Wall clock time and date at job start Tue Mar 31 2020 15:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.20246 * 2 1 4 4 C 1.54386 * 110.23308 * 121.89949 * 2 1 3 5 5 C 1.54541 * 101.77060 * 144.81384 * 4 2 1 6 6 H 1.08990 * 110.48203 * 93.64684 * 5 4 2 7 7 N 1.46498 * 110.47360 * 216.13891 * 5 4 2 8 8 C 1.39672 * 119.99766 * 203.17896 * 7 5 4 9 9 C 1.38980 * 120.04543 * 359.97438 * 8 7 5 10 10 C 1.38110 * 120.03303 * 180.02562 * 9 8 7 11 11 C 1.38209 * 120.13122 * 0.02757 * 10 9 8 12 12 C 1.38775 * 120.09220 * 359.97438 * 11 10 9 13 13 O 1.35902 * 120.01358 * 179.97438 * 12 11 10 14 14 C 1.42889 * 117.00453 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.47317 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.38615 * 119.96482 * 0.24988 * 12 11 10 25 25 C 1.51571 * 104.35494 * 334.89170 * 5 4 2 26 26 N 1.30751 * 141.62008 * 196.82072 * 25 5 4 27 27 C 1.34003 * 109.38765 * 179.56040 * 26 25 5 28 28 C 1.34567 * 108.02942 * 359.97438 * 27 26 25 29 29 N 1.35046 * 109.81807 * 16.40407 * 25 5 4 30 30 H 1.09002 * 109.46905 * 298.10308 * 1 2 3 31 31 H 1.08999 * 109.47186 * 58.09789 * 1 2 3 32 32 H 1.08999 * 109.47133 * 178.10211 * 1 2 3 33 33 H 1.08992 * 110.97379 * 26.69043 * 4 2 1 34 34 H 1.09003 * 111.00052 * 262.94423 * 4 2 1 35 35 H 0.96997 * 120.00805 * 23.18118 * 7 5 4 36 36 H 1.07999 * 119.98010 * 0.04735 * 9 8 7 37 37 H 1.08003 * 119.93246 * 179.97438 * 10 9 8 38 38 H 1.08005 * 119.95406 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.47532 * 60.00006 * 14 13 12 40 40 H 1.08998 * 109.47444 * 300.00067 * 14 13 12 41 41 H 1.08994 * 109.47074 * 60.00204 * 15 14 13 42 42 H 1.08998 * 109.47285 * 300.00039 * 15 14 13 43 43 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 44 44 H 1.07997 * 120.06073 * 179.70307 * 24 12 11 45 45 H 1.08004 * 125.99097 * 179.97438 * 27 26 25 46 46 H 1.08003 * 126.58236 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9065 1.0230 0.0000 4 6 2.0640 -0.7655 1.2298 5 6 3.3332 -1.4360 0.6572 6 1 4.2092 -0.8141 0.8414 7 7 3.5183 -2.7663 1.2422 8 6 4.7879 -3.3479 1.2666 9 6 5.8762 -2.6656 0.7358 10 6 7.1314 -3.2412 0.7596 11 6 7.3088 -4.4964 1.3103 12 6 6.2258 -5.1824 1.8419 13 8 6.4020 -6.4167 2.3826 14 6 7.7286 -6.9474 2.3697 15 6 7.7293 -8.3345 3.0152 16 6 9.1284 -8.8945 3.0011 17 1 9.9363 -8.3184 2.5746 18 6 9.3770 -10.1422 3.5324 19 7 8.3931 -10.8439 4.0512 20 14 11.1113 -10.8360 3.5155 21 1 11.1120 -12.1823 4.1420 22 1 11.5884 -10.9417 2.1132 23 1 12.0123 -9.9352 4.2784 24 6 4.9635 -4.6103 1.8158 25 6 3.0628 -1.5437 -0.8303 26 7 3.4773 -2.1619 -1.9053 27 6 2.7428 -1.7696 -2.9551 28 6 1.8373 -0.8748 -2.5189 29 7 2.0402 -0.7297 -1.1699 30 1 -0.3633 0.4841 0.9065 31 1 -0.3633 0.5431 -0.8724 32 1 -0.3633 -1.0271 -0.0340 33 1 1.3458 -1.5132 1.5660 34 1 2.3164 -0.0789 2.0380 35 1 2.7592 -3.2432 1.6125 36 1 5.7402 -1.6848 0.3048 37 1 7.9759 -2.7098 0.3462 38 1 8.2916 -4.9440 1.3271 39 1 8.3902 -6.2857 2.9288 40 1 8.0786 -7.0259 1.3404 41 1 7.0680 -8.9960 2.4557 42 1 7.3793 -8.2565 4.0445 43 1 7.4926 -10.4834 4.0604 44 1 4.1188 -5.1448 2.2247 45 1 2.8574 -2.1115 -3.9732 46 1 1.0944 -0.3672 -3.1164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294040788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:40 Heat of formation + Delta-G solvation = 57.579142 kcal Electronic energy + Delta-G solvation = -26443.987117 eV Core-core repulsion = 22720.942305 eV Total energy + Delta-G solvation = -3723.044812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.80041 -39.73305 -38.16261 -37.07000 -34.88269 -33.61934 -31.60245 -30.86265 -30.53421 -29.10505 -28.70127 -27.70087 -24.98707 -24.30979 -22.85855 -22.37831 -21.81888 -20.81826 -20.68009 -19.89260 -18.18306 -17.56737 -16.74434 -16.54317 -15.73795 -15.54088 -15.37093 -15.28532 -14.79727 -14.72353 -14.37762 -14.30675 -13.77158 -13.69935 -13.37954 -13.34016 -13.05830 -12.95433 -12.77238 -12.60341 -12.12315 -12.06508 -11.77974 -11.65123 -11.56825 -11.24320 -10.76696 -10.71568 -10.18008 -10.11101 -10.01269 -9.88076 -9.79549 -9.75412 -8.69398 -8.66645 -8.35833 -7.94154 -7.35969 -6.40555 -4.10838 1.69456 1.78216 1.91235 2.29342 2.83372 3.15077 3.44033 3.46623 3.48397 3.65240 3.83291 3.94078 4.05335 4.08911 4.21785 4.37648 4.55681 4.58637 4.65365 4.86096 4.93989 5.06359 5.13020 5.17806 5.27411 5.34288 5.38190 5.38532 5.43167 5.57908 5.62013 5.82030 6.01181 6.04010 6.07059 6.12257 6.40602 6.56988 6.58688 6.65610 6.72295 6.78500 6.90785 7.25879 7.36653 7.43026 7.58924 7.94523 8.02239 8.16578 8.40083 8.82163 9.61951 11.00892 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.001949 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.716272 B =14359.741086 C =14607.270824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.100 0.900 4 C -0.133 4.133 5 C 0.238 3.762 6 H 0.111 0.889 7 N -0.732 5.732 8 C 0.248 3.752 9 C -0.224 4.224 10 C -0.038 4.038 11 C -0.259 4.259 12 C 0.183 3.817 13 O -0.320 6.320 14 C 0.074 3.926 15 C 0.012 3.988 16 C -0.605 4.605 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 1.073 2.927 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.230 4.230 25 C 0.170 3.830 26 N -0.459 5.459 27 C -0.024 4.024 28 C -0.037 4.037 29 N -0.480 5.480 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.271 0.729 44 H 0.123 0.877 45 H 0.173 0.827 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 28.080 -8.630 34.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.118 0.882 4 C -0.171 4.171 5 C 0.128 3.872 6 H 0.128 0.872 7 N -0.363 5.363 8 C 0.147 3.853 9 C -0.246 4.246 10 C -0.057 4.057 11 C -0.279 4.279 12 C 0.135 3.865 13 O -0.233 6.233 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.644 4.644 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.901 3.099 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.253 4.253 25 C -0.094 4.094 26 N -0.177 5.177 27 C -0.173 4.173 28 C -0.169 4.169 29 N -0.166 5.166 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.237 0.763 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.190 0.810 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.046 26.363 -8.208 31.935 hybrid contribution -1.790 1.871 -0.776 2.703 sum -17.836 28.234 -8.983 34.583 Atomic orbital electron populations 1.22102 0.92656 1.03561 1.03518 1.22030 0.96170 0.96379 0.82479 0.88237 1.23147 0.96555 1.00530 0.96906 1.19774 0.98590 0.86234 0.82594 0.87163 1.44329 1.07536 1.17579 1.66855 1.17240 0.84656 0.90822 0.92611 1.20347 0.92202 1.01719 1.10375 1.20598 0.96246 0.93839 0.94985 1.21143 0.98983 0.98084 1.09686 1.18763 0.93049 0.84661 0.89987 1.86113 1.34025 1.28417 1.74703 1.23115 0.79297 0.97143 1.00484 1.19255 0.98421 0.89003 0.95843 1.21827 0.93071 1.05044 1.44421 0.92971 1.25895 1.05733 0.93829 0.93232 1.70766 1.01824 1.39779 1.41964 0.83489 0.73684 0.76280 0.76488 1.20656 1.21308 1.21330 1.19606 0.96241 0.96127 1.13367 1.25031 0.91753 0.95038 0.97612 1.69874 1.27054 1.23873 0.96883 1.22413 0.96184 0.99981 0.98701 1.22331 1.05860 1.06420 0.82249 1.46651 1.28596 1.34197 1.07106 0.90013 0.91633 0.91413 0.88592 0.87147 0.76344 0.86827 0.86329 0.85650 0.92933 0.92912 0.96337 0.96356 0.91881 0.85860 0.80973 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 9.45 37.16 0.35 -0.15 16 2 C 0.13 0.60 4.13 -66.92 -0.28 0.32 16 3 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 4 C -0.13 -0.55 6.36 -25.20 -0.16 -0.71 16 5 C 0.24 1.96 2.92 -67.85 -0.20 1.76 16 6 H 0.11 0.86 6.50 -51.93 -0.34 0.53 16 7 N -0.73 -7.53 5.32 -52.10 -0.28 -7.81 16 8 C 0.25 3.45 6.65 -83.81 -0.56 2.89 16 9 C -0.22 -3.13 9.22 -39.35 -0.36 -3.49 16 10 C -0.04 -0.56 10.03 -39.64 -0.40 -0.96 16 11 C -0.26 -4.46 9.04 -39.39 -0.36 -4.82 16 12 C 0.18 3.45 6.68 -39.24 -0.26 3.19 16 13 O -0.32 -6.97 10.13 -19.43 -0.20 -7.17 16 14 C 0.07 1.68 4.68 37.16 0.17 1.85 16 15 C 0.01 0.32 4.65 -27.88 -0.13 0.19 16 16 C -0.61 -17.56 9.11 -34.44 -0.31 -17.87 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 19 N -0.91 -28.25 13.65 55.43 0.76 -27.49 16 20 Si 1.07 25.44 29.90 -169.99 -5.08 20.35 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.23 -3.77 9.83 -39.24 -0.39 -4.15 16 25 C 0.17 1.88 8.24 -154.77 -1.27 0.60 16 26 N -0.46 -6.39 11.25 -10.54 -0.12 -6.51 16 27 C -0.02 -0.27 11.86 -17.90 -0.21 -0.48 16 28 C -0.04 -0.32 12.00 -16.45 -0.20 -0.51 16 29 N -0.48 -4.01 3.28 -105.24 -0.35 -4.35 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.36 7.58 -51.93 -0.39 -0.04 16 34 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.40 3.53 8.42 -40.82 -0.34 3.19 16 36 H 0.11 1.40 6.24 -52.49 -0.33 1.08 16 37 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.13 2.15 6.29 -52.48 -0.33 1.82 16 39 H 0.05 1.14 7.66 -51.93 -0.40 0.75 16 40 H 0.05 1.17 7.66 -51.93 -0.40 0.77 16 41 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 42 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 43 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 44 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 46 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -36.16 379.43 -10.86 -47.03 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.66 Total: 2.15 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -4.66 Total: -21.92 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.02 Total: -46.16 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.20 Total: -7.17 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.16 -10.86 -47.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294040788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.608 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds