Wall clock time and date at job start Tue Mar 31 2020 15:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46956 * 2 1 4 4 C 1.38602 * 120.40480 * 124.99985 * 3 2 1 5 5 C 1.38598 * 118.56210 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.40106 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47349 * 125.02351 * 6 5 4 8 8 N 1.32279 * 119.19811 * 359.97438 * 5 4 3 9 9 C 1.32484 * 120.73911 * 0.02562 * 8 5 4 10 10 N 1.38404 * 119.21992 * 179.97438 * 9 8 5 11 11 C 1.46503 * 120.00489 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47448 * 180.02562 * 11 10 9 13 13 C 1.38299 * 119.93217 * 269.73027 * 12 11 10 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31562 * 120.00282 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00220 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47275 * 89.99838 * 21 19 17 23 23 H 1.48495 * 109.47094 * 210.00170 * 21 19 17 24 24 H 1.48506 * 109.46791 * 330.00186 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 N 1.32279 * 120.40083 * 305.29232 * 3 2 1 28 28 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46754 * 300.00029 * 1 2 3 30 30 H 1.09000 * 109.47142 * 60.00320 * 1 2 3 31 31 H 1.08993 * 109.47177 * 239.99964 * 2 1 3 32 32 H 1.09000 * 109.47142 * 119.99680 * 2 1 3 33 33 H 1.08009 * 120.71814 * 0.04381 * 4 3 2 34 34 H 1.09006 * 109.46887 * 245.01495 * 6 5 4 35 35 H 1.08997 * 109.47233 * 5.02180 * 6 5 4 36 36 H 1.09007 * 109.47477 * 59.99429 * 7 6 5 37 37 H 1.09001 * 109.47428 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.47140 * 299.99965 * 7 6 5 39 39 H 0.97000 * 120.00138 * 0.02562 * 10 9 8 40 40 H 1.09002 * 109.46848 * 59.99784 * 11 10 9 41 41 H 1.09001 * 109.46885 * 300.00398 * 11 10 9 42 42 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 43 43 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 44 44 H 0.96996 * 120.00604 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 46 46 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9126 1.8537 0.9792 5 6 3.3498 3.1684 0.9430 6 6 4.3066 3.6829 1.9875 7 6 5.5374 4.2796 1.3020 8 7 2.9171 3.9660 -0.0194 9 6 2.0755 3.5209 -0.9407 10 7 1.6425 4.3829 -1.9332 11 6 0.7114 3.9089 -2.9602 12 6 0.4007 5.0334 -3.9142 13 6 -0.6703 5.8725 -3.6663 14 6 -0.9542 6.9074 -4.5355 15 6 -0.1700 7.0977 -5.6658 16 8 -0.4504 8.1103 -6.5255 17 6 0.4156 8.3099 -7.5393 18 1 1.2403 7.6285 -7.6872 19 6 0.2477 9.3903 -8.3920 20 7 1.0930 9.5855 -9.3810 21 14 -1.1790 10.5688 -8.1366 22 1 -0.7576 11.6672 -7.2303 23 1 -1.5917 11.1373 -9.4448 24 1 -2.3218 9.8387 -7.5313 25 6 0.9014 6.2500 -5.9149 26 6 1.1836 5.2204 -5.0389 27 7 1.6340 2.2716 -0.9312 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2508 1.1809 1.7536 34 1 3.8147 4.4515 2.5838 35 1 4.6137 2.8617 2.6350 36 1 5.2303 5.1009 0.6544 37 1 6.2293 4.6522 2.0574 38 1 6.0294 3.5112 0.7056 39 1 1.9554 5.3009 -1.9488 40 1 -0.2095 3.5687 -2.4866 41 1 1.1647 3.0828 -3.5082 42 1 -1.2829 5.7208 -2.7898 43 1 -1.7881 7.5650 -4.3391 44 1 0.9753 10.3411 -9.9777 45 1 1.5129 6.3953 -6.7932 46 1 2.0163 4.5605 -5.2323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804426310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:52 Heat of formation + Delta-G solvation = 34.537740 kcal Electronic energy + Delta-G solvation = -26115.322580 eV Core-core repulsion = 22391.278618 eV Total energy + Delta-G solvation = -3724.043962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.09872 -39.33858 -37.38463 -35.86675 -35.75200 -33.36921 -32.45096 -31.41765 -30.70090 -30.34643 -29.24415 -26.10936 -25.58650 -24.53265 -23.66103 -22.42322 -22.17267 -21.10595 -20.31442 -18.01145 -17.82077 -17.29637 -17.22087 -15.63749 -15.55537 -15.23204 -14.98334 -14.74124 -14.45281 -14.25463 -14.15723 -14.06530 -13.94480 -13.83435 -13.40506 -13.12320 -12.91912 -12.73794 -12.41298 -12.26061 -12.02472 -11.89987 -11.68569 -11.52529 -11.45527 -11.35166 -10.96383 -10.88647 -10.81760 -10.76973 -10.29546 -10.23203 -10.13857 -9.47168 -9.06511 -8.94755 -8.37214 -8.00875 -7.48441 -6.49400 -4.16350 1.11812 1.19832 1.93029 2.04019 3.06376 3.17983 3.21565 3.35331 3.83297 3.97041 4.16275 4.17255 4.38856 4.65854 4.75350 4.84091 4.90610 4.97815 5.02558 5.05652 5.11913 5.13959 5.19118 5.31806 5.36870 5.42099 5.56063 5.58382 5.60088 5.70817 5.74288 5.75163 5.84140 5.85817 6.03150 6.03852 6.05698 6.25743 6.29379 6.46499 6.68666 6.87587 6.92469 7.13117 7.17045 7.20397 7.50565 7.57643 7.71523 7.94866 8.40493 8.85139 9.45833 10.57778 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002198 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.773389 B =12736.280153 C =13604.029459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C 0.221 3.779 4 C -0.299 4.299 5 C 0.222 3.778 6 C -0.073 4.073 7 C -0.143 4.143 8 N -0.575 5.575 9 C 0.572 3.428 10 N -0.688 5.688 11 C 0.197 3.803 12 C -0.208 4.208 13 C -0.054 4.054 14 C -0.195 4.195 15 C 0.168 3.832 16 O -0.213 6.213 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.224 4.224 26 C -0.050 4.050 27 N -0.569 5.569 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.134 0.866 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -16.426 21.467 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C 0.073 3.927 4 C -0.326 4.326 5 C 0.074 3.926 6 C -0.111 4.111 7 C -0.201 4.201 8 N -0.298 5.298 9 C 0.215 3.785 10 N -0.324 5.324 11 C 0.074 3.926 12 C -0.209 4.209 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.114 3.886 16 O -0.117 6.117 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.243 4.243 26 C -0.069 4.069 27 N -0.293 5.293 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.252 0.748 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.575 -15.535 20.335 25.719 hybrid contribution 0.035 0.378 0.450 0.589 sum 2.610 -15.156 20.785 25.856 Atomic orbital electron populations 1.21653 0.93742 1.01788 1.02868 1.20528 0.97292 0.89972 1.03333 1.21355 0.88665 0.95187 0.87492 1.22127 1.07281 0.98255 1.04902 1.21327 0.90866 0.89312 0.91143 1.20532 0.94456 1.01307 0.94844 1.21657 0.96189 1.01508 1.00756 1.67658 1.16996 1.39030 1.06148 1.19366 0.86409 0.85907 0.86802 1.44644 1.48916 1.12628 1.26221 1.19933 0.91879 0.94263 0.86501 1.19291 1.00969 1.01708 0.98933 1.20531 0.95875 0.93347 0.97522 1.20209 1.03468 1.02257 0.95543 1.19180 0.92536 0.87932 0.88906 1.83575 1.47602 1.44957 1.35549 1.20790 1.08313 1.13043 1.04537 0.87496 1.24490 0.98047 0.96881 0.94529 1.69642 1.35689 1.30155 1.15782 0.86173 0.82341 0.80580 0.77783 1.19799 1.20675 1.18315 1.21275 1.01541 0.98508 1.03021 1.20700 0.97127 0.96021 0.93026 1.67698 1.30360 1.02920 1.28353 0.92218 0.92979 0.91307 0.89578 0.90083 0.84544 0.89619 0.90045 0.91342 0.92198 0.92917 0.74778 0.91614 0.91610 0.86822 0.86364 0.90906 0.84792 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.78 37.16 0.36 -0.75 16 2 C -0.07 -0.57 6.37 -27.88 -0.18 -0.75 16 3 C 0.22 2.44 6.21 -82.27 -0.51 1.93 16 4 C -0.30 -2.99 9.42 -39.31 -0.37 -3.36 16 5 C 0.22 2.48 6.20 -82.26 -0.51 1.97 16 6 C -0.07 -0.58 6.36 -27.88 -0.18 -0.76 16 7 C -0.14 -1.17 9.78 37.16 0.36 -0.80 16 8 N -0.57 -7.87 10.05 -10.15 -0.10 -7.97 16 9 C 0.57 8.18 8.43 -322.81 -2.72 5.46 16 10 N -0.69 -9.56 5.70 -63.49 -0.36 -9.92 16 11 C 0.20 2.71 5.77 -5.19 -0.03 2.68 16 12 C -0.21 -3.28 5.25 -104.57 -0.55 -3.82 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.20 -3.72 9.99 -39.40 -0.39 -4.12 16 15 C 0.17 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.21 -5.48 8.59 0.05 0.00 -5.48 16 17 C -0.39 -10.82 9.95 30.89 0.31 -10.52 16 18 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 19 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 20 N -0.88 -24.93 13.96 55.48 0.77 -24.15 16 21 Si 0.91 21.32 28.62 -169.99 -4.86 16.46 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.22 -4.67 9.17 -39.40 -0.36 -5.03 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 27 N -0.57 -7.64 9.17 -10.16 -0.09 -7.73 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.45 7.94 -51.93 -0.41 0.03 16 33 H 0.14 0.95 7.95 -52.48 -0.42 0.54 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.46 7.94 -51.93 -0.41 0.05 16 36 H 0.07 0.68 7.98 -51.92 -0.41 0.27 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.41 5.77 8.58 -40.82 -0.35 5.42 16 40 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 43 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 44 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 2.95 5.64 -52.49 -0.30 2.66 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -29.91 388.55 -11.46 -41.37 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.78 Total: 6.78 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -5.89 Total: -15.21 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.22 Total: -49.77 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: 0.00 Total: -5.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.91 -11.46 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804426310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.910 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds