Wall clock time and date at job start Tue Mar 31 2020 15:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39722 * 119.59044 * 42.61676 * 3 2 1 5 5 C 1.37974 * 119.19679 * 180.02562 * 4 3 2 6 6 C 1.40241 * 118.40192 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.43848 * 180.02562 * 6 5 4 8 8 O 1.21574 * 119.99646 * 171.22168 * 7 6 5 9 9 N 1.34771 * 120.00065 * 351.21476 * 7 6 5 10 10 C 1.46961 * 120.36295 * 5.96722 * 9 7 6 11 11 C 1.52341 * 109.06908 * 68.32293 * 10 9 7 12 12 C 1.53789 * 109.15899 * 72.68291 * 11 10 9 13 13 C 1.52445 * 109.43952 * 282.15857 * 12 11 10 14 14 C 1.53962 * 110.71797 * 113.72951 * 13 12 11 15 15 C 1.52926 * 109.75284 * 315.63523 * 14 13 12 16 16 H 1.08998 * 109.46278 * 47.10527 * 15 14 13 17 17 N 1.46504 * 109.54137 * 167.18331 * 15 14 13 18 18 C 1.36934 * 119.99836 * 204.90152 * 17 15 14 19 19 H 1.08000 * 120.00201 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00121 * 179.97438 * 18 17 15 21 21 N 1.31628 * 119.99997 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00436 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46917 * 90.00224 * 22 20 18 24 24 H 1.48496 * 109.47517 * 210.00086 * 22 20 18 25 25 H 1.48496 * 109.46839 * 330.00449 * 22 20 18 26 26 C 1.45324 * 120.35968 * 185.93509 * 9 7 6 27 27 C 1.39659 * 119.11781 * 0.27906 * 6 5 4 28 28 N 1.31479 * 120.71066 * 359.42486 * 27 6 5 29 29 H 4.51257 * 14.17686 * 359.97438 * 4 2 1 30 30 H 1.07996 * 120.40301 * 0.03642 * 4 3 2 31 31 H 1.07999 * 120.79366 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.53468 * 188.19875 * 10 9 7 33 33 H 1.08999 * 109.53233 * 308.44356 * 10 9 7 34 34 H 1.09005 * 109.52223 * 192.59234 * 11 10 9 35 35 H 1.08999 * 109.52201 * 312.71310 * 11 10 9 36 36 H 1.09004 * 109.47473 * 42.15067 * 12 11 10 37 37 H 1.09006 * 109.47854 * 162.16731 * 12 11 10 38 38 H 1.09010 * 109.22950 * 234.04649 * 13 12 11 39 39 H 1.08995 * 109.23002 * 353.44890 * 13 12 11 40 40 H 1.09004 * 109.42832 * 75.72072 * 14 13 12 41 41 H 1.09000 * 109.42487 * 195.55714 * 14 13 12 42 42 H 0.97006 * 120.00209 * 24.89650 * 17 15 14 43 43 H 0.96993 * 119.99991 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.67842 * 343.10733 * 26 9 7 45 45 H 1.09002 * 109.67271 * 103.61037 * 26 9 7 46 46 H 1.08000 * 119.64208 * 179.73051 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -0.8932 -0.8227 5 6 4.6761 -0.8859 -0.8158 6 6 5.3342 0.0255 0.0225 7 6 6.8096 0.0723 0.0649 8 8 7.3724 0.9654 0.6680 9 7 7.5322 -0.8751 -0.5649 10 6 6.8668 -1.8819 -1.4035 11 6 6.2956 -1.2005 -2.6405 12 6 7.4483 -0.8199 -3.5847 13 6 8.1373 0.4362 -3.0637 14 6 9.5771 0.1225 -2.6178 15 6 9.5955 -1.1716 -1.8031 16 1 9.0170 -1.9358 -2.3222 17 7 10.9777 -1.6296 -1.6420 18 6 11.2382 -2.9558 -1.4216 19 1 10.4247 -3.6640 -1.3662 20 6 12.5479 -3.3899 -1.2695 21 7 13.5393 -2.5267 -1.3365 22 14 12.9033 -5.1989 -0.9682 23 1 13.0876 -5.8905 -2.2694 24 1 14.1402 -5.3320 -0.1574 25 1 11.7646 -5.8122 -0.2386 26 6 8.9780 -0.9119 -0.4225 27 6 4.5758 0.8847 0.8206 28 7 3.2620 0.8519 0.7824 29 1 -1.0500 -0.0010 -0.0002 30 1 2.7566 -1.5812 -1.4563 31 1 5.2356 -1.5653 -1.4417 32 1 7.5895 -2.6398 -1.7058 33 1 6.0599 -2.3501 -0.8398 34 1 5.6163 -1.8829 -3.1514 35 1 5.7544 -0.3019 -2.3442 36 1 8.1677 -1.6377 -3.6280 37 1 7.0531 -0.6303 -4.5828 38 1 8.1617 1.1864 -3.8543 39 1 7.5764 0.8275 -2.2150 40 1 10.2117 0.0067 -3.4964 41 1 9.9535 0.9417 -2.0051 42 1 11.7084 -0.9935 -1.6914 43 1 14.4545 -2.8301 -1.2305 44 1 9.3331 0.0432 -0.0355 45 1 9.2592 -1.7125 0.2616 46 1 5.0739 1.5870 1.4726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088415744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:54 Heat of formation + Delta-G solvation = 139.499528 kcal Electronic energy + Delta-G solvation = -28379.210596 eV Core-core repulsion = 24659.718118 eV Total energy + Delta-G solvation = -3719.492477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59991 -39.62818 -37.76953 -35.77867 -34.12419 -33.94901 -33.18667 -31.89450 -30.91956 -30.14842 -27.55392 -26.57732 -25.13675 -24.07977 -23.57150 -22.56488 -21.70732 -20.06719 -19.65716 -18.91211 -17.33210 -17.23459 -16.88546 -16.69936 -15.92277 -15.55877 -15.03579 -14.79245 -14.71445 -14.38982 -14.23496 -14.08174 -13.88193 -13.40665 -13.11243 -12.82838 -12.71690 -12.49999 -12.01450 -11.71612 -11.56602 -11.45806 -11.24551 -11.13964 -11.04450 -10.90910 -10.84196 -10.53666 -10.38064 -10.24969 -10.17161 -9.98329 -9.78912 -9.68762 -9.52798 -9.11649 -9.01511 -8.34858 -7.05906 -5.85018 -3.15162 0.11682 0.94381 2.27185 2.29957 3.05044 3.08950 3.37588 3.42533 3.44945 3.58129 3.76279 4.21966 4.33805 4.44120 4.51395 4.64334 4.72911 4.75778 4.84458 4.96494 5.22589 5.27354 5.28413 5.34322 5.41553 5.46226 5.50091 5.58011 5.71962 5.74007 5.76327 5.82109 5.88449 5.96182 6.06312 6.22462 6.25096 6.29639 6.39101 6.47004 6.54464 6.70456 6.75719 6.99105 7.05963 7.46307 7.58146 7.59290 8.21991 8.32843 9.44132 10.00352 10.34772 11.37036 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.003001 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.761691 B = 9327.363041 C = 9487.769325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.148 4.148 3 C 0.238 3.762 4 C -0.159 4.159 5 C -0.104 4.104 6 C -0.177 4.177 7 C 0.557 3.443 8 O -0.535 6.535 9 N -0.584 5.584 10 C 0.078 3.922 11 C -0.161 4.161 12 C -0.125 4.125 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.159 3.841 16 H 0.065 0.935 17 N -0.719 5.719 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.086 3.914 27 C 0.163 3.837 28 N -0.477 5.477 29 H 0.230 0.770 30 H 0.143 0.857 31 H 0.212 0.788 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.015 2.714 -2.982 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.149 4.149 3 C 0.104 3.896 4 C -0.179 4.179 5 C -0.128 4.128 6 C -0.182 4.182 7 C 0.345 3.655 8 O -0.414 6.414 9 N -0.316 5.316 10 C -0.044 4.044 11 C -0.198 4.198 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.048 3.952 16 H 0.082 0.918 17 N -0.359 5.359 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.039 4.039 27 C 0.004 3.996 28 N -0.185 5.185 29 H 0.247 0.753 30 H 0.161 0.839 31 H 0.228 0.772 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -23.077 3.566 -2.106 23.446 hybrid contribution 0.746 -1.301 -0.229 1.517 sum -22.330 2.265 -2.335 22.566 Atomic orbital electron populations 1.24950 0.95634 0.97676 0.97552 1.19372 0.91125 1.02143 1.02213 1.16844 0.88113 0.92128 0.92563 1.22063 0.94691 1.00437 1.00720 1.24611 0.95129 0.97000 0.96013 1.21187 0.95236 1.00385 1.01442 1.17922 0.85931 0.82099 0.79539 1.90786 1.72040 1.34650 1.43906 1.47731 1.08473 1.28821 1.46562 1.22349 0.98497 0.92286 0.91289 1.22735 0.98947 1.01710 0.96449 1.21837 0.97154 0.99516 0.97730 1.21652 0.96597 0.96935 1.00148 1.22025 0.95683 0.98260 1.00235 1.20910 0.88121 0.94390 0.91741 0.91757 1.42418 1.00762 1.06808 1.85930 1.19178 0.91875 0.84580 1.42001 0.91193 1.24766 0.95695 0.97695 1.02454 1.69662 0.98668 1.32930 1.56291 0.86215 0.77536 0.84873 0.77668 1.21668 1.21736 1.20733 1.22747 0.76167 1.03299 1.01679 1.22974 0.87861 0.94556 0.94254 1.67856 1.09735 1.21048 1.19897 0.75327 0.83885 0.77231 0.87653 0.89529 0.89902 0.90229 0.89919 0.92130 0.92833 0.92239 0.91648 0.92272 0.78035 0.93363 0.89754 0.91057 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 19.25 29.55 0.57 -0.46 16 2 C -0.15 -1.53 13.43 -38.84 -0.52 -2.05 16 3 C 0.24 2.77 6.59 -84.91 -0.56 2.21 16 4 C -0.16 -1.48 9.77 -39.12 -0.38 -1.86 16 5 C -0.10 -1.01 6.06 -38.93 -0.24 -1.25 16 6 C -0.18 -2.23 5.55 -104.76 -0.58 -2.81 16 7 C 0.56 8.43 6.10 -12.41 -0.08 8.36 16 8 O -0.54 -9.92 15.82 5.30 0.08 -9.83 16 9 N -0.58 -8.29 1.68 -202.33 -0.34 -8.63 16 10 C 0.08 0.83 4.78 -4.13 -0.02 0.81 16 11 C -0.16 -1.45 3.74 -26.66 -0.10 -1.55 16 12 C -0.13 -1.37 5.49 -26.60 -0.15 -1.52 16 13 C -0.12 -1.52 5.40 -26.51 -0.14 -1.67 16 14 C -0.12 -2.00 5.22 -26.27 -0.14 -2.14 16 15 C 0.16 2.86 2.30 -67.73 -0.16 2.70 16 16 H 0.07 1.10 3.29 -51.93 -0.17 0.93 16 17 N -0.72 -16.83 5.13 -53.24 -0.27 -17.10 16 18 C -0.25 -6.34 9.88 -15.06 -0.15 -6.49 16 19 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 22 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.09 1.51 5.63 -4.44 -0.03 1.48 16 27 C 0.16 2.12 10.75 -17.17 -0.18 1.93 16 28 N -0.48 -6.32 10.26 -10.78 -0.11 -6.43 16 29 H 0.23 0.66 7.80 -54.09 -0.42 0.24 16 30 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.21 1.67 1.52 -123.34 -0.19 1.48 16 32 H 0.11 1.19 6.07 -51.93 -0.32 0.88 16 33 H 0.09 0.74 5.56 -51.93 -0.29 0.45 16 34 H 0.08 0.51 7.95 -51.93 -0.41 0.09 16 35 H 0.08 0.77 4.70 -51.93 -0.24 0.53 16 36 H 0.08 1.03 5.47 -51.93 -0.28 0.74 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.06 0.85 5.38 -51.93 -0.28 0.57 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 42 H 0.39 9.85 7.80 -40.82 -0.32 9.53 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.08 1.64 6.75 -51.93 -0.35 1.29 16 45 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 46 H 0.17 2.15 7.67 -52.49 -0.40 1.75 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -32.23 356.82 -8.25 -40.48 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.74 Total: 10.74 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.94 Total: -4.64 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.00 Total: -58.58 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.23 -8.25 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.978 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds