Wall clock time and date at job start Tue Mar 31 2020 15:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47419 * 2 1 4 4 C 1.53001 * 109.46899 * 240.00446 * 2 1 3 5 5 C 1.53000 * 109.47213 * 175.00002 * 4 2 1 6 6 H 1.09003 * 109.47256 * 54.99462 * 5 4 2 7 7 C 1.52995 * 109.47205 * 175.00013 * 5 4 2 8 8 N 1.46509 * 109.46996 * 295.00194 * 5 4 2 9 9 C 1.34777 * 119.99924 * 155.00318 * 8 5 4 10 10 O 1.21587 * 120.00146 * 359.97438 * 9 8 5 11 11 C 1.47550 * 119.99779 * 179.72577 * 9 8 5 12 12 C 1.38701 * 120.38710 * 354.34729 * 11 9 8 13 13 C 1.38967 * 120.53905 * 179.70208 * 12 11 9 14 14 C 1.36205 * 121.23645 * 0.58317 * 13 12 11 15 15 C 1.40719 * 120.19938 * 359.72268 * 14 13 12 16 16 N 1.33685 * 120.93406 * 180.02562 * 15 14 13 17 17 C 1.31067 * 121.33843 * 180.02562 * 16 15 14 18 18 C 1.39339 * 121.70517 * 359.96043 * 17 16 15 19 19 C 1.36671 * 119.87318 * 0.02562 * 18 17 16 20 20 C 1.40469 * 118.16861 * 0.02562 * 19 18 17 21 21 N 1.46501 * 109.47566 * 120.00602 * 2 1 3 22 22 C 1.36935 * 119.99765 * 275.00099 * 21 2 1 23 23 H 1.08004 * 120.00308 * 359.97438 * 22 21 2 24 24 C 1.38817 * 120.00285 * 179.97438 * 22 21 2 25 25 N 1.31608 * 120.00380 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99664 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47072 * 89.99618 * 26 24 22 28 28 H 1.48501 * 109.47198 * 210.00200 * 26 24 22 29 29 H 1.48508 * 109.46974 * 329.99910 * 26 24 22 30 30 H 1.08998 * 109.47612 * 59.99222 * 1 2 3 31 31 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47040 * 299.99404 * 1 2 3 33 33 H 1.08995 * 109.47049 * 54.99988 * 4 2 1 34 34 H 1.08997 * 109.47208 * 294.99882 * 4 2 1 35 35 H 1.09007 * 109.46989 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47434 * 299.99616 * 7 5 4 37 37 H 1.08997 * 109.47503 * 60.00052 * 7 5 4 38 38 H 0.96999 * 119.99920 * 334.99201 * 8 5 4 39 39 H 1.07999 * 119.72639 * 0.02562 * 12 11 9 40 40 H 1.08000 * 119.38102 * 180.26027 * 13 12 11 41 41 H 1.08004 * 119.90357 * 179.69781 * 14 13 12 42 42 H 1.08003 * 119.14512 * 179.97438 * 17 16 15 43 43 H 1.07998 * 120.06200 * 179.97438 * 18 17 16 44 44 H 1.08003 * 120.91875 * 180.02562 * 19 18 17 45 45 H 0.96993 * 120.00257 * 94.98961 * 21 2 1 46 46 H 0.96996 * 120.00504 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3870 7 6 4.0850 -1.4381 -2.4927 8 7 3.9479 0.7895 -1.4925 9 6 5.1612 1.2136 -1.0868 10 8 5.9376 0.4321 -0.5722 11 6 5.5493 2.6250 -1.2722 12 6 4.7216 3.4949 -1.9665 13 6 5.0812 4.8263 -2.1377 14 6 6.2541 5.3104 -1.6426 15 6 7.1281 4.4628 -0.9370 16 7 8.2827 4.9226 -0.4444 17 6 9.1028 4.1401 0.2136 18 6 8.8136 2.7948 0.4329 19 6 7.6490 2.2623 -0.0445 20 6 6.7745 3.1054 -0.7499 21 7 2.0184 -0.6907 1.1961 22 6 2.1492 -0.0077 2.3757 23 1 1.8927 1.0403 2.4242 24 6 2.6115 -0.6622 3.5092 25 7 2.7377 -0.0056 4.6428 26 14 3.0559 -2.4746 3.4252 27 1 4.4887 -2.6166 3.0617 28 1 2.8158 -3.1050 4.7481 29 1 2.2162 -3.1431 2.3986 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6053 -0.2616 -2.1369 34 1 1.7516 -1.7714 -1.2057 35 1 5.1713 -1.3609 -2.5389 36 1 3.8000 -2.4818 -2.3598 37 1 3.6544 -1.0591 -3.4195 38 1 3.3284 1.4130 -1.9028 39 1 3.7877 3.1358 -2.3728 40 1 4.4206 5.4883 -2.6778 41 1 6.5143 6.3479 -1.7924 42 1 10.0266 4.5488 0.5959 43 1 9.5088 2.1740 0.9783 44 1 7.4077 1.2219 0.1160 45 1 2.2490 -1.6318 1.1525 46 1 3.0611 -0.4628 5.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135127708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:01 Heat of formation + Delta-G solvation = 8.970538 kcal Electronic energy + Delta-G solvation = -27942.533589 eV Core-core repulsion = 24217.380950 eV Total energy + Delta-G solvation = -3725.152639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10284 -40.64215 -38.50366 -37.90597 -36.22811 -34.34013 -34.14269 -32.65852 -31.55835 -31.14313 -30.47617 -27.61445 -25.79865 -25.34668 -24.64307 -24.37833 -22.34679 -21.75801 -21.36019 -19.77181 -19.30228 -18.56031 -17.86878 -17.26980 -17.16227 -16.68597 -16.19578 -15.96872 -15.76877 -15.47346 -15.26345 -15.15054 -14.78880 -14.59774 -14.34125 -14.14484 -14.01991 -13.93031 -13.43850 -13.27611 -13.05445 -12.98624 -12.82720 -12.72516 -12.63867 -12.34503 -12.29676 -12.01830 -11.89261 -11.70578 -11.52623 -11.44383 -11.24494 -10.97996 -10.29744 -10.09947 -9.83274 -9.31796 -9.27438 -8.02353 -5.32387 -0.89509 -0.21092 0.67089 1.31316 1.37734 1.42270 1.66573 2.08450 2.24599 2.46930 3.09454 3.29861 3.31027 3.53799 3.64869 3.73465 3.80266 3.82781 3.88007 4.04243 4.08287 4.15514 4.34414 4.40417 4.44606 4.51726 4.65635 4.76853 4.77415 4.78228 4.82668 4.88959 4.99921 5.02619 5.08565 5.12216 5.21682 5.23513 5.31870 5.32936 5.38829 5.54389 5.61133 5.63365 5.78483 5.79461 6.22515 6.53605 6.81953 7.10622 7.23997 7.89559 8.04849 9.19986 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.004115 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.559776 B = 6802.642213 C = 7775.729030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.043 0.957 4 C -0.121 4.121 5 C 0.141 3.859 6 H 0.051 0.949 7 C -0.152 4.152 8 N -0.695 5.695 9 C 0.554 3.446 10 O -0.574 6.574 11 C -0.139 4.139 12 C -0.059 4.059 13 C -0.101 4.101 14 C -0.073 4.073 15 C 0.094 3.906 16 N -0.494 5.494 17 C 0.128 3.872 18 C -0.177 4.177 19 C -0.093 4.093 20 C -0.089 4.089 21 N -0.749 5.749 22 C -0.212 4.212 23 H 0.052 0.948 24 C -0.068 4.068 25 N -0.988 5.988 26 Si 0.947 3.053 27 H -0.292 1.292 28 H -0.297 1.297 29 H -0.245 1.245 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.160 0.840 42 H 0.196 0.804 43 H 0.160 0.840 44 H 0.154 0.846 45 H 0.362 0.638 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 6.873 -21.975 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.061 0.939 4 C -0.159 4.159 5 C 0.036 3.964 6 H 0.069 0.931 7 C -0.210 4.210 8 N -0.346 5.346 9 C 0.343 3.657 10 O -0.456 6.456 11 C -0.143 4.143 12 C -0.077 4.077 13 C -0.120 4.120 14 C -0.092 4.092 15 C -0.027 4.027 16 N -0.202 5.202 17 C -0.044 4.044 18 C -0.196 4.196 19 C -0.118 4.118 20 C -0.092 4.092 21 N -0.392 5.392 22 C -0.344 4.344 23 H 0.070 0.930 24 C -0.259 4.259 25 N -0.639 5.639 26 Si 0.775 3.225 27 H -0.219 1.219 28 H -0.224 1.224 29 H -0.169 1.169 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.185 0.815 40 H 0.200 0.800 41 H 0.177 0.823 42 H 0.213 0.787 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.195 0.805 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.767 7.382 -21.704 23.415 hybrid contribution 0.189 -1.808 1.252 2.207 sum 4.956 5.574 -20.452 21.769 Atomic orbital electron populations 1.22286 0.97180 1.01374 1.00851 1.20533 0.92898 0.95411 0.85356 0.93923 1.22156 0.92391 1.02901 0.98452 1.20991 0.95933 0.80651 0.98792 0.93111 1.22098 1.00421 1.00410 0.98077 1.45762 1.15589 1.11914 1.61372 1.18432 0.82393 0.87561 0.77334 1.90551 1.52150 1.57428 1.45476 1.19966 0.96459 0.93798 1.04119 1.21881 0.98542 0.93471 0.93835 1.21302 0.96524 0.95155 0.99036 1.21359 0.92877 1.00447 0.94468 1.19275 0.93858 0.90767 0.98821 1.68093 1.03313 1.38030 1.10763 1.23561 0.98644 0.90083 0.92090 1.22352 0.98255 0.97667 1.01366 1.22653 0.93509 1.02486 0.93148 1.18886 0.95490 0.95094 0.99695 1.42825 1.79911 1.09311 1.07190 1.18952 1.33937 0.94007 0.87495 0.92969 1.25417 1.02906 1.02116 0.95425 1.69873 1.55380 1.37502 1.01191 0.85518 0.78109 0.81715 0.77127 1.21869 1.22413 1.16872 0.90047 0.93070 0.95712 0.86754 0.89398 0.94444 0.90580 0.89760 0.74941 0.81530 0.79994 0.82259 0.78729 0.82256 0.82930 0.80535 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.49 71.98 0.68 -3.98 16 2 C 0.17 5.50 2.84 44.99 0.13 5.63 16 3 H 0.04 1.52 7.56 -2.39 -0.02 1.50 16 4 C -0.12 -2.80 4.29 30.59 0.13 -2.67 16 5 C 0.14 3.89 2.52 44.99 0.11 4.00 16 6 H 0.05 1.96 7.05 -2.39 -0.02 1.94 16 7 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 8 N -0.69 -18.14 4.40 -445.67 -1.96 -20.10 16 9 C 0.55 18.54 7.69 86.70 0.67 19.20 16 10 O -0.57 -24.06 13.07 -3.99 -0.05 -24.11 16 11 C -0.14 -4.07 5.90 -19.89 -0.12 -4.19 16 12 C -0.06 -1.12 9.52 22.56 0.21 -0.90 16 13 C -0.10 -1.58 9.92 21.97 0.22 -1.36 16 14 C -0.07 -1.51 9.96 22.40 0.22 -1.28 16 15 C 0.09 2.68 6.60 40.28 0.27 2.94 16 16 N -0.49 -13.77 10.34 -188.67 -1.95 -15.72 16 17 C 0.13 3.10 11.15 85.07 0.95 4.04 16 18 C -0.18 -4.75 10.03 22.17 0.22 -4.53 16 19 C -0.09 -3.14 9.29 22.45 0.21 -2.93 16 20 C -0.09 -2.88 5.76 -21.10 -0.12 -3.00 16 21 N -0.75 -33.94 4.30 -322.94 -1.39 -35.33 16 22 C -0.21 -12.25 10.41 84.04 0.87 -11.37 16 23 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 25 N -0.99 -65.85 13.97 21.65 0.30 -65.55 16 26 Si 0.95 47.79 27.74 68.60 1.90 49.69 16 27 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 28 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 29 H -0.24 -10.84 6.52 99.48 0.65 -10.19 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.41 7.43 6.67 -92.71 -0.62 6.82 16 39 H 0.17 1.84 6.42 -2.91 -0.02 1.82 16 40 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 44 H 0.15 5.97 4.96 -3.21 -0.02 5.95 16 45 H 0.36 16.07 5.66 -92.71 -0.52 15.54 16 46 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -85.63 376.96 2.47 -83.16 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.19 Total: 34.67 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.81 Total: -6.71 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -5.00 Total: -136.70 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.90 Total: 49.69 kcal Total: -85.63 2.47 -83.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135127708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.132 kcal (2) G-P(sol) polarization free energy of solvation -85.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds