Wall clock time and date at job start Tue Mar 31 2020 15:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52267 * 2 1 4 4 C 1.53187 * 109.50028 * 239.91364 * 2 1 3 5 5 N 1.46917 * 108.77523 * 185.41438 * 4 2 1 6 6 C 1.34779 * 120.63131 * 233.57980 * 5 4 2 7 7 O 1.21594 * 119.99871 * 5.81417 * 6 5 4 8 8 C 1.47505 * 120.00512 * 185.80878 * 6 5 4 9 9 C 1.39348 * 120.20550 * 53.84174 * 8 6 5 10 10 C 1.38321 * 120.49455 * 180.02562 * 9 8 6 11 11 C 1.37907 * 120.59197 * 0.02562 * 10 9 8 12 12 C 1.39531 * 119.99229 * 359.97438 * 11 10 9 13 13 C 1.46574 * 133.95793 * 180.27018 * 12 11 10 14 14 C 1.34204 * 106.89423 * 180.09424 * 13 12 11 15 15 N 1.36904 * 109.88356 * 359.65058 * 14 13 12 16 16 H 0.97004 * 125.01662 * 180.24553 * 15 14 13 17 17 C 1.37117 * 109.96952 * 0.23049 * 15 14 13 18 18 C 1.46926 * 118.74398 * 53.86292 * 5 4 2 19 19 C 1.53627 * 108.53856 * 306.09285 * 18 5 4 20 20 C 1.53041 * 109.24378 * 54.85305 * 19 18 5 21 21 H 1.09004 * 109.45893 * 58.52957 * 20 19 18 22 22 N 1.46498 * 109.46233 * 178.49100 * 20 19 18 23 23 C 1.36941 * 120.00121 * 275.07174 * 22 20 19 24 24 H 1.08000 * 119.99518 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00287 * 179.97438 * 23 22 20 26 26 N 1.31628 * 119.99779 * 359.97438 * 25 23 22 27 27 Si 1.86790 * 120.00333 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47340 * 59.99565 * 27 25 23 29 29 H 1.48495 * 109.47470 * 179.97438 * 27 25 23 30 30 H 1.48508 * 109.47260 * 299.99947 * 27 25 23 31 31 H 1.08997 * 109.47128 * 180.08890 * 1 2 3 32 32 H 1.09001 * 109.47354 * 300.08617 * 1 2 3 33 33 H 1.08999 * 109.46759 * 60.08485 * 1 2 3 34 34 H 1.09000 * 109.58682 * 65.62555 * 4 2 1 35 35 H 1.09008 * 109.69889 * 305.27272 * 4 2 1 36 36 H 1.08000 * 119.74967 * 0.02966 * 9 8 6 37 37 H 1.08001 * 119.69918 * 179.97438 * 10 9 8 38 38 H 1.08007 * 120.00121 * 179.97438 * 11 10 9 39 39 H 1.07998 * 126.55450 * 0.02562 * 13 12 11 40 40 H 1.08007 * 125.05837 * 179.97438 * 14 13 12 41 41 H 1.09005 * 109.58707 * 65.91848 * 18 5 4 42 42 H 1.08998 * 109.59061 * 186.35415 * 18 5 4 43 43 H 1.09000 * 109.63409 * 294.86279 * 19 18 5 44 44 H 1.09001 * 109.46032 * 174.73587 * 19 18 5 45 45 H 0.96999 * 120.00239 * 95.06543 * 22 20 19 46 46 H 0.96998 * 119.99961 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 3.5046 -0.8292 -1.1694 6 6 4.2812 -0.3867 -2.1781 7 8 3.7807 0.2002 -3.1182 8 6 5.7381 -0.6141 -2.1418 9 6 6.2426 -1.9008 -1.9643 10 6 7.6077 -2.1209 -1.9288 11 6 8.4916 -1.0715 -2.0679 12 6 8.0111 0.2262 -2.2469 13 6 8.6512 1.5324 -2.4271 14 6 7.6663 2.4358 -2.5495 15 7 6.4501 1.8124 -2.4700 16 1 5.5909 2.2580 -2.5348 17 6 6.6256 0.4650 -2.2856 18 6 4.1051 -1.4318 0.0286 19 6 3.5709 -0.6949 1.2662 20 6 2.0408 -0.7229 1.2485 21 1 1.6967 -1.7571 1.2355 22 7 1.5265 -0.0527 2.4453 23 6 1.3964 -0.7488 3.6174 24 1 1.6726 -1.7920 3.6593 25 6 0.9095 -0.1136 4.7516 26 7 0.5734 1.1580 4.7006 27 14 0.7314 -1.0634 6.3501 28 1 2.0591 -1.5794 6.7700 29 1 0.1949 -0.1642 7.4031 30 1 -0.2008 -2.2016 6.1485 31 1 -0.3633 -1.0276 0.0016 32 1 -0.3634 0.5152 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.7639 -0.1581 -2.1388 35 1 1.6054 -1.7217 -1.3003 36 1 5.5626 -2.7325 -1.8536 37 1 7.9847 -3.1234 -1.7900 38 1 9.5557 -1.2541 -2.0383 39 1 9.7125 1.7302 -2.4548 40 1 7.8117 3.4961 -2.6948 41 1 3.8338 -2.4862 0.0823 42 1 5.1896 -1.3331 -0.0173 43 1 3.9159 0.3390 1.2541 44 1 3.9333 -1.1889 2.1676 45 1 1.2781 0.8842 2.4076 46 1 0.2336 1.6019 5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036188317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:39 Heat of formation + Delta-G solvation = 34.037375 kcal Electronic energy + Delta-G solvation = -28002.278701 eV Core-core repulsion = 24278.213041 eV Total energy + Delta-G solvation = -3724.065660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54535 -39.94394 -37.66498 -36.89637 -34.60836 -33.01876 -32.01005 -31.45479 -29.72808 -29.30240 -29.00330 -26.47092 -25.18727 -23.69496 -22.62599 -21.94371 -21.66091 -21.14825 -19.98342 -19.26054 -17.82760 -17.20432 -17.05934 -16.31788 -15.86586 -15.18527 -15.10723 -14.85708 -14.51048 -14.14746 -14.08351 -13.78586 -13.68214 -13.33721 -13.30288 -12.99229 -12.75561 -12.45489 -12.36678 -11.97574 -11.89988 -11.62592 -11.54295 -11.50773 -11.18633 -10.93855 -10.81681 -10.64324 -10.42848 -10.24720 -9.97875 -9.79400 -9.67188 -9.63442 -8.91799 -8.52111 -8.40818 -7.89464 -6.98441 -5.79400 -3.08195 0.69920 1.46117 2.39841 2.74003 3.00787 3.08869 3.41419 3.46262 3.47105 3.71561 4.39988 4.55543 4.56566 4.80704 4.83482 5.03671 5.10627 5.19017 5.23359 5.27409 5.36112 5.38195 5.51267 5.59587 5.63132 5.66159 5.72840 5.74438 5.79839 5.94017 6.05228 6.13309 6.16600 6.29678 6.33572 6.36770 6.41757 6.47305 6.51639 6.55051 6.61982 6.79678 6.89709 6.93561 7.03589 7.32412 7.47433 7.66261 8.15025 8.38836 9.50154 10.07457 10.42348 11.43062 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.003136 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.950822 B = 8925.990795 C = 9389.257019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.559 3.441 7 O -0.550 6.550 8 C -0.134 4.134 9 C -0.063 4.063 10 C -0.154 4.154 11 C -0.052 4.052 12 C -0.116 4.116 13 C -0.205 4.205 14 C 0.053 3.947 15 N -0.587 5.587 16 H 0.420 0.580 17 C 0.139 3.861 18 C 0.103 3.897 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.172 0.828 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -3.010 -15.726 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.348 3.652 7 O -0.430 6.430 8 C -0.140 4.140 9 C -0.083 4.083 10 C -0.173 4.173 11 C -0.071 4.071 12 C -0.120 4.120 13 C -0.230 4.230 14 C -0.073 4.073 15 N -0.188 5.188 16 H 0.258 0.742 17 C 0.029 3.971 18 C -0.021 4.021 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.166 0.834 40 H 0.189 0.811 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.985 -2.712 -16.056 21.464 hybrid contribution -0.510 0.073 1.063 1.181 sum 13.475 -2.639 -14.993 20.330 Atomic orbital electron populations 1.21657 0.94058 1.01811 1.01829 1.21730 0.96595 0.99956 0.94615 0.91399 1.21748 0.78220 1.00940 0.99453 1.48125 1.07101 1.59652 1.17910 1.18338 0.86267 0.78432 0.82184 1.90760 1.75167 1.42344 1.34700 1.18786 0.91702 0.92777 1.10738 1.20981 0.95889 0.94487 0.96961 1.20785 0.92536 0.99118 1.04831 1.20653 0.99655 0.90369 0.96405 1.19185 0.91498 0.94234 1.07111 1.21684 0.98722 0.90383 1.12175 1.21911 0.83519 0.98596 1.03273 1.41810 1.08877 1.05563 1.62581 0.74220 1.17913 0.94085 0.83886 1.01217 1.22112 0.98401 0.97121 0.84417 1.22752 1.00234 1.00287 0.95831 1.20202 0.90372 0.95691 0.86387 0.93371 1.42397 1.76497 1.11412 1.05753 1.19176 1.36030 0.94094 0.87720 0.91268 1.24724 1.02031 0.96007 0.98039 1.69651 1.49967 1.09478 1.29001 0.86296 0.77754 0.78717 0.83575 1.21304 1.21754 1.21287 0.92997 0.90734 0.93851 0.89392 0.91375 0.85169 0.85321 0.85648 0.83372 0.81079 0.91352 0.89837 0.92393 0.90525 0.78258 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 37.16 0.34 -1.86 16 2 C -0.11 -1.80 2.46 -90.50 -0.22 -2.02 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.74 5.72 -3.72 -0.02 1.72 16 5 N -0.60 -8.63 2.97 -173.74 -0.52 -9.15 16 6 C 0.56 8.58 7.16 -12.48 -0.09 8.49 16 7 O -0.55 -9.87 16.50 5.28 0.09 -9.79 16 8 C -0.13 -1.82 4.62 -104.87 -0.48 -2.31 16 9 C -0.06 -0.71 7.74 -39.14 -0.30 -1.01 16 10 C -0.15 -1.47 10.00 -39.67 -0.40 -1.87 16 11 C -0.05 -0.52 10.09 -39.22 -0.40 -0.92 16 12 C -0.12 -1.37 6.37 -105.15 -0.67 -2.04 16 13 C -0.20 -2.02 11.09 -37.64 -0.42 -2.43 16 14 C 0.05 0.50 11.82 -16.71 -0.20 0.30 16 15 N -0.59 -6.89 6.04 -10.45 -0.06 -6.96 16 16 H 0.42 4.74 8.96 -40.82 -0.37 4.38 16 17 C 0.14 1.86 6.98 -83.76 -0.59 1.27 16 18 C 0.10 1.39 5.58 -3.48 -0.02 1.37 16 19 C -0.15 -2.55 5.67 -26.38 -0.15 -2.70 16 20 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 21 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 22 N -0.72 -17.23 4.41 -53.38 -0.24 -17.46 16 23 C -0.24 -6.38 9.93 -15.06 -0.15 -6.52 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 27 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 30 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 35 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.13 1.25 7.73 -52.49 -0.41 0.84 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.06 5.37 -51.93 -0.28 0.78 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.38 9.93 7.50 -40.82 -0.31 9.62 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -32.28 373.17 -10.13 -42.41 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.72 Total: 12.93 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -4.01 Total: -7.66 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.09 Total: -60.45 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.28 -10.13 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036188317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.448 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds