Wall clock time and date at job start Tue Mar 31 2020 15:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39722 * 119.59044 * 42.61676 * 3 2 1 5 5 C 1.37974 * 119.19679 * 180.02562 * 4 3 2 6 6 C 1.40241 * 118.40192 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.43848 * 180.02562 * 6 5 4 8 8 O 1.21574 * 119.99646 * 171.22168 * 7 6 5 9 9 N 1.34771 * 120.00065 * 351.21476 * 7 6 5 10 10 C 1.46961 * 120.36295 * 5.96722 * 9 7 6 11 11 C 1.52341 * 109.06908 * 68.32293 * 10 9 7 12 12 C 1.53789 * 109.15899 * 72.68291 * 11 10 9 13 13 C 1.52445 * 109.43952 * 282.15857 * 12 11 10 14 14 C 1.53962 * 110.71797 * 113.72951 * 13 12 11 15 15 C 1.52926 * 109.75284 * 315.63523 * 14 13 12 16 16 H 1.08998 * 109.46278 * 47.10527 * 15 14 13 17 17 N 1.46504 * 109.54137 * 167.18331 * 15 14 13 18 18 C 1.36934 * 119.99836 * 204.90152 * 17 15 14 19 19 H 1.08000 * 120.00201 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00121 * 179.97438 * 18 17 15 21 21 N 1.31628 * 119.99997 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00436 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46917 * 90.00224 * 22 20 18 24 24 H 1.48496 * 109.47517 * 210.00086 * 22 20 18 25 25 H 1.48496 * 109.46839 * 330.00449 * 22 20 18 26 26 C 1.45324 * 120.35968 * 185.93509 * 9 7 6 27 27 C 1.39659 * 119.11781 * 0.27906 * 6 5 4 28 28 N 1.31479 * 120.71066 * 359.42486 * 27 6 5 29 29 H 4.51257 * 14.17686 * 359.97438 * 4 2 1 30 30 H 1.07996 * 120.40301 * 0.03642 * 4 3 2 31 31 H 1.07999 * 120.79366 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.53468 * 188.19875 * 10 9 7 33 33 H 1.08999 * 109.53233 * 308.44356 * 10 9 7 34 34 H 1.09005 * 109.52223 * 192.59234 * 11 10 9 35 35 H 1.08999 * 109.52201 * 312.71310 * 11 10 9 36 36 H 1.09004 * 109.47473 * 42.15067 * 12 11 10 37 37 H 1.09006 * 109.47854 * 162.16731 * 12 11 10 38 38 H 1.09010 * 109.22950 * 234.04649 * 13 12 11 39 39 H 1.08995 * 109.23002 * 353.44890 * 13 12 11 40 40 H 1.09004 * 109.42832 * 75.72072 * 14 13 12 41 41 H 1.09000 * 109.42487 * 195.55714 * 14 13 12 42 42 H 0.97006 * 120.00209 * 24.89650 * 17 15 14 43 43 H 0.96993 * 119.99991 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.67842 * 343.10733 * 26 9 7 45 45 H 1.09002 * 109.67271 * 103.61037 * 26 9 7 46 46 H 1.08000 * 119.64208 * 179.73051 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -0.8932 -0.8227 5 6 4.6761 -0.8859 -0.8158 6 6 5.3342 0.0255 0.0225 7 6 6.8096 0.0723 0.0649 8 8 7.3724 0.9654 0.6680 9 7 7.5322 -0.8751 -0.5649 10 6 6.8668 -1.8819 -1.4035 11 6 6.2956 -1.2005 -2.6405 12 6 7.4483 -0.8199 -3.5847 13 6 8.1373 0.4362 -3.0637 14 6 9.5771 0.1225 -2.6178 15 6 9.5955 -1.1716 -1.8031 16 1 9.0170 -1.9358 -2.3222 17 7 10.9777 -1.6296 -1.6420 18 6 11.2382 -2.9558 -1.4216 19 1 10.4247 -3.6640 -1.3662 20 6 12.5479 -3.3899 -1.2695 21 7 13.5393 -2.5267 -1.3365 22 14 12.9033 -5.1989 -0.9682 23 1 13.0876 -5.8905 -2.2694 24 1 14.1402 -5.3320 -0.1574 25 1 11.7646 -5.8122 -0.2386 26 6 8.9780 -0.9119 -0.4225 27 6 4.5758 0.8847 0.8206 28 7 3.2620 0.8519 0.7824 29 1 -1.0500 -0.0010 -0.0002 30 1 2.7566 -1.5812 -1.4563 31 1 5.2356 -1.5653 -1.4417 32 1 7.5895 -2.6398 -1.7058 33 1 6.0599 -2.3501 -0.8398 34 1 5.6163 -1.8829 -3.1514 35 1 5.7544 -0.3019 -2.3442 36 1 8.1677 -1.6377 -3.6280 37 1 7.0531 -0.6303 -4.5828 38 1 8.1617 1.1864 -3.8543 39 1 7.5764 0.8275 -2.2150 40 1 10.2117 0.0067 -3.4964 41 1 9.9535 0.9417 -2.0051 42 1 11.7084 -0.9935 -1.6914 43 1 14.4545 -2.8301 -1.2305 44 1 9.3331 0.0432 -0.0355 45 1 9.2592 -1.7125 0.2616 46 1 5.0739 1.5870 1.4726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088415744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:53 Heat of formation + Delta-G solvation = 119.298341 kcal Electronic energy + Delta-G solvation = -28380.086585 eV Core-core repulsion = 24659.718118 eV Total energy + Delta-G solvation = -3720.368467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.60820 -40.62330 -39.00219 -37.13354 -35.24687 -34.96848 -34.44722 -33.16159 -31.77153 -31.62682 -28.95466 -27.73062 -26.32728 -25.28632 -24.83029 -23.64750 -22.91280 -21.23218 -20.43710 -20.05385 -19.19139 -18.28791 -17.98888 -17.60675 -17.00682 -16.75246 -16.33871 -15.97573 -15.72951 -15.55459 -15.38978 -15.13636 -15.04656 -14.92350 -14.39327 -14.10226 -13.93206 -13.57628 -13.18983 -13.07003 -12.97640 -12.69266 -12.56928 -12.31432 -12.17836 -12.12281 -11.87702 -11.83122 -11.80050 -11.56508 -11.50603 -11.30037 -11.18055 -10.92815 -10.66436 -10.47670 -9.97852 -9.59964 -8.99118 -7.92300 -5.22098 -0.73662 0.13260 1.41921 1.49650 1.51264 1.59089 1.63533 1.89050 2.14175 2.58211 2.92097 2.93177 3.29731 3.41535 3.49876 3.62319 3.78714 3.86232 3.90888 3.93179 4.00946 4.12520 4.14332 4.25356 4.36130 4.47288 4.53647 4.58172 4.65820 4.67053 4.78076 4.84093 4.85521 4.95668 4.98870 5.04146 5.09342 5.19288 5.27354 5.36314 5.39245 5.42441 5.49761 5.57700 5.67874 6.27672 6.33150 6.46433 6.70768 7.03552 7.34636 8.08257 8.31689 9.31248 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.003001 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.761691 B = 9327.363041 C = 9487.769325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.216 4.216 3 C 0.229 3.771 4 C -0.147 4.147 5 C -0.087 4.087 6 C -0.191 4.191 7 C 0.557 3.443 8 O -0.583 6.583 9 N -0.581 5.581 10 C 0.066 3.934 11 C -0.157 4.157 12 C -0.123 4.123 13 C -0.109 4.109 14 C -0.119 4.119 15 C 0.162 3.838 16 H 0.086 0.914 17 N -0.734 5.734 18 C -0.234 4.234 19 H 0.085 0.915 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.304 1.304 25 H -0.266 1.266 26 C 0.102 3.898 27 C 0.152 3.848 28 N -0.505 5.505 29 H 0.272 0.728 30 H 0.183 0.817 31 H 0.234 0.766 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.555 0.473 -4.846 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.217 4.217 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.110 4.110 6 C -0.196 4.196 7 C 0.347 3.653 8 O -0.464 6.464 9 N -0.312 5.312 10 C -0.054 4.054 11 C -0.194 4.194 12 C -0.160 4.160 13 C -0.148 4.148 14 C -0.157 4.157 15 C 0.053 3.947 16 H 0.104 0.896 17 N -0.372 5.372 18 C -0.366 4.366 19 H 0.103 0.897 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.190 1.190 26 C -0.024 4.024 27 C -0.008 4.008 28 N -0.213 5.213 29 H 0.288 0.712 30 H 0.200 0.800 31 H 0.250 0.750 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -27.703 1.301 -3.991 28.019 hybrid contribution 1.921 -0.522 0.354 2.021 sum -25.782 0.779 -3.637 26.049 Atomic orbital electron populations 1.25984 0.96311 0.94277 0.94116 1.19676 0.91600 1.05155 1.05221 1.17321 0.89258 0.91804 0.92133 1.22446 0.94271 0.99920 0.99999 1.24812 0.95459 0.95920 0.94831 1.20905 0.93155 1.02221 1.03366 1.18327 0.87122 0.81312 0.78567 1.90756 1.73157 1.36591 1.45922 1.47680 1.06888 1.29566 1.47025 1.22775 0.99179 0.91484 0.91999 1.22775 0.98804 1.02568 0.95238 1.21818 0.97385 0.97354 0.99460 1.21630 0.94199 0.98858 1.00075 1.21940 0.97993 0.96591 0.99175 1.21105 0.85700 0.95740 0.92135 0.89632 1.42661 1.02572 1.06015 1.85973 1.19634 0.92075 0.85723 1.39163 0.89691 1.25581 0.95872 1.01640 1.03864 1.69835 0.98624 1.34778 1.58957 0.85178 0.77071 0.80349 0.77394 1.21272 1.23071 1.19030 1.22189 0.78795 1.00847 1.00531 1.22852 0.88212 0.94948 0.94740 1.67835 1.09572 1.22542 1.21388 0.71213 0.80000 0.75049 0.87927 0.86458 0.85005 0.90475 0.91177 0.89665 0.91713 0.93403 0.92415 0.94281 0.79839 0.94224 0.92583 0.93283 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 19.25 74.32 1.43 0.50 16 2 C -0.22 -3.87 13.43 30.02 0.40 -3.46 16 3 C 0.23 4.88 6.59 40.58 0.27 5.15 16 4 C -0.15 -2.17 9.77 22.57 0.22 -1.95 16 5 C -0.09 -1.41 6.06 22.69 0.14 -1.27 16 6 C -0.19 -4.69 5.55 -19.95 -0.11 -4.80 16 7 C 0.56 17.24 6.10 86.74 0.53 17.77 16 8 O -0.58 -23.10 15.82 -3.95 -0.06 -23.16 16 9 N -0.58 -16.34 1.68 -912.30 -1.54 -17.88 16 10 C 0.07 1.21 4.78 86.07 0.41 1.62 16 11 C -0.16 -2.13 3.74 30.64 0.11 -2.01 16 12 C -0.12 -2.29 5.49 30.68 0.17 -2.12 16 13 C -0.11 -2.78 5.40 30.74 0.17 -2.62 16 14 C -0.12 -3.94 5.22 30.89 0.16 -3.78 16 15 C 0.16 5.91 2.30 45.12 0.10 6.02 16 16 H 0.09 2.80 3.29 -2.39 -0.01 2.80 16 17 N -0.73 -35.37 5.13 -322.34 -1.65 -37.02 16 18 C -0.23 -12.18 9.88 84.03 0.83 -11.35 16 19 H 0.09 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 22 Si 0.97 44.57 29.55 68.60 2.03 46.59 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.10 3.75 5.63 86.75 0.49 4.24 16 27 C 0.15 4.06 10.75 85.09 0.91 4.98 16 28 N -0.50 -13.31 10.26 -188.03 -1.93 -15.24 16 29 H 0.27 0.01 7.80 -4.42 -0.03 -0.02 16 30 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.23 2.56 1.52 -69.47 -0.11 2.45 16 32 H 0.10 1.99 6.07 -2.39 -0.01 1.98 16 33 H 0.12 1.49 5.56 -2.39 -0.01 1.48 16 34 H 0.13 0.66 7.95 -2.38 -0.02 0.64 16 35 H 0.08 1.19 4.70 -2.39 -0.01 1.18 16 36 H 0.07 1.52 5.47 -2.39 -0.01 1.51 16 37 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.05 1.34 5.38 -2.39 -0.01 1.33 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.04 1.42 7.87 -2.39 -0.02 1.40 16 42 H 0.37 19.89 7.80 -92.70 -0.72 19.17 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.06 2.36 6.75 -2.39 -0.02 2.34 16 45 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 46 H 0.16 4.44 7.67 -2.91 -0.02 4.41 16 Total: -1.00 -76.09 356.82 4.05 -72.05 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.21 Total: 30.11 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.70 Total: 3.06 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -4.84 Total: -128.65 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.06 Total: -23.16 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -76.09 4.05 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.345 kcal (2) G-P(sol) polarization free energy of solvation -76.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds