179 24 C 0.036 3.964 25 H 0.096 0.904 26 C -0.223 4.223 27 C 0.000 4.000 28 N -0.018 5.018 29 C -0.185 4.185 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.196 0.804 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.188 0.812 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.021 -14.500 -2.828 19.693 hybrid contribution 0.110 0.021 1.381 1.386 sum -12.911 -14.479 -1.447 19.454 Atomic orbital electron populations 1.20205 0.89509 1.02344 1.01907 1.19477 0.95774 0.92175 1.04534 1.20998 0.89582 0.98842 1.13441 1.19065 0.95802 0.81726 1.08517 1.20654 0.89069 1.00608 1.00992 1.23695 1.01502 0.91802 0.98439 1.20242 0.92321 0.94281 1.09814 1.17310 0.82061 0.86274 0.76673 1.90706 1.86775 1.13912 1.51690 1.48365 1.05757 1.08504 1.70622 1.23772 1.02065 0.78822 1.01719 1.21213 0.90712 0.86996 0.94718 0.90520 1.42736 1.86807 1.02932 1.05360 1.19055 1.43124 0.80961 0.95536 0.88879 1.24675 1.01173 0.95066 0.97513 1.69690 1.55351 0.98118 1.34128 0.86604 0.78158 0.77303 0.86747 1.20909 1.21586 1.20263 1.23192 0.99431 0.94867 1.00406 1.21882 0.82304 0.93079 0.99153 0.90416 1.22154 1.02478 0.97384 1.00236 1.21610 0.83210 0.97926 0.97303 1.41413 1.05311 1.07146 1.47976 1.21641 0.79760 0.99886 1.17202 0.91568 0.91521 0.91919 0.83682 0.83381 0.80413 0.89717 0.90720 0.80171 0.92818 0.89634 0.90614 0.89802 0.92001 0.92811 0.81157 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.36 36.00 0.37 -0.27 16 2 C -0.12 -1.28 6.10 -105.05 -0.64 -1.92 16 3 C -0.20 -2.54 10.91 -38.92 -0.42 -2.96 16 4 C 0.05 0.74 6.71 -83.94 -0.56 0.18 16 5 C -0.09 -1.29 10.09 -39.37 -0.40 -1.68 16 6 C -0.14 -1.92 8.68 -37.24 -0.32 -2.25 16 7 C -0.16 -2.33 5.97 -103.51 -0.62 -2.95 16 8 C 0.59 9.11 7.52 -12.49 -0.09 9.01 16 9 O -0.55 -9.31 14.12 5.27 0.07 -9.23 16 10 N -0.60 -8.84 3.24 -164.93 -0.53 -9.38 16 11 C 0.06 0.94 4.60 -3.06 -0.01 0.93 16 12 C 0.18 2.91 3.59 -66.10 -0.24 2.67 16 13 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 14 N -0.74 -15.44 4.98 -51.66 -0.26 -15.70 16 15 C -0.26 -6.56 10.46 -15.06 -0.16 -6.72 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 17 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 18 N -0.93 -27.42 13.97 55.49 0.78 -26.64 16 19 Si 0.88 20.75 27.74 -169.99 -4.71 16.04 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 23 C -0.14 -1.92 6.11 -24.58 -0.15 -2.07 16 24 C 0.14 1.85 3.74 -66.42 -0.25 1.60 16 25 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 26 C -0.16 -2.09 8.77 37.16 0.33 -1.76 16 27 C 0.12 1.63 10.45 -16.16 -0.17 1.46 16 28 N -0.35 -4.70 2.93 -60.50 -0.18 -4.88 16 29 C -0.06 -0.67 11.49 -16.46 -0.19 -0.86 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.18 2.56 2.99 -53.35 -0.16 2.40 16 36 H 0.08 1.40 6.48 -51.93 -0.34 1.07 16 37 H 0.07 1.11 6.76 -51.93 -0.35 0.76 16 38 H 0.36 7.63 5.58 -40.82 -0.23 7.41 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 42 H 0.08 1.19 5.93 -51.93 -0.31 0.89 16 43 H 0.06 0.65 8.14 -51.94 -0.42 0.23 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.17 1.99 7.58 -52.48 -0.40 1.59 16 46 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -30.81 367.65 -9.35 -40.16 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.43 Total: 11.44 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.62 Total: -7.35 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.19 Total: -56.59 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.81 -9.35 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988934310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.349 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds