Wall clock time and date at job start Tue Mar 31 2020 15:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.20246 * 2 1 4 4 C 1.54386 * 110.23308 * 121.89949 * 2 1 3 5 5 C 1.54541 * 101.77060 * 144.81384 * 4 2 1 6 6 H 1.08990 * 110.48203 * 93.64684 * 5 4 2 7 7 N 1.46498 * 110.47360 * 216.13891 * 5 4 2 8 8 C 1.39672 * 119.99766 * 203.17896 * 7 5 4 9 9 C 1.38980 * 120.04543 * 359.97438 * 8 7 5 10 10 C 1.38110 * 120.03303 * 180.02562 * 9 8 7 11 11 C 1.38209 * 120.13122 * 0.02757 * 10 9 8 12 12 C 1.38775 * 120.09220 * 359.97438 * 11 10 9 13 13 O 1.35902 * 120.01358 * 179.97438 * 12 11 10 14 14 C 1.42889 * 117.00453 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.47317 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.38615 * 119.96482 * 0.24988 * 12 11 10 25 25 C 1.51571 * 104.35494 * 334.89170 * 5 4 2 26 26 N 1.30751 * 141.62008 * 196.82072 * 25 5 4 27 27 C 1.34003 * 109.38765 * 179.56040 * 26 25 5 28 28 C 1.34567 * 108.02942 * 359.97438 * 27 26 25 29 29 N 1.35046 * 109.81807 * 16.40407 * 25 5 4 30 30 H 1.09002 * 109.46905 * 298.10308 * 1 2 3 31 31 H 1.08999 * 109.47186 * 58.09789 * 1 2 3 32 32 H 1.08999 * 109.47133 * 178.10211 * 1 2 3 33 33 H 1.08992 * 110.97379 * 26.69043 * 4 2 1 34 34 H 1.09003 * 111.00052 * 262.94423 * 4 2 1 35 35 H 0.96997 * 120.00805 * 23.18118 * 7 5 4 36 36 H 1.07999 * 119.98010 * 0.04735 * 9 8 7 37 37 H 1.08003 * 119.93246 * 179.97438 * 10 9 8 38 38 H 1.08005 * 119.95406 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.47532 * 60.00006 * 14 13 12 40 40 H 1.08998 * 109.47444 * 300.00067 * 14 13 12 41 41 H 1.08994 * 109.47074 * 60.00204 * 15 14 13 42 42 H 1.08998 * 109.47285 * 300.00039 * 15 14 13 43 43 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 44 44 H 1.07997 * 120.06073 * 179.70307 * 24 12 11 45 45 H 1.08004 * 125.99097 * 179.97438 * 27 26 25 46 46 H 1.08003 * 126.58236 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9065 1.0230 0.0000 4 6 2.0640 -0.7655 1.2298 5 6 3.3332 -1.4360 0.6572 6 1 4.2092 -0.8141 0.8414 7 7 3.5183 -2.7663 1.2422 8 6 4.7879 -3.3479 1.2666 9 6 5.8762 -2.6656 0.7358 10 6 7.1314 -3.2412 0.7596 11 6 7.3088 -4.4964 1.3103 12 6 6.2258 -5.1824 1.8419 13 8 6.4020 -6.4167 2.3826 14 6 7.7286 -6.9474 2.3697 15 6 7.7293 -8.3345 3.0152 16 6 9.1284 -8.8945 3.0011 17 1 9.9363 -8.3184 2.5746 18 6 9.3770 -10.1422 3.5324 19 7 8.3931 -10.8439 4.0512 20 14 11.1113 -10.8360 3.5155 21 1 11.1120 -12.1823 4.1420 22 1 11.5884 -10.9417 2.1132 23 1 12.0123 -9.9352 4.2784 24 6 4.9635 -4.6103 1.8158 25 6 3.0628 -1.5437 -0.8303 26 7 3.4773 -2.1619 -1.9053 27 6 2.7428 -1.7696 -2.9551 28 6 1.8373 -0.8748 -2.5189 29 7 2.0402 -0.7297 -1.1699 30 1 -0.3633 0.4841 0.9065 31 1 -0.3633 0.5431 -0.8724 32 1 -0.3633 -1.0271 -0.0340 33 1 1.3458 -1.5132 1.5660 34 1 2.3164 -0.0789 2.0380 35 1 2.7592 -3.2432 1.6125 36 1 5.7402 -1.6848 0.3048 37 1 7.9759 -2.7098 0.3462 38 1 8.2916 -4.9440 1.3271 39 1 8.3902 -6.2857 2.9288 40 1 8.0786 -7.0259 1.3404 41 1 7.0680 -8.9960 2.4557 42 1 7.3793 -8.2565 4.0445 43 1 7.4926 -10.4834 4.0604 44 1 4.1188 -5.1448 2.2247 45 1 2.8574 -2.1115 -3.9732 46 1 1.0944 -0.3672 -3.1164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294040788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:39 Heat of formation + Delta-G solvation = 35.536659 kcal Electronic energy + Delta-G solvation = -26444.942950 eV Core-core repulsion = 22720.942305 eV Total energy + Delta-G solvation = -3724.000646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.45359 -41.07844 -39.28906 -37.92612 -36.02836 -35.57354 -32.57801 -32.22833 -31.35778 -30.52578 -29.67729 -28.46017 -26.61095 -25.36864 -24.08747 -23.54360 -22.91905 -22.13327 -21.42705 -20.70866 -19.47594 -18.79451 -18.13953 -17.51599 -17.02304 -16.93617 -16.67446 -16.40121 -15.73507 -15.58180 -15.44003 -15.17008 -14.91698 -14.72379 -14.53649 -14.49345 -14.18920 -13.80633 -13.73612 -13.65368 -13.42107 -13.13818 -13.06154 -12.63979 -12.55298 -12.33092 -12.30335 -12.00790 -11.90577 -11.79152 -11.64970 -11.07008 -10.89841 -10.79422 -10.59876 -10.55077 -9.37606 -9.28067 -8.77137 -8.46244 -6.48968 0.53467 0.64137 1.05086 1.53767 1.63212 1.75259 1.82667 2.01719 2.24910 2.52331 2.65939 2.86655 2.99934 3.10252 3.36125 3.58677 3.76143 3.94028 4.03717 4.09496 4.14303 4.14472 4.16141 4.28101 4.32197 4.43059 4.52561 4.58407 4.60953 4.66582 4.69049 4.71668 4.83784 4.89959 4.96085 5.07103 5.14789 5.21407 5.26057 5.35604 5.46416 5.58754 5.64202 5.84255 5.88860 6.07620 6.11432 6.28112 6.44200 6.54007 6.70544 7.21957 7.34711 8.64329 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.001949 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.716272 B =14359.741086 C =14607.270824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.122 0.878 4 C -0.121 4.121 5 C 0.231 3.769 6 H 0.118 0.882 7 N -0.722 5.722 8 C 0.258 3.742 9 C -0.220 4.220 10 C -0.035 4.035 11 C -0.277 4.277 12 C 0.148 3.852 13 O -0.342 6.342 14 C 0.093 3.907 15 C 0.013 3.987 16 C -0.621 4.621 17 H 0.062 0.938 18 C -0.037 4.037 19 N -0.932 5.932 20 Si 1.125 2.875 21 H -0.282 1.282 22 H -0.266 1.266 23 H -0.264 1.264 24 C -0.244 4.244 25 C 0.148 3.852 26 N -0.515 5.515 27 C -0.060 4.060 28 C -0.023 4.023 29 N -0.475 5.475 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.408 0.592 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.056 0.944 41 H -0.006 1.006 42 H -0.003 1.003 43 H 0.255 0.745 44 H 0.125 0.875 45 H 0.179 0.821 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.793 31.389 -8.911 37.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.140 0.860 4 C -0.159 4.159 5 C 0.123 3.877 6 H 0.135 0.865 7 N -0.352 5.352 8 C 0.154 3.846 9 C -0.242 4.242 10 C -0.054 4.054 11 C -0.297 4.297 12 C 0.102 3.898 13 O -0.256 6.256 14 C 0.018 3.982 15 C -0.025 4.025 16 C -0.659 4.659 17 H 0.080 0.920 18 C -0.235 4.235 19 N -0.569 5.569 20 Si 0.945 3.055 21 H -0.207 1.207 22 H -0.191 1.191 23 H -0.189 1.189 24 C -0.267 4.267 25 C -0.117 4.117 26 N -0.235 5.235 27 C -0.207 4.207 28 C -0.156 4.156 29 N -0.160 5.160 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.161 0.839 35 H 0.245 0.755 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.064 0.936 44 H 0.143 0.857 45 H 0.197 0.803 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -16.604 29.741 -8.490 35.104 hybrid contribution -1.832 1.023 -0.774 2.236 sum -18.436 30.764 -9.264 37.042 Atomic orbital electron populations 1.22089 0.91402 1.02952 1.04883 1.22411 0.97146 0.96972 0.80876 0.86022 1.23250 0.94346 1.00841 0.97465 1.20169 1.01093 0.85075 0.81413 0.86473 1.44447 1.06353 1.18461 1.65906 1.17294 0.86333 0.89846 0.91077 1.20633 0.91804 1.02377 1.09358 1.20912 0.97634 0.92889 0.93958 1.21193 0.98314 0.99284 1.10915 1.19101 0.94739 0.83981 0.91952 1.86026 1.32981 1.30521 1.76118 1.22662 0.80394 0.94944 1.00159 1.19146 0.97351 0.91323 0.94643 1.22230 0.93973 1.05514 1.44135 0.91999 1.27646 1.09266 0.94509 0.92062 1.70905 1.01673 1.40395 1.43883 0.82853 0.68959 0.75817 0.77903 1.20747 1.19117 1.18924 1.19742 0.95497 0.97277 1.14231 1.25361 0.92631 0.95547 0.98124 1.69755 1.29162 1.25993 0.98554 1.22729 0.97442 1.01633 0.98942 1.22772 1.05126 1.05018 0.82660 1.46941 1.27696 1.33614 1.07709 0.87654 0.91384 0.92879 0.88029 0.83877 0.75526 0.84774 0.83593 0.86161 0.92106 0.92562 0.98731 0.98436 0.93569 0.85675 0.80347 0.78123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 9.45 71.98 0.68 0.28 16 2 C 0.13 0.67 4.13 45.37 0.19 0.85 16 3 H 0.12 0.18 8.14 -2.39 -0.02 0.17 16 4 C -0.12 -0.54 6.36 31.59 0.20 -0.34 16 5 C 0.23 3.22 2.92 45.05 0.13 3.35 16 6 H 0.12 1.47 6.50 -2.39 -0.02 1.46 16 7 N -0.72 -13.69 5.32 -318.75 -1.70 -15.38 16 8 C 0.26 6.97 6.65 38.20 0.25 7.22 16 9 C -0.22 -5.79 9.22 22.42 0.21 -5.59 16 10 C -0.04 -1.00 10.03 22.23 0.22 -0.78 16 11 C -0.28 -9.66 9.04 22.39 0.20 -9.45 16 12 C 0.15 5.78 6.68 22.49 0.15 5.93 16 13 O -0.34 -15.69 10.13 -92.45 -0.94 -16.63 16 14 C 0.09 4.40 4.68 71.98 0.34 4.73 16 15 C 0.01 0.71 4.65 29.85 0.14 0.85 16 16 C -0.62 -36.69 9.11 25.60 0.23 -36.46 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C -0.04 -2.22 5.46 84.65 0.46 -1.75 16 19 N -0.93 -59.61 13.65 21.45 0.29 -59.32 16 20 Si 1.13 50.71 29.90 68.60 2.05 52.77 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.24 -8.13 9.83 22.49 0.22 -7.91 16 25 C 0.15 3.05 8.24 138.33 1.14 4.19 16 26 N -0.52 -14.25 11.25 -187.25 -2.11 -16.36 16 27 C -0.06 -1.30 11.86 83.52 0.99 -0.31 16 28 C -0.02 -0.35 12.00 83.01 1.00 0.65 16 29 N -0.48 -6.78 3.28 -486.88 -1.60 -8.38 16 30 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.10 0.39 7.58 -2.39 -0.02 0.37 16 34 H 0.14 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.41 6.58 8.42 -92.71 -0.78 5.80 16 36 H 0.13 2.99 6.24 -2.91 -0.02 2.97 16 37 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.12 4.21 6.29 -2.91 -0.02 4.19 16 39 H 0.06 2.73 7.66 -2.39 -0.02 2.71 16 40 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 41 H -0.01 -0.34 8.01 -2.39 -0.02 -0.36 16 42 H 0.00 -0.16 8.01 -2.39 -0.02 -0.18 16 43 H 0.25 16.68 7.22 -92.70 -0.67 16.01 16 44 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 45 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 46 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -82.42 379.43 3.08 -79.35 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.31 Total: 18.48 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 6.75 Total: -34.53 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -5.11 Total: -99.44 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.94 Total: -16.63 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.77 kcal Total: -82.42 3.08 -79.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294040788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.883 kcal (2) G-P(sol) polarization free energy of solvation -82.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds