Wall clock time and date at job start Tue Mar 31 2020 16:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47330 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47144 * 300.00502 * 3 2 1 6 6 H 1.48506 * 109.47212 * 60.00178 * 3 2 1 7 7 C 1.38811 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00390 * 174.37464 * 9 7 2 11 11 C 1.52999 * 110.01336 * 61.54963 * 10 9 7 12 12 N 1.46498 * 109.47208 * 55.26088 * 11 10 9 13 13 C 1.34777 * 120.00067 * 175.53815 * 12 11 10 14 14 O 1.21593 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.47498 * 119.99992 * 180.02562 * 13 12 11 16 16 C 1.41201 * 126.37319 * 0.03710 * 15 13 12 17 17 C 1.37991 * 106.86752 * 179.97438 * 16 15 13 18 18 C 1.41384 * 131.98901 * 180.02562 * 17 16 15 19 19 C 1.35742 * 119.33460 * 179.97438 * 18 17 16 20 20 C 1.40824 * 119.71910 * 359.97438 * 19 18 17 21 21 C 1.34532 * 120.58577 * 359.97438 * 20 19 18 22 22 N 1.37437 * 120.74137 * 0.04507 * 21 20 19 23 23 C 1.35132 * 131.28596 * 180.02562 * 22 21 20 24 24 C 1.54270 * 110.07436 * 182.96756 * 10 9 7 25 25 C 1.54887 * 104.19459 * 95.70009 * 24 10 9 26 26 C 1.54890 * 102.75024 * 37.93949 * 25 24 10 27 27 C 1.53878 * 110.03355 * 300.16142 * 10 9 7 28 28 H 0.96998 * 119.99882 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99753 * 354.37606 * 9 7 2 30 30 H 1.08997 * 109.47451 * 295.25997 * 11 10 9 31 31 H 1.09007 * 109.47330 * 175.25849 * 11 10 9 32 32 H 0.97002 * 120.00308 * 355.53713 * 12 11 10 33 33 H 1.07999 * 126.56602 * 359.93285 * 16 15 13 34 34 H 1.08009 * 120.33508 * 359.96901 * 18 17 16 35 35 H 1.08001 * 120.14236 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.70509 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.62985 * 180.02562 * 21 20 19 38 38 H 1.08004 * 125.61004 * 0.20445 * 23 22 21 39 39 H 1.08998 * 110.48545 * 214.37459 * 24 10 9 40 40 H 1.09000 * 110.48276 * 337.02092 * 24 10 9 41 41 H 1.08998 * 110.75328 * 279.62799 * 25 24 10 42 42 H 1.08993 * 110.75774 * 156.25856 * 25 24 10 43 43 H 1.09001 * 110.48764 * 203.37732 * 26 25 24 44 44 H 1.09003 * 110.48741 * 80.73710 * 26 25 24 45 45 H 1.09000 * 110.03073 * 359.94709 * 27 10 9 46 46 H 1.09000 * 110.03282 * 121.37832 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0527 -3.6537 -0.1255 11 6 3.0120 -3.8251 1.0540 12 7 2.2662 -3.7150 2.3101 13 6 2.8917 -3.9231 3.4857 14 8 4.0749 -4.2027 3.5037 15 6 2.1406 -3.8128 4.7503 16 6 0.7706 -3.4991 4.8860 17 6 0.4906 -3.5041 6.2372 18 6 -0.7023 -3.2629 6.9568 19 6 -0.6879 -3.3375 8.3121 20 6 0.5102 -3.6535 8.9813 21 6 1.6409 -3.8827 8.2892 22 7 1.6509 -3.8125 6.9167 23 6 2.6458 -3.9995 6.0215 24 6 1.0589 -4.8327 -0.1740 25 6 0.8677 -5.1063 -1.6865 26 6 2.2897 -4.8796 -2.2573 27 6 2.8352 -3.6836 -1.4500 28 1 -0.4850 0.8400 0.0004 29 1 0.3591 -2.3901 0.0822 30 1 3.7766 -3.0492 1.0162 31 1 3.4859 -4.8052 0.9976 32 1 1.3222 -3.4923 2.2958 33 1 0.0752 -3.2938 4.0856 34 1 -1.6158 -3.0216 6.4335 35 1 -1.5917 -3.1561 8.8748 36 1 0.5213 -3.7132 10.0596 37 1 2.5510 -4.1243 8.8181 38 1 3.6672 -4.2560 6.2610 39 1 1.4802 -5.7074 0.3215 40 1 0.1113 -4.5520 0.2857 41 1 0.1602 -4.3997 -2.1204 42 1 0.5428 -6.1329 -1.8553 43 1 2.2402 -4.6333 -3.3179 44 1 2.9098 -5.7619 -2.0982 45 1 2.6733 -2.7568 -2.0003 46 1 3.8984 -3.8202 -1.2526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:29 Heat of formation + Delta-G solvation = 42.758941 kcal Electronic energy + Delta-G solvation = -27644.423974 eV Core-core repulsion = 23920.736510 eV Total energy + Delta-G solvation = -3723.687464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.19105 -39.23297 -38.01484 -36.37615 -34.02477 -33.32625 -33.01925 -30.72027 -29.99098 -28.25538 -27.86721 -27.65589 -24.92995 -23.71142 -23.13857 -22.02939 -21.76302 -20.32399 -19.39106 -18.49906 -17.71593 -17.11534 -16.69533 -16.27006 -15.65083 -15.48200 -15.21256 -14.98458 -14.55436 -14.40215 -14.31218 -14.02422 -13.66318 -13.28171 -13.11773 -12.83993 -12.53100 -12.38667 -12.02789 -11.85839 -11.72204 -11.50810 -11.34061 -10.98041 -10.80464 -10.64662 -10.54087 -10.50712 -10.45764 -10.30076 -10.03683 -9.79032 -9.62307 -9.48157 -8.89805 -8.62953 -8.25086 -7.42486 -6.98531 -5.78261 -3.07035 0.67959 1.30396 2.28230 2.59801 3.41392 3.43564 3.51275 3.52205 3.84827 3.96170 4.38782 4.59660 4.66692 4.70624 4.91348 4.99705 5.14548 5.18055 5.27994 5.28291 5.45809 5.53657 5.60775 5.71984 5.73062 5.81739 5.86348 6.00923 6.02323 6.03973 6.14129 6.20033 6.21261 6.27518 6.30286 6.38269 6.48381 6.62191 6.67890 6.72731 6.78006 6.82439 6.88529 7.07655 7.20493 7.21210 7.76038 8.20074 8.40678 8.81750 9.52562 10.06547 10.42239 11.43892 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003672 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.887926 B = 7623.788009 C = 8864.603765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.580 3.420 14 O -0.563 6.563 15 C -0.161 4.161 16 C -0.153 4.153 17 C 0.022 3.978 18 C -0.069 4.069 19 C -0.143 4.143 20 C -0.138 4.138 21 C 0.041 3.959 22 N -0.344 5.344 23 C 0.013 3.987 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.130 4.130 28 H 0.253 0.747 29 H 0.384 0.616 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.404 0.596 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -11.322 12.781 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.097 3.903 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.367 3.633 14 O -0.444 6.444 15 C -0.168 4.168 16 C -0.178 4.178 17 C -0.082 4.082 18 C -0.087 4.087 19 C -0.163 4.163 20 C -0.159 4.159 21 C -0.078 4.078 22 N -0.008 5.008 23 C -0.120 4.120 24 C -0.161 4.161 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.063 0.937 29 H 0.218 0.782 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.197 0.803 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.384 -11.390 12.975 17.269 hybrid contribution -0.224 1.296 0.115 1.320 sum -0.609 -10.094 13.090 16.541 Atomic orbital electron populations 1.69658 1.04993 1.25444 1.57818 1.24678 0.95397 0.97460 1.02900 0.86223 0.79043 0.84537 0.77070 1.20564 1.21982 1.22017 1.19145 0.91051 0.83794 1.42181 0.91199 1.42549 1.06062 0.99499 1.87243 1.20453 0.91036 0.87271 0.91586 1.21949 0.95227 0.99997 0.83502 1.45568 1.14292 1.69138 1.05086 1.17353 0.86060 0.77005 0.82888 1.90716 1.15527 1.50403 1.87761 1.19688 0.94414 1.09793 0.92915 1.21330 0.95511 1.07284 0.93648 1.18789 0.86983 1.10519 0.91859 1.20710 0.95974 0.98110 0.93954 1.20892 0.98305 1.02864 0.94224 1.20681 0.92003 1.02652 1.00514 1.21631 1.00938 1.04379 0.80818 1.41309 1.09691 1.44625 1.05129 1.21971 0.93611 1.09746 0.86718 1.22579 0.99408 0.97639 0.96442 1.22413 0.97313 1.00139 0.95800 1.22308 0.96269 0.98158 0.99091 1.22663 0.98498 0.98833 0.97005 0.93673 0.78171 0.91908 0.92663 0.75989 0.82732 0.83878 0.85035 0.83941 0.82314 0.80332 0.91777 0.91562 0.91283 0.92651 0.92488 0.92604 0.89923 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.74 13.07 55.49 0.73 -26.01 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -5.98 8.52 -15.06 -0.13 -6.11 16 8 H 0.07 1.84 7.27 -52.49 -0.38 1.46 16 9 N -0.71 -16.04 4.53 -46.20 -0.21 -16.25 16 10 C 0.19 3.47 0.68 -130.70 -0.09 3.38 16 11 C 0.12 2.25 4.04 -4.04 -0.02 2.24 16 12 N -0.69 -12.74 5.22 -61.36 -0.32 -13.06 16 13 C 0.58 11.03 7.82 -12.49 -0.10 10.94 16 14 O -0.56 -12.14 16.90 5.28 0.09 -12.05 16 15 C -0.16 -2.66 6.12 -105.06 -0.64 -3.30 16 16 C -0.15 -2.32 10.44 -38.55 -0.40 -2.72 16 17 C 0.02 0.30 6.70 -84.00 -0.56 -0.26 16 18 C -0.07 -0.75 10.11 -39.28 -0.40 -1.15 16 19 C -0.14 -1.28 10.07 -39.50 -0.40 -1.68 16 20 C -0.14 -1.13 9.97 -39.91 -0.40 -1.53 16 21 C 0.04 0.39 10.89 -16.35 -0.18 0.21 16 22 N -0.34 -4.44 2.92 -60.42 -0.18 -4.61 16 23 C 0.01 0.19 11.37 -16.16 -0.18 0.01 16 24 C -0.12 -1.91 5.72 -25.07 -0.14 -2.06 16 25 C -0.12 -1.74 6.91 -24.74 -0.17 -1.91 16 26 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 27 C -0.13 -2.29 5.93 -25.61 -0.15 -2.44 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.38 9.22 7.45 -40.82 -0.30 8.91 16 30 H 0.06 1.34 7.46 -51.93 -0.39 0.95 16 31 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.40 7.24 6.97 -40.82 -0.28 6.95 16 33 H 0.16 2.18 7.53 -52.49 -0.40 1.79 16 34 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.18 2.24 8.06 -52.48 -0.42 1.81 16 39 H 0.06 0.93 7.79 -51.93 -0.40 0.53 16 40 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.68 7.36 -51.93 -0.38 1.30 16 46 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -31.88 377.54 -10.15 -42.03 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -6.70 Total: 15.68 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -4.23 Total: -8.66 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.02 Total: -59.93 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.88 -10.15 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.791 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds