Wall clock time and date at job start Tue Mar 31 2020 15:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49305 * 2 1 4 4 C 1.53197 * 109.49460 * 239.90320 * 2 1 3 5 5 N 1.46924 * 108.77039 * 185.41060 * 4 2 1 6 6 C 1.36937 * 120.62849 * 233.60772 * 5 4 2 7 7 H 1.07997 * 120.00486 * 27.67846 * 6 5 4 8 8 C 1.38820 * 120.00114 * 207.67576 * 6 5 4 9 9 N 1.31614 * 119.99597 * 17.37403 * 8 6 5 10 10 Si 1.86796 * 120.00180 * 197.37066 * 8 6 5 11 11 H 1.48497 * 109.47101 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47181 * 120.00322 * 10 8 6 13 13 H 1.48503 * 109.46910 * 240.00359 * 10 8 6 14 14 C 1.46929 * 118.74148 * 53.61056 * 5 4 2 15 15 C 1.53190 * 108.77189 * 306.38937 * 14 5 4 16 16 C 1.53038 * 109.49860 * 120.06522 * 2 1 3 17 17 H 1.08999 * 109.46060 * 61.29505 * 16 2 1 18 18 N 1.46497 * 109.45798 * 301.32204 * 16 2 1 19 19 C 1.34786 * 119.99693 * 155.00137 * 18 16 2 20 20 O 1.21608 * 120.00055 * 0.02562 * 19 18 16 21 21 C 1.47377 * 119.99775 * 180.02562 * 19 18 16 22 22 C 1.39318 * 120.34640 * 359.72498 * 21 19 18 23 23 C 1.38277 * 120.19761 * 179.75921 * 22 21 19 24 24 C 1.38053 * 120.88393 * 0.50218 * 23 22 21 25 25 C 1.38976 * 120.27063 * 359.76069 * 24 23 22 26 26 N 1.37797 * 133.37315 * 179.97438 * 25 24 23 27 27 H 0.97000 * 125.07727 * 0.03712 * 26 25 24 28 28 C 1.36555 * 109.84916 * 180.02562 * 26 25 24 29 29 C 1.34543 * 109.89964 * 359.97438 * 28 26 25 30 30 C 1.40660 * 119.51847 * 359.97438 * 25 24 23 31 31 H 1.09003 * 109.46964 * 299.93293 * 1 2 3 32 32 H 1.09010 * 109.46863 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47199 * 59.93833 * 1 2 3 34 34 H 1.08999 * 109.58849 * 305.19452 * 4 2 1 35 35 H 1.08998 * 109.58401 * 65.62717 * 4 2 1 36 36 H 0.97003 * 120.00035 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58441 * 186.60490 * 14 5 4 38 38 H 1.08994 * 109.58420 * 66.17462 * 14 5 4 39 39 H 1.09001 * 109.49888 * 294.67956 * 15 14 5 40 40 H 1.09004 * 109.52508 * 174.60376 * 15 14 5 41 41 H 0.96999 * 120.00475 * 335.00487 * 18 16 2 42 42 H 1.08001 * 119.89802 * 359.97438 * 22 21 19 43 43 H 1.08006 * 119.55248 * 180.23904 * 23 22 21 44 44 H 1.08005 * 119.86413 * 179.73557 * 24 23 22 45 45 H 1.07998 * 125.04931 * 180.02562 * 28 26 25 46 46 H 1.08003 * 126.49684 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8294 -1.1694 6 6 4.2935 -0.3794 -2.1942 7 1 3.9466 0.4202 -2.8318 8 6 5.5393 -0.9511 -2.4137 9 7 5.8283 -2.1217 -1.8860 10 14 6.8055 -0.0591 -3.4579 11 1 6.2383 1.2294 -3.9304 12 1 8.0205 0.2037 -2.6456 13 1 7.1644 -0.9010 -4.6274 14 6 4.1054 -1.4266 0.0311 15 6 3.5709 -0.6946 1.2661 16 6 2.0409 -0.7227 1.2485 17 1 1.6968 -1.7569 1.2358 18 7 1.5269 -0.0520 2.4452 19 6 1.3989 -0.7369 3.5990 20 8 1.7105 -1.9115 3.6467 21 6 0.8812 -0.0624 4.8028 22 6 0.5275 1.2844 4.7577 23 6 0.0375 1.9129 5.8877 24 6 -0.1002 1.2260 7.0773 25 6 0.2492 -0.1168 7.1553 26 7 0.2249 -1.0433 8.1751 27 1 -0.0733 -0.8672 9.0811 28 6 0.6830 -2.2463 7.7195 29 6 1.0130 -2.1480 6.4189 30 6 0.7440 -0.7717 6.0130 31 1 -0.3633 0.5128 0.8906 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5148 -0.8894 34 1 1.6053 -1.7220 -1.2975 35 1 1.7637 -0.1585 -2.1388 36 1 6.6989 -2.5211 -2.0390 37 1 5.1896 -1.3244 -0.0135 38 1 3.8376 -2.4817 0.0874 39 1 3.9160 0.3393 1.2539 40 1 3.9335 -1.1884 2.1677 41 1 1.2786 0.8849 2.4073 42 1 0.6330 1.8382 3.8366 43 1 -0.2372 2.9564 5.8400 44 1 -0.4807 1.7344 7.9509 45 1 0.7670 -3.1436 8.3146 46 1 1.4029 -2.9376 5.7936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942940310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:13 Heat of formation + Delta-G solvation = 42.280269 kcal Electronic energy + Delta-G solvation = -27687.673128 eV Core-core repulsion = 23963.964907 eV Total energy + Delta-G solvation = -3723.708221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44145 -39.61278 -37.64082 -36.73129 -34.46057 -32.67225 -32.06548 -31.12709 -30.16323 -29.31177 -28.85442 -25.84416 -25.18431 -23.81140 -22.20217 -21.84617 -21.08095 -20.78278 -20.26850 -19.38085 -18.08653 -16.89364 -16.62497 -16.18967 -15.74837 -15.23793 -14.90453 -14.73707 -14.26478 -14.19472 -13.96850 -13.76800 -13.45053 -13.20280 -13.05719 -12.82559 -12.73590 -12.56357 -12.09054 -11.87756 -11.73681 -11.56946 -11.41776 -11.24560 -11.02167 -10.76215 -10.59925 -10.27793 -10.16522 -9.95007 -9.85078 -9.72737 -9.68358 -9.34291 -8.61250 -8.45515 -8.37217 -7.87099 -6.64330 -5.74570 -3.16988 0.57069 1.37021 2.58900 2.90251 3.04313 3.39515 3.46370 3.47739 3.49857 3.94974 4.52592 4.54831 4.64597 4.78488 4.90765 5.04079 5.17512 5.23094 5.36616 5.38949 5.45357 5.56376 5.60239 5.68147 5.71876 5.96448 5.99199 6.05418 6.17005 6.19496 6.22479 6.31454 6.34210 6.46512 6.47575 6.51874 6.62331 6.70331 6.73297 6.85656 6.90660 7.01783 7.04304 7.30179 7.43694 7.72985 7.83762 7.84746 8.48627 8.54149 9.24937 9.88595 10.45247 11.33862 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.002727 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.767362 B =10265.382946 C =10691.386446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.158 3.842 17 H 0.082 0.918 18 N -0.718 5.718 19 C 0.554 3.446 20 O -0.532 6.532 21 C -0.082 4.082 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.109 4.109 25 C 0.084 3.916 26 N -0.598 5.598 27 H 0.415 0.585 28 C 0.043 3.957 29 C -0.181 4.181 30 C -0.059 4.059 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.253 0.747 37 H 0.089 0.911 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.393 0.607 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.172 0.828 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 6.632 20.062 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.089 0.911 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.048 3.952 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.100 0.900 18 N -0.368 5.368 19 C 0.341 3.659 20 O -0.409 6.409 21 C -0.086 4.086 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.023 4.023 26 N -0.202 5.202 27 H 0.251 0.749 28 C -0.082 4.082 29 C -0.206 4.206 30 C -0.065 4.065 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.227 0.773 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.189 0.811 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.856 5.654 20.146 25.096 hybrid contribution 0.472 0.978 0.005 1.086 sum -13.384 6.632 20.152 25.084 Atomic orbital electron populations 1.21776 0.95821 1.01613 1.00780 1.21972 0.94495 1.00575 0.96535 0.91109 1.20889 0.85970 0.96607 0.93739 1.44116 0.99299 1.71471 1.16628 1.19210 0.98187 1.12282 1.08536 0.91621 1.25046 0.99938 0.95384 0.99318 1.70050 1.21789 1.14620 1.48017 0.86246 0.81765 0.79220 0.79673 1.20290 1.21599 1.21764 1.20759 0.99400 0.93096 0.81984 1.22575 0.93943 1.01487 1.00741 1.21052 0.94504 0.96883 0.82070 0.89958 1.46224 1.65935 1.14184 1.10488 1.18102 0.78343 0.86564 0.82940 1.90755 1.49750 1.15796 1.84632 1.19510 1.02421 0.93697 0.92940 1.21128 0.99740 0.93319 0.98915 1.20692 1.00457 0.99801 0.91845 1.20129 1.03249 0.90776 0.98859 1.18184 1.03869 0.91633 0.88580 1.41704 1.58277 1.08761 1.11424 0.74884 1.21972 1.01417 0.88910 0.95919 1.22008 1.08064 0.96076 0.94467 1.19003 1.01514 0.94344 0.91647 0.93454 0.92884 0.92782 0.96189 0.92431 0.93666 0.89269 0.96158 0.92717 0.92740 0.77251 0.85497 0.85167 0.86066 0.81079 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.03 37.16 0.34 -1.61 16 2 C -0.11 -1.93 2.46 -90.50 -0.22 -2.16 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.23 5.80 -3.71 -0.02 3.20 16 5 N -0.59 -14.93 2.99 -172.32 -0.52 -15.45 16 6 C -0.25 -6.94 9.59 -15.06 -0.14 -7.08 16 7 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 9 N -0.90 -26.54 11.19 55.49 0.62 -25.91 16 10 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.17 4.30 5.31 -3.71 -0.02 4.28 16 15 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 16 C 0.16 2.83 1.88 -67.89 -0.13 2.71 16 17 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 18 N -0.72 -10.75 4.32 -54.86 -0.24 -10.99 16 19 C 0.55 9.11 7.73 -12.54 -0.10 9.02 16 20 O -0.53 -10.58 14.75 5.27 0.08 -10.50 16 21 C -0.08 -1.14 5.90 -104.75 -0.62 -1.76 16 22 C -0.11 -1.19 9.53 -39.17 -0.37 -1.56 16 23 C -0.11 -0.96 9.99 -39.64 -0.40 -1.36 16 24 C -0.11 -0.98 10.05 -39.38 -0.40 -1.37 16 25 C 0.08 0.92 7.27 -84.00 -0.61 0.31 16 26 N -0.60 -4.94 6.06 -10.66 -0.06 -5.01 16 27 H 0.41 1.92 8.96 -40.82 -0.37 1.56 16 28 C 0.04 0.40 11.82 -16.76 -0.20 0.20 16 29 C -0.18 -2.37 10.24 -37.78 -0.39 -2.75 16 30 C -0.06 -0.82 6.15 -104.85 -0.64 -1.46 16 31 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 32 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.39 4.76 6.34 -40.82 -0.26 4.50 16 42 H 0.13 1.09 6.40 -52.49 -0.34 0.75 16 43 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 45 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.16 2.26 7.16 -52.48 -0.38 1.89 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -33.93 368.64 -10.36 -44.29 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.61 Total: 5.83 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -4.16 Total: -4.61 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.20 Total: -57.36 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.93 -10.36 -44.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942940310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.573 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds