Wall clock time and date at job start Tue Mar 31 2020 17:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39920 * 125.99812 * 2 1 4 4 C 1.38328 * 107.12015 * 180.02562 * 3 2 1 5 5 C 1.41361 * 131.72420 * 179.97438 * 4 3 2 6 6 C 1.35518 * 119.54829 * 179.75501 * 5 4 3 7 7 C 1.46460 * 118.95823 * 0.53914 * 6 5 4 8 8 C 1.47495 * 120.19438 * 179.71999 * 7 6 5 9 9 O 1.21603 * 119.99664 * 187.52788 * 8 7 6 10 10 N 1.34771 * 120.00422 * 7.52826 * 8 7 6 11 11 C 1.47025 * 125.64971 * 354.81475 * 10 8 7 12 12 C 1.54323 * 107.27550 * 178.97657 * 11 10 8 13 13 H 1.08995 * 110.71843 * 96.34472 * 12 11 10 14 14 N 1.46499 * 110.71863 * 219.44272 * 12 11 10 15 15 C 1.36929 * 120.00075 * 273.54267 * 14 12 11 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00251 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00353 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99858 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46915 * 89.99906 * 19 17 15 21 21 H 1.48501 * 109.47020 * 209.99855 * 19 17 15 22 22 H 1.48497 * 109.46868 * 330.00111 * 19 17 15 23 23 C 1.55158 * 102.93616 * 337.80407 * 12 11 10 24 24 C 1.47421 * 125.65021 * 174.85115 * 10 8 7 25 25 H 1.09007 * 110.36772 * 85.14422 * 24 10 8 26 26 C 1.53001 * 110.36975 * 322.93461 * 24 10 8 27 27 C 1.36305 * 119.59872 * 359.44881 * 7 6 5 28 28 N 1.36525 * 120.65761 * 0.27681 * 27 7 6 29 29 C 1.35272 * 125.99960 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46993 * 269.99604 * 1 2 3 31 31 H 1.09001 * 109.47480 * 29.99536 * 1 2 3 32 32 H 1.09006 * 109.47241 * 149.99834 * 1 2 3 33 33 H 1.07995 * 126.43896 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.22362 * 0.02562 * 5 4 3 35 35 H 1.07999 * 120.52236 * 180.26097 * 6 5 4 36 36 H 1.09000 * 109.88088 * 59.55363 * 11 10 8 37 37 H 1.09007 * 110.00668 * 298.46525 * 11 10 8 38 38 H 0.96997 * 119.99599 * 93.54278 * 14 12 11 39 39 H 0.97001 * 120.00538 * 179.97438 * 18 17 15 40 40 H 1.09009 * 111.00173 * 153.57599 * 23 12 11 41 41 H 1.08994 * 111.00623 * 277.42778 * 23 12 11 42 42 H 1.09001 * 109.46690 * 61.45067 * 26 24 10 43 43 H 1.08989 * 109.47221 * 181.45142 * 26 24 10 44 44 H 1.08999 * 109.46677 * 301.45339 * 26 24 10 45 45 H 1.08003 * 119.67153 * 180.25203 * 27 7 6 46 46 H 1.07999 * 125.53116 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6382 0.6844 -0.0006 5 6 4.8698 1.3783 -0.0013 6 6 6.0308 0.6793 0.0032 7 6 5.9773 -0.7843 -0.0032 8 6 7.2241 -1.5722 -0.0047 9 8 7.1806 -2.7790 -0.1480 10 7 8.4117 -0.9548 0.1528 11 6 8.6184 0.4990 0.2275 12 6 10.1290 0.7370 0.4351 13 1 10.6215 0.9405 -0.5157 14 7 10.3559 1.8337 1.3794 15 6 10.3912 3.1270 0.9311 16 1 10.2521 3.3386 -0.1188 17 6 10.6067 4.1662 1.8258 18 7 10.6411 5.4093 1.3947 19 14 10.8480 3.8003 3.6417 20 1 12.2926 3.5939 3.9173 21 1 10.3487 4.9433 4.4476 22 1 10.0947 2.5728 4.0036 23 6 10.6142 -0.6106 1.0318 24 6 9.7187 -1.6251 0.2778 25 1 10.1316 -1.8384 -0.7083 26 6 9.5798 -2.9165 1.0864 27 6 4.7683 -1.4138 -0.0022 28 7 3.6084 -0.6936 -0.0010 29 6 2.3021 -1.0944 -0.0005 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 2.0035 2.1616 0.0004 34 1 4.8854 2.4582 -0.0011 35 1 6.9806 1.1934 0.0070 36 1 8.0594 0.9101 1.0681 37 1 8.2929 0.9701 -0.7000 38 1 10.4812 1.6437 2.3223 39 1 10.7914 6.1355 2.0200 40 1 11.6680 -0.7792 0.8098 41 1 10.4314 -0.6508 2.1055 42 1 8.9032 -3.5974 0.5700 43 1 10.5576 -3.3862 1.1917 44 1 9.1793 -2.6856 2.0735 45 1 4.7275 -2.4931 -0.0029 46 1 1.9599 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988934310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:17 Heat of formation + Delta-G solvation = 64.779432 kcal Electronic energy + Delta-G solvation = -27660.950326 eV Core-core repulsion = 23938.217742 eV Total energy + Delta-G solvation = -3722.732584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.17773 -41.45155 -38.94879 -37.40811 -36.10119 -34.46432 -33.52309 -33.21740 -31.96678 -30.59398 -29.07047 -28.10607 -26.90324 -25.68960 -24.61182 -23.47627 -22.77534 -21.93924 -21.25730 -19.96816 -19.64754 -18.78931 -18.07647 -17.67587 -16.92540 -16.58749 -16.52921 -16.27222 -15.68085 -15.54063 -15.46337 -15.02561 -14.90447 -14.86556 -14.44834 -13.98394 -13.90426 -13.83154 -13.71242 -13.41482 -13.18009 -13.09918 -12.94369 -12.89321 -12.67301 -12.44158 -12.21697 -12.11367 -11.91424 -11.82632 -11.71290 -11.58358 -11.44284 -11.03350 -10.82046 -9.76445 -9.36545 -9.33409 -8.42057 -8.00043 -5.35389 -0.40452 0.12870 1.41599 1.43203 1.47217 1.50432 1.57440 1.95655 2.00930 2.50167 2.54015 3.22848 3.29341 3.44246 3.59337 3.71573 3.73968 3.78775 3.89233 3.96404 4.12505 4.25100 4.28397 4.36343 4.40978 4.44808 4.53741 4.66657 4.70383 4.73404 4.77618 4.81720 4.94409 4.98504 5.00620 5.08264 5.09574 5.23075 5.23889 5.28628 5.29334 5.45580 5.50980 5.80055 5.88218 5.90532 6.23105 6.24547 6.39207 6.98534 7.08645 7.82438 8.00626 9.20540 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.003687 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.286607 B = 7592.240157 C = 9571.012060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.121 4.121 3 C -0.208 4.208 4 C 0.021 3.979 5 C -0.098 4.098 6 C -0.149 4.149 7 C -0.180 4.180 8 C 0.587 3.413 9 O -0.567 6.567 10 N -0.600 5.600 11 C 0.075 3.925 12 C 0.167 3.833 13 H 0.075 0.925 14 N -0.739 5.739 15 C -0.230 4.230 16 H 0.066 0.934 17 C -0.056 4.056 18 N -0.979 5.979 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.301 1.301 22 H -0.253 1.253 23 C -0.127 4.127 24 C 0.136 3.864 25 H 0.090 0.910 26 C -0.156 4.156 27 C 0.131 3.869 28 N -0.363 5.363 29 C -0.059 4.059 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.368 0.632 39 H 0.257 0.743 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.186 0.814 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.226 -16.210 -1.932 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C -0.232 4.232 4 C -0.082 4.082 5 C -0.116 4.116 6 C -0.168 4.168 7 C -0.186 4.186 8 C 0.377 3.623 9 O -0.449 6.449 10 N -0.332 5.332 11 C -0.050 4.050 12 C 0.057 3.943 13 H 0.093 0.907 14 N -0.381 5.381 15 C -0.361 4.361 16 H 0.084 0.916 17 C -0.248 4.248 18 N -0.629 5.629 19 Si 0.774 3.226 20 H -0.205 1.205 21 H -0.229 1.229 22 H -0.177 1.177 23 C -0.165 4.165 24 C 0.034 3.966 25 H 0.107 0.893 26 C -0.214 4.214 27 C 0.008 3.992 28 N -0.029 5.029 29 C -0.184 4.184 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.202 0.798 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.203 0.797 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.170 -16.886 -2.156 22.149 hybrid contribution 0.311 0.682 1.048 1.289 sum -13.859 -16.203 -1.108 21.351 Atomic orbital electron populations 1.20286 0.87051 1.03539 1.02855 1.19948 0.97484 0.91495 1.03573 1.21381 0.89411 1.00093 1.12339 1.19298 0.96305 0.82348 1.10285 1.20812 0.89169 1.01170 1.00495 1.23573 1.01394 0.91945 0.99896 1.20207 0.92489 0.94274 1.11668 1.17437 0.82418 0.86127 0.76289 1.90693 1.87045 1.14473 1.52672 1.48378 1.06313 1.08082 1.70448 1.23445 1.00696 0.79488 1.01390 1.21403 0.91524 0.87273 0.94120 0.90669 1.42684 1.86959 1.02249 1.06199 1.19024 1.39969 0.82874 0.94252 0.91572 1.25400 1.02510 0.94876 1.01987 1.69861 1.58331 0.99256 1.35470 0.85550 0.78276 0.77467 0.81287 1.20535 1.22860 1.17713 1.23130 1.00677 0.92501 1.00228 1.22047 0.81451 0.93222 0.99920 0.89256 1.22069 1.03485 0.96582 0.99253 1.21806 0.83049 0.98529 0.95822 1.41606 1.05881 1.07019 1.48377 1.22312 0.78965 1.01528 1.15627 0.90628 0.90839 0.90291 0.82430 0.82519 0.81197 0.90866 0.90640 0.79822 0.93404 0.87485 0.90538 0.91339 0.89480 0.93571 0.79678 0.78604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.36 71.24 0.74 -0.28 16 2 C -0.12 -2.42 6.10 -20.14 -0.12 -2.55 16 3 C -0.21 -4.90 10.91 22.70 0.25 -4.65 16 4 C 0.02 0.58 6.71 38.99 0.26 0.84 16 5 C -0.10 -2.71 10.09 22.41 0.23 -2.48 16 6 C -0.15 -4.33 8.68 23.78 0.21 -4.12 16 7 C -0.18 -5.22 5.97 -19.15 -0.11 -5.33 16 8 C 0.59 17.91 7.52 86.68 0.65 18.56 16 9 O -0.57 -18.73 14.12 -4.04 -0.06 -18.79 16 10 N -0.60 -17.20 3.24 -793.98 -2.57 -19.78 16 11 C 0.07 2.29 4.60 86.73 0.40 2.69 16 12 C 0.17 5.36 3.59 46.18 0.17 5.52 16 13 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 14 N -0.74 -30.30 4.98 -317.34 -1.58 -31.88 16 15 C -0.23 -11.87 10.46 84.03 0.88 -11.00 16 16 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 17 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 18 N -0.98 -59.71 13.97 21.65 0.30 -59.41 16 19 Si 0.95 42.92 27.74 68.60 1.90 44.82 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16 23 C -0.13 -3.17 6.11 31.99 0.20 -2.97 16 24 C 0.14 3.35 3.74 45.47 0.17 3.52 16 25 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 26 C -0.16 -3.62 8.77 71.98 0.63 -2.98 16 27 C 0.13 3.39 10.45 83.51 0.87 4.27 16 28 N -0.36 -9.24 2.93 -345.32 -1.01 -10.26 16 29 C -0.06 -1.21 11.49 83.26 0.96 -0.25 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.17 5.08 2.99 -3.72 -0.01 5.06 16 36 H 0.07 2.44 6.48 -2.39 -0.02 2.42 16 37 H 0.08 2.29 6.76 -2.38 -0.02 2.27 16 38 H 0.37 14.70 5.58 -92.71 -0.52 14.18 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.08 1.94 7.92 -2.39 -0.02 1.93 16 42 H 0.07 1.84 5.93 -2.39 -0.01 1.83 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.19 4.09 7.58 -2.91 -0.02 4.07 16 46 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -67.12 367.65 4.24 -62.88 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.43 Total: 36.23 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 6.83 Total: -3.82 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -4.86 Total: -121.32 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.90 Total: 44.82 kcal Total: -67.12 4.24 -62.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988934310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.658 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds