Wall clock time and date at job start Tue Mar 31 2020 15:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47419 * 2 1 4 4 C 1.53001 * 109.46899 * 240.00446 * 2 1 3 5 5 C 1.53000 * 109.47213 * 175.00002 * 4 2 1 6 6 H 1.09003 * 109.47256 * 54.99462 * 5 4 2 7 7 C 1.52995 * 109.47205 * 175.00013 * 5 4 2 8 8 N 1.46509 * 109.46996 * 295.00194 * 5 4 2 9 9 C 1.34777 * 119.99924 * 155.00318 * 8 5 4 10 10 O 1.21587 * 120.00146 * 359.97438 * 9 8 5 11 11 C 1.47550 * 119.99779 * 179.72577 * 9 8 5 12 12 C 1.38701 * 120.38710 * 354.34729 * 11 9 8 13 13 C 1.38967 * 120.53905 * 179.70208 * 12 11 9 14 14 C 1.36205 * 121.23645 * 0.58317 * 13 12 11 15 15 C 1.40719 * 120.19938 * 359.72268 * 14 13 12 16 16 N 1.33685 * 120.93406 * 180.02562 * 15 14 13 17 17 C 1.31067 * 121.33843 * 180.02562 * 16 15 14 18 18 C 1.39339 * 121.70517 * 359.96043 * 17 16 15 19 19 C 1.36671 * 119.87318 * 0.02562 * 18 17 16 20 20 C 1.40469 * 118.16861 * 0.02562 * 19 18 17 21 21 N 1.46501 * 109.47566 * 120.00602 * 2 1 3 22 22 C 1.36935 * 119.99765 * 275.00099 * 21 2 1 23 23 H 1.08004 * 120.00308 * 359.97438 * 22 21 2 24 24 C 1.38817 * 120.00285 * 179.97438 * 22 21 2 25 25 N 1.31608 * 120.00380 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99664 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47072 * 89.99618 * 26 24 22 28 28 H 1.48501 * 109.47198 * 210.00200 * 26 24 22 29 29 H 1.48508 * 109.46974 * 329.99910 * 26 24 22 30 30 H 1.08998 * 109.47612 * 59.99222 * 1 2 3 31 31 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47040 * 299.99404 * 1 2 3 33 33 H 1.08995 * 109.47049 * 54.99988 * 4 2 1 34 34 H 1.08997 * 109.47208 * 294.99882 * 4 2 1 35 35 H 1.09007 * 109.46989 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47434 * 299.99616 * 7 5 4 37 37 H 1.08997 * 109.47503 * 60.00052 * 7 5 4 38 38 H 0.96999 * 119.99920 * 334.99201 * 8 5 4 39 39 H 1.07999 * 119.72639 * 0.02562 * 12 11 9 40 40 H 1.08000 * 119.38102 * 180.26027 * 13 12 11 41 41 H 1.08004 * 119.90357 * 179.69781 * 14 13 12 42 42 H 1.08003 * 119.14512 * 179.97438 * 17 16 15 43 43 H 1.07998 * 120.06200 * 179.97438 * 18 17 16 44 44 H 1.08003 * 120.91875 * 180.02562 * 19 18 17 45 45 H 0.96993 * 120.00257 * 94.98961 * 21 2 1 46 46 H 0.96996 * 120.00504 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3870 7 6 4.0850 -1.4381 -2.4927 8 7 3.9479 0.7895 -1.4925 9 6 5.1612 1.2136 -1.0868 10 8 5.9376 0.4321 -0.5722 11 6 5.5493 2.6250 -1.2722 12 6 4.7216 3.4949 -1.9665 13 6 5.0812 4.8263 -2.1377 14 6 6.2541 5.3104 -1.6426 15 6 7.1281 4.4628 -0.9370 16 7 8.2827 4.9226 -0.4444 17 6 9.1028 4.1401 0.2136 18 6 8.8136 2.7948 0.4329 19 6 7.6490 2.2623 -0.0445 20 6 6.7745 3.1054 -0.7499 21 7 2.0184 -0.6907 1.1961 22 6 2.1492 -0.0077 2.3757 23 1 1.8927 1.0403 2.4242 24 6 2.6115 -0.6622 3.5092 25 7 2.7377 -0.0056 4.6428 26 14 3.0559 -2.4746 3.4252 27 1 4.4887 -2.6166 3.0617 28 1 2.8158 -3.1050 4.7481 29 1 2.2162 -3.1431 2.3986 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6053 -0.2616 -2.1369 34 1 1.7516 -1.7714 -1.2057 35 1 5.1713 -1.3609 -2.5389 36 1 3.8000 -2.4818 -2.3598 37 1 3.6544 -1.0591 -3.4195 38 1 3.3284 1.4130 -1.9028 39 1 3.7877 3.1358 -2.3728 40 1 4.4206 5.4883 -2.6778 41 1 6.5143 6.3479 -1.7924 42 1 10.0266 4.5488 0.5959 43 1 9.5088 2.1740 0.9783 44 1 7.4077 1.2219 0.1160 45 1 2.2490 -1.6318 1.1525 46 1 3.0611 -0.4628 5.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135127708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:02 Heat of formation + Delta-G solvation = 33.224474 kcal Electronic energy + Delta-G solvation = -27941.481859 eV Core-core repulsion = 24217.380950 eV Total energy + Delta-G solvation = -3724.100910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09027 -39.49973 -37.21393 -36.86973 -34.72005 -33.31095 -32.29281 -31.34366 -30.61979 -29.65681 -29.18839 -26.47044 -24.79713 -23.68864 -23.42768 -23.22250 -21.17595 -20.57563 -19.90043 -18.41180 -17.73621 -17.46610 -16.85675 -16.12827 -16.05965 -15.06634 -14.91445 -14.83131 -14.44838 -14.28426 -14.03873 -13.81085 -13.63555 -13.26635 -13.08159 -12.84805 -12.68700 -12.43135 -12.21139 -12.15324 -12.01179 -11.78693 -11.73404 -11.44899 -11.26514 -10.92457 -10.68490 -10.55215 -10.47498 -10.31226 -10.09921 -9.98481 -9.55598 -9.18410 -8.93442 -8.89930 -8.89055 -8.33601 -7.24273 -5.73364 -3.08569 0.08423 0.74091 1.74588 2.60890 3.17388 3.33754 3.39539 3.43398 3.48505 4.09915 4.18253 4.51946 4.57974 4.62669 4.73359 4.81245 4.94566 5.01344 5.03521 5.20213 5.22629 5.25848 5.37193 5.48204 5.56310 5.67247 5.72037 5.75459 5.76135 5.83515 5.87162 5.95691 6.07883 6.11377 6.16035 6.19391 6.27924 6.30725 6.39387 6.43629 6.56076 6.66360 6.74661 6.80084 6.96336 7.60800 7.82359 8.01503 8.35518 8.45197 9.23674 9.96460 10.15353 11.45198 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.004115 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.559776 B = 6802.642213 C = 7775.729030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.707 5.707 9 C 0.564 3.436 10 O -0.528 6.528 11 C -0.102 4.102 12 C -0.079 4.079 13 C -0.111 4.111 14 C -0.070 4.070 15 C 0.119 3.881 16 N -0.482 5.482 17 C 0.133 3.867 18 C -0.181 4.181 19 C -0.055 4.055 20 C -0.066 4.066 21 N -0.745 5.745 22 C -0.239 4.239 23 H 0.087 0.913 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.396 0.604 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.138 0.862 44 H 0.180 0.820 45 H 0.360 0.640 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 6.361 -18.295 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.038 3.962 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.358 5.358 9 C 0.351 3.649 10 O -0.407 6.407 11 C -0.106 4.106 12 C -0.098 4.098 13 C -0.131 4.131 14 C -0.089 4.089 15 C -0.003 4.003 16 N -0.190 5.190 17 C -0.039 4.039 18 C -0.201 4.201 19 C -0.080 4.080 20 C -0.069 4.069 21 N -0.388 5.388 22 C -0.369 4.369 23 H 0.105 0.895 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.711 3.289 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.231 0.769 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.175 0.825 43 H 0.156 0.844 44 H 0.197 0.803 45 H 0.192 0.808 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.414 6.864 -17.930 20.242 hybrid contribution -0.272 -1.813 0.192 1.843 sum 6.143 5.051 -17.738 19.439 Atomic orbital electron populations 1.22424 0.98960 1.00858 1.00347 1.20200 0.91804 0.95813 0.85523 0.92788 1.22231 0.93628 1.02313 0.99218 1.21064 0.95208 0.80056 0.99831 0.88006 1.22197 1.01722 1.00078 0.98045 1.45873 1.16098 1.11745 1.62036 1.17995 0.82148 0.86867 0.77896 1.90566 1.50686 1.56064 1.43359 1.19954 0.95349 0.94075 1.01173 1.21399 0.98468 0.93446 0.96482 1.20790 0.96815 0.95300 1.00171 1.20961 0.92823 0.99745 0.95381 1.18846 0.92963 0.90742 0.97708 1.68037 1.03018 1.37607 1.10360 1.22990 0.97683 0.90573 0.92682 1.22063 0.98973 0.96823 1.02271 1.22729 0.91498 1.03123 0.90650 1.18641 0.94805 0.94327 0.99116 1.42768 1.79689 1.09213 1.07162 1.18998 1.36866 0.95319 0.85699 0.89484 1.24634 1.01385 0.97338 0.95580 1.69690 1.52711 1.35523 1.00290 0.86607 0.78639 0.86950 0.76695 1.20947 1.21873 1.20390 0.94355 0.93617 0.92406 0.91466 0.90559 0.92315 0.91687 0.92830 0.76921 0.85032 0.84616 0.84462 0.82454 0.84398 0.80305 0.80763 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.18 3.10 2.84 -67.93 -0.19 2.91 16 3 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 4 C -0.14 -1.82 4.29 -26.73 -0.11 -1.93 16 5 C 0.14 2.06 2.52 -67.93 -0.17 1.89 16 6 H 0.10 1.92 7.05 -51.93 -0.37 1.55 16 7 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 8 N -0.71 -9.58 4.40 -54.84 -0.24 -9.82 16 9 C 0.56 9.07 7.69 -12.46 -0.10 8.97 16 10 O -0.53 -10.17 13.07 5.29 0.07 -10.10 16 11 C -0.10 -1.46 5.90 -104.65 -0.62 -2.08 16 12 C -0.08 -0.85 9.52 -39.14 -0.37 -1.22 16 13 C -0.11 -1.06 9.92 -40.04 -0.40 -1.46 16 14 C -0.07 -0.80 9.96 -39.38 -0.39 -1.19 16 15 C 0.12 1.70 6.60 -84.87 -0.56 1.14 16 16 N -0.48 -6.78 10.34 -10.99 -0.11 -6.89 16 17 C 0.13 1.61 11.15 -17.47 -0.19 1.42 16 18 C -0.18 -2.31 10.03 -39.74 -0.40 -2.71 16 19 C -0.05 -0.85 9.29 -39.31 -0.37 -1.22 16 20 C -0.07 -1.02 5.76 -106.53 -0.61 -1.63 16 21 N -0.75 -16.98 4.30 -53.42 -0.23 -17.21 16 22 C -0.24 -6.68 10.41 -15.06 -0.16 -6.84 16 23 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 26 Si 0.88 22.49 27.74 -169.99 -4.71 17.78 16 27 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.40 4.14 6.67 -40.82 -0.27 3.87 16 39 H 0.13 1.01 6.42 -52.49 -0.34 0.67 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 42 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.18 3.07 4.96 -52.50 -0.26 2.81 16 45 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 46 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -35.33 376.96 -9.33 -44.66 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -6.52 Total: 12.71 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.03 Total: -7.82 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.19 Total: -62.91 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.33 -9.33 -44.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135127708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.888 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds