Wall clock time and date at job start Tue Mar 31 2020 16:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47330 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47144 * 300.00502 * 3 2 1 6 6 H 1.48506 * 109.47212 * 60.00178 * 3 2 1 7 7 C 1.38811 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00390 * 174.37464 * 9 7 2 11 11 C 1.52999 * 110.01336 * 61.54963 * 10 9 7 12 12 N 1.46498 * 109.47208 * 55.26088 * 11 10 9 13 13 C 1.34777 * 120.00067 * 175.53815 * 12 11 10 14 14 O 1.21593 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.47498 * 119.99992 * 180.02562 * 13 12 11 16 16 C 1.41201 * 126.37319 * 0.03710 * 15 13 12 17 17 C 1.37991 * 106.86752 * 179.97438 * 16 15 13 18 18 C 1.41384 * 131.98901 * 180.02562 * 17 16 15 19 19 C 1.35742 * 119.33460 * 179.97438 * 18 17 16 20 20 C 1.40824 * 119.71910 * 359.97438 * 19 18 17 21 21 C 1.34532 * 120.58577 * 359.97438 * 20 19 18 22 22 N 1.37437 * 120.74137 * 0.04507 * 21 20 19 23 23 C 1.35132 * 131.28596 * 180.02562 * 22 21 20 24 24 C 1.54270 * 110.07436 * 182.96756 * 10 9 7 25 25 C 1.54887 * 104.19459 * 95.70009 * 24 10 9 26 26 C 1.54890 * 102.75024 * 37.93949 * 25 24 10 27 27 C 1.53878 * 110.03355 * 300.16142 * 10 9 7 28 28 H 0.96998 * 119.99882 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99753 * 354.37606 * 9 7 2 30 30 H 1.08997 * 109.47451 * 295.25997 * 11 10 9 31 31 H 1.09007 * 109.47330 * 175.25849 * 11 10 9 32 32 H 0.97002 * 120.00308 * 355.53713 * 12 11 10 33 33 H 1.07999 * 126.56602 * 359.93285 * 16 15 13 34 34 H 1.08009 * 120.33508 * 359.96901 * 18 17 16 35 35 H 1.08001 * 120.14236 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.70509 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.62985 * 180.02562 * 21 20 19 38 38 H 1.08004 * 125.61004 * 0.20445 * 23 22 21 39 39 H 1.08998 * 110.48545 * 214.37459 * 24 10 9 40 40 H 1.09000 * 110.48276 * 337.02092 * 24 10 9 41 41 H 1.08998 * 110.75328 * 279.62799 * 25 24 10 42 42 H 1.08993 * 110.75774 * 156.25856 * 25 24 10 43 43 H 1.09001 * 110.48764 * 203.37732 * 26 25 24 44 44 H 1.09003 * 110.48741 * 80.73710 * 26 25 24 45 45 H 1.09000 * 110.03073 * 359.94709 * 27 10 9 46 46 H 1.09000 * 110.03282 * 121.37832 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0527 -3.6537 -0.1255 11 6 3.0120 -3.8251 1.0540 12 7 2.2662 -3.7150 2.3101 13 6 2.8917 -3.9231 3.4857 14 8 4.0749 -4.2027 3.5037 15 6 2.1406 -3.8128 4.7503 16 6 0.7706 -3.4991 4.8860 17 6 0.4906 -3.5041 6.2372 18 6 -0.7023 -3.2629 6.9568 19 6 -0.6879 -3.3375 8.3121 20 6 0.5102 -3.6535 8.9813 21 6 1.6409 -3.8827 8.2892 22 7 1.6509 -3.8125 6.9167 23 6 2.6458 -3.9995 6.0215 24 6 1.0589 -4.8327 -0.1740 25 6 0.8677 -5.1063 -1.6865 26 6 2.2897 -4.8796 -2.2573 27 6 2.8352 -3.6836 -1.4500 28 1 -0.4850 0.8400 0.0004 29 1 0.3591 -2.3901 0.0822 30 1 3.7766 -3.0492 1.0162 31 1 3.4859 -4.8052 0.9976 32 1 1.3222 -3.4923 2.2958 33 1 0.0752 -3.2938 4.0856 34 1 -1.6158 -3.0216 6.4335 35 1 -1.5917 -3.1561 8.8748 36 1 0.5213 -3.7132 10.0596 37 1 2.5510 -4.1243 8.8181 38 1 3.6672 -4.2560 6.2610 39 1 1.4802 -5.7074 0.3215 40 1 0.1113 -4.5520 0.2857 41 1 0.1602 -4.3997 -2.1204 42 1 0.5428 -6.1329 -1.8553 43 1 2.2402 -4.6333 -3.3179 44 1 2.9098 -5.7619 -2.0982 45 1 2.6733 -2.7568 -2.0003 46 1 3.8984 -3.8202 -1.2526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753668973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:28 Heat of formation + Delta-G solvation = 24.384174 kcal Electronic energy + Delta-G solvation = -27645.220764 eV Core-core repulsion = 23920.736510 eV Total energy + Delta-G solvation = -3724.484254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.16650 -40.71536 -39.45911 -37.28381 -35.55828 -35.09667 -34.01391 -32.42503 -31.12602 -29.60676 -29.33473 -28.68267 -26.41343 -25.25669 -24.40464 -23.22267 -22.70915 -21.60320 -20.79605 -19.98617 -19.02088 -18.68167 -17.87611 -17.35891 -17.06030 -16.57483 -16.45513 -16.21737 -15.94917 -15.80625 -15.61606 -15.29354 -15.09005 -14.79765 -14.46689 -14.22921 -13.99940 -13.48955 -13.39771 -13.23773 -12.89966 -12.87718 -12.62606 -12.43237 -12.24321 -12.19165 -12.05591 -11.83195 -11.78150 -11.53805 -11.44250 -11.41401 -11.30754 -11.04091 -10.86563 -9.98979 -9.51123 -8.94847 -8.35189 -7.90309 -5.15819 -0.16803 0.38350 1.10850 1.43080 1.46033 1.53080 1.65840 2.44540 2.54014 2.58377 2.62290 3.40788 3.60800 3.76608 3.76690 3.86403 3.91152 3.96552 4.05888 4.16457 4.21487 4.29873 4.42618 4.51161 4.57555 4.59173 4.70218 4.77768 4.86443 4.89425 4.93196 4.99402 5.03589 5.15219 5.21516 5.24839 5.28826 5.32805 5.42392 5.42646 5.46620 5.57205 5.63762 5.68083 5.73649 5.89631 6.29596 6.33899 6.70695 7.32124 7.40990 8.14206 8.39472 9.32408 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003672 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.887926 B = 7623.788009 C = 8864.603765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.063 4.063 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.213 4.213 8 H 0.062 0.938 9 N -0.715 5.715 10 C 0.185 3.815 11 C 0.126 3.874 12 N -0.691 5.691 13 C 0.577 3.423 14 O -0.596 6.596 15 C -0.191 4.191 16 C -0.183 4.183 17 C 0.021 3.979 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.129 4.129 21 C 0.022 3.978 22 N -0.343 5.343 23 C 0.006 3.994 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.113 4.113 27 C -0.130 4.130 28 H 0.248 0.752 29 H 0.376 0.624 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.406 0.594 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 -12.837 15.101 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.346 4.346 8 H 0.080 0.920 9 N -0.355 5.355 10 C 0.094 3.906 11 C 0.000 4.000 12 N -0.339 5.339 13 C 0.366 3.634 14 O -0.480 6.480 15 C -0.199 4.199 16 C -0.207 4.207 17 C -0.084 4.084 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.095 4.095 22 N -0.006 5.006 23 C -0.128 4.128 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.170 4.170 28 H 0.057 0.943 29 H 0.209 0.791 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.242 0.758 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.202 0.798 37 H 0.209 0.791 38 H 0.209 0.791 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.864 -12.934 15.293 20.048 hybrid contribution -0.097 1.707 -0.385 1.752 sum -0.961 -11.228 14.909 18.688 Atomic orbital electron populations 1.69765 1.05883 1.25398 1.60058 1.25218 0.96080 0.99828 1.04475 0.85423 0.78225 0.81800 0.76472 1.20175 1.22107 1.22674 1.19273 0.90774 0.85048 1.39470 0.91982 1.42607 1.05701 1.00152 1.87030 1.20698 0.91584 0.86626 0.91660 1.21842 0.94672 0.99528 0.83952 1.45563 1.14251 1.69038 1.05026 1.17772 0.85822 0.76048 0.83748 1.90673 1.16868 1.52122 1.88304 1.19556 0.95164 1.12537 0.92597 1.21314 0.95084 1.09543 0.94778 1.19107 0.88229 1.09411 0.91608 1.20975 0.95548 1.00322 0.95143 1.21435 0.99917 0.99325 0.93521 1.21284 0.90897 1.00151 1.02538 1.22411 1.03197 1.04537 0.79328 1.41501 1.08905 1.43795 1.06403 1.22065 0.94421 1.09910 0.86428 1.22540 0.98383 0.96706 0.97772 1.22396 0.96898 1.01496 0.94379 1.22292 0.96400 0.97403 0.98947 1.22599 0.98982 0.99025 0.96444 0.94307 0.79084 0.95050 0.91326 0.75796 0.83179 0.82699 0.81726 0.79790 0.79146 0.79094 0.90002 0.91865 0.92984 0.89576 0.91666 0.90205 0.93106 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.72 13.07 21.65 0.28 -56.44 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.95 47.00 29.55 68.60 2.03 49.03 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 7 C -0.21 -11.42 8.52 84.03 0.72 -10.70 16 8 H 0.06 3.39 7.27 -2.91 -0.02 3.36 16 9 N -0.71 -33.21 4.53 -300.07 -1.36 -34.56 16 10 C 0.18 6.88 0.68 4.33 0.00 6.88 16 11 C 0.13 4.89 4.04 86.38 0.35 5.24 16 12 N -0.69 -26.52 5.22 -466.31 -2.43 -28.96 16 13 C 0.58 22.98 7.82 86.68 0.68 23.66 16 14 O -0.60 -26.71 16.90 -4.01 -0.07 -26.78 16 15 C -0.19 -6.60 6.12 -20.15 -0.12 -6.72 16 16 C -0.18 -5.80 10.44 22.94 0.24 -5.56 16 17 C 0.02 0.58 6.70 38.90 0.26 0.84 16 18 C -0.10 -2.05 10.11 22.47 0.23 -1.82 16 19 C -0.12 -1.71 10.07 22.32 0.22 -1.48 16 20 C -0.13 -1.53 9.97 22.05 0.22 -1.31 16 21 C 0.02 0.35 10.89 82.97 0.90 1.26 16 22 N -0.34 -8.48 2.92 -345.07 -1.01 -9.49 16 23 C 0.01 0.17 11.37 84.14 0.96 1.13 16 24 C -0.12 -3.52 5.72 31.67 0.18 -3.34 16 25 C -0.11 -3.11 6.91 31.88 0.22 -2.89 16 26 C -0.11 -3.09 6.83 31.67 0.22 -2.88 16 27 C -0.13 -4.61 5.93 31.32 0.19 -4.42 16 28 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.38 18.66 7.45 -92.70 -0.69 17.97 16 30 H 0.03 1.40 7.46 -2.39 -0.02 1.38 16 31 H 0.07 2.47 8.04 -2.38 -0.02 2.45 16 32 H 0.41 15.30 6.97 -92.71 -0.65 14.65 16 33 H 0.15 4.61 7.53 -2.91 -0.02 4.59 16 34 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.19 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.08 2.22 7.79 -2.39 -0.02 2.20 16 40 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 2.11 7.36 -2.39 -0.02 2.09 16 46 H 0.06 1.93 7.67 -2.39 -0.02 1.91 16 Total: -1.00 -72.08 377.54 3.03 -69.05 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.33 Total: 43.37 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.92 Total: -5.22 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -4.52 Total: -129.45 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.07 Total: -26.78 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -72.08 3.03 -69.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.429 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds