Wall clock time and date at job start Tue Mar 31 2020 15:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.52417 * 2 1 4 4 C 1.53188 * 109.49971 * 239.91964 * 2 1 3 5 5 N 1.46920 * 108.77451 * 185.41673 * 4 2 1 6 6 C 1.34784 * 120.63159 * 233.58250 * 5 4 2 7 7 O 1.21578 * 119.99722 * 356.18362 * 6 5 4 8 8 C 1.47651 * 120.00202 * 176.18033 * 6 5 4 9 9 C 1.40204 * 119.97100 * 50.88433 * 8 6 5 10 10 C 1.36327 * 120.66628 * 179.71172 * 9 8 6 11 11 C 1.39362 * 120.23693 * 0.55626 * 10 9 8 12 12 N 1.37397 * 133.24949 * 179.71609 * 11 10 9 13 13 H 0.97005 * 125.00941 * 359.97438 * 12 11 10 14 14 C 1.36859 * 109.98222 * 180.02562 * 12 11 10 15 15 C 1.34193 * 109.96083 * 0.02562 * 14 12 11 16 16 C 1.40879 * 119.63781 * 359.72258 * 11 10 9 17 17 C 1.39147 * 119.97605 * 231.15363 * 8 6 5 18 18 C 1.46923 * 118.74310 * 53.60510 * 5 4 2 19 19 C 1.53198 * 108.77567 * 306.39269 * 18 5 4 20 20 C 1.53040 * 109.30803 * 54.63408 * 19 18 5 21 21 H 1.08992 * 109.46409 * 58.65919 * 20 19 18 22 22 N 1.46501 * 109.45680 * 178.61576 * 20 19 18 23 23 C 1.36941 * 120.00065 * 275.07059 * 22 20 19 24 24 H 1.07994 * 119.99805 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99958 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99934 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99880 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47005 * 59.99947 * 27 25 23 29 29 H 1.48503 * 109.46966 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47432 * 300.00138 * 27 25 23 31 31 H 1.08994 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47515 * 300.08372 * 1 2 3 33 33 H 1.09006 * 109.46734 * 60.08246 * 1 2 3 34 34 H 1.09001 * 109.58559 * 305.19722 * 4 2 1 35 35 H 1.08997 * 109.58789 * 65.62345 * 4 2 1 36 36 H 1.07996 * 119.66963 * 359.97404 * 9 8 6 37 37 H 1.08001 * 119.87828 * 180.30226 * 10 9 8 38 38 H 1.07998 * 125.02027 * 180.02562 * 14 12 11 39 39 H 1.07999 * 126.54418 * 180.02562 * 15 14 12 40 40 H 1.08007 * 120.30415 * 0.02562 * 17 8 6 41 41 H 1.09003 * 109.58655 * 66.17887 * 18 5 4 42 42 H 1.09003 * 109.59032 * 186.60445 * 18 5 4 43 43 H 1.09000 * 109.49852 * 174.58292 * 19 18 5 44 44 H 1.08997 * 109.49454 * 294.67953 * 19 18 5 45 45 H 0.97008 * 119.99861 * 95.06688 * 22 20 19 46 46 H 0.97009 * 119.99735 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1694 6 6 4.2812 -0.3864 -2.1782 7 8 3.7710 0.0418 -3.1952 8 6 5.7516 -0.4215 -2.0480 9 6 6.3919 -1.6055 -1.6558 10 6 7.7491 -1.6554 -1.5368 11 6 8.5182 -0.5219 -1.7935 12 7 9.8687 -0.2718 -1.7536 13 1 10.5482 -0.9214 -1.5144 14 6 10.1137 1.0294 -2.0999 15 6 8.9587 1.6568 -2.3703 16 6 7.8862 0.6754 -2.1827 17 6 6.5001 0.7220 -2.3092 18 6 4.1052 -1.4266 0.0309 19 6 3.5708 -0.6949 1.2662 20 6 2.0407 -0.7231 1.2484 21 1 1.6966 -1.7572 1.2354 22 7 1.5264 -0.0529 2.4453 23 6 1.3963 -0.7491 3.6173 24 1 1.6725 -1.7923 3.6591 25 6 0.9094 -0.1140 4.7515 26 7 0.5724 1.1573 4.7003 27 14 0.7313 -1.0639 6.3500 28 1 2.0590 -1.5798 6.7697 29 1 0.1936 -0.1650 7.4027 30 1 -0.2008 -2.2021 6.1483 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8908 34 1 1.6053 -1.7216 -1.2979 35 1 1.7638 -0.1579 -2.1388 36 1 5.8046 -2.4880 -1.4500 37 1 8.2295 -2.5755 -1.2385 38 1 11.0921 1.4842 -2.1483 39 1 8.8417 2.6877 -2.6703 40 1 6.0106 1.6376 -2.6069 41 1 3.8375 -2.4818 0.0869 42 1 5.1896 -1.3245 -0.0136 43 1 3.9333 -1.1896 2.1673 44 1 3.9159 0.3389 1.2542 45 1 1.2780 0.8841 2.4076 46 1 0.2325 1.6013 5.4931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036169721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:01 Heat of formation + Delta-G solvation = 38.293726 kcal Electronic energy + Delta-G solvation = -27617.387502 eV Core-core repulsion = 23893.506412 eV Total energy + Delta-G solvation = -3723.881090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51130 -40.08263 -37.73715 -36.66682 -34.54119 -32.82088 -32.23604 -31.42861 -29.99271 -29.21091 -29.07204 -26.38066 -25.09338 -23.48095 -22.94296 -22.00677 -21.59283 -21.06809 -19.86446 -18.99385 -18.30251 -17.25724 -17.04537 -16.08101 -16.03238 -15.08122 -14.94219 -14.67073 -14.37741 -14.22095 -14.03690 -13.85346 -13.70547 -13.39625 -13.27017 -12.94584 -12.73683 -12.64242 -12.39291 -12.25114 -11.87941 -11.53891 -11.43751 -11.12265 -11.10515 -10.90717 -10.77139 -10.58106 -10.36040 -10.21689 -10.00868 -9.75960 -9.66477 -9.58326 -8.88376 -8.46827 -8.33749 -7.98911 -6.94229 -5.75993 -3.04417 0.90151 1.14659 2.47113 2.80165 2.84706 3.17277 3.43250 3.47970 3.48954 3.73322 4.45680 4.53182 4.58759 4.63787 4.82388 5.05962 5.13504 5.22280 5.30104 5.31548 5.34973 5.44304 5.48546 5.56752 5.69491 5.70401 5.73235 5.82991 5.84829 6.01746 6.10723 6.12922 6.20230 6.28376 6.36382 6.39095 6.44768 6.47720 6.48493 6.59264 6.69986 6.85594 6.85822 6.96648 7.10264 7.21285 7.58473 7.69285 8.30319 8.42402 9.53593 10.11750 10.46672 11.46508 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.002998 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.256721 B = 9336.920171 C =10425.083945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.564 3.436 7 O -0.546 6.546 8 C -0.149 4.149 9 C -0.068 4.068 10 C -0.134 4.134 11 C 0.110 3.890 12 N -0.594 5.594 13 H 0.416 0.584 14 C 0.044 3.956 15 C -0.194 4.194 16 C -0.118 4.118 17 C -0.014 4.014 18 C 0.098 3.902 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.047 0.953 22 N -0.721 5.721 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.171 0.829 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.946 -4.257 -14.777 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.352 3.648 7 O -0.425 6.425 8 C -0.153 4.153 9 C -0.088 4.088 10 C -0.155 4.155 11 C 0.001 3.999 12 N -0.197 5.197 13 H 0.252 0.748 14 C -0.081 4.081 15 C -0.219 4.219 16 C -0.122 4.122 17 C -0.033 4.033 18 C -0.025 4.025 19 C -0.192 4.192 20 C 0.074 3.926 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.188 0.812 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.742 -4.200 -15.119 23.685 hybrid contribution 0.304 -0.468 1.270 1.387 sum 18.045 -4.669 -13.849 23.222 Atomic orbital electron populations 1.21656 0.94119 1.01746 1.01821 1.21744 0.96544 1.00082 0.94637 0.91243 1.21719 0.78303 1.00853 0.99330 1.48079 1.07048 1.59988 1.17953 1.18261 0.86395 0.77182 0.82929 1.90758 1.75173 1.47504 1.29075 1.19541 0.93017 0.95332 1.07447 1.20649 0.93624 0.97277 0.97215 1.19641 0.93058 0.96241 1.06553 1.18385 0.83568 0.95967 1.01936 1.41768 1.05880 1.11540 1.60506 0.74764 1.21818 0.99855 0.83731 1.02733 1.21762 0.90390 0.99499 1.10226 1.19106 0.93072 0.93717 1.06327 1.20510 0.91099 0.97385 0.94317 1.22151 0.98637 0.97035 0.84665 1.22677 1.00215 1.00495 0.95831 1.20198 0.90407 0.95629 0.86393 0.93466 1.42408 1.76490 1.11432 1.05751 1.19170 1.35891 0.94054 0.87738 0.91317 1.24722 1.02141 0.96013 0.98015 1.69653 1.50008 1.09478 1.28947 0.86303 0.77706 0.78713 0.83660 1.21358 1.21779 1.21334 0.93069 0.90767 0.93828 0.91552 0.89354 0.84941 0.85727 0.81170 0.83351 0.85188 0.91523 0.89457 0.90686 0.92189 0.78223 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.16 0.34 -1.90 16 2 C -0.11 -1.85 2.46 -90.50 -0.22 -2.08 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.12 1.82 5.71 -3.72 -0.02 1.80 16 5 N -0.60 -8.91 2.97 -173.95 -0.52 -9.43 16 6 C 0.56 8.92 7.21 -12.41 -0.09 8.83 16 7 O -0.55 -10.27 16.47 5.30 0.09 -10.19 16 8 C -0.15 -2.03 4.99 -104.98 -0.52 -2.55 16 9 C -0.07 -0.75 7.27 -39.53 -0.29 -1.04 16 10 C -0.13 -1.31 10.00 -39.85 -0.40 -1.71 16 11 C 0.11 1.14 7.27 -83.95 -0.61 0.53 16 12 N -0.59 -4.39 6.05 -10.61 -0.06 -4.45 16 13 H 0.42 1.74 8.96 -40.82 -0.37 1.37 16 14 C 0.04 0.31 11.81 -16.73 -0.20 0.11 16 15 C -0.19 -1.82 11.09 -37.64 -0.42 -2.24 16 16 C -0.12 -1.39 6.36 -105.15 -0.67 -2.06 16 17 C -0.01 -0.18 9.79 -38.86 -0.38 -0.56 16 18 C 0.10 1.34 5.36 -3.71 -0.02 1.32 16 19 C -0.15 -2.59 5.66 -26.61 -0.15 -2.74 16 20 C 0.18 3.51 2.19 -67.89 -0.15 3.36 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.38 4.41 -53.39 -0.24 -17.61 16 23 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 27 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.38 7.03 -51.93 -0.36 1.02 16 36 H 0.13 1.26 7.06 -52.49 -0.37 0.89 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.08 4.56 -51.93 -0.24 0.84 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.38 10.02 7.50 -40.82 -0.31 9.71 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -33.32 371.39 -10.12 -43.44 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.64 Total: 10.56 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.05 Total: -7.91 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.09 Total: -58.54 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.32 -10.12 -43.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036169721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.736 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds