Wall clock time and date at job start Tue Mar 31 2020 15:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.47305 * 2 1 4 4 C 1.46902 * 110.99846 * 163.02760 * 3 2 1 5 5 C 1.50700 * 109.47111 * 190.00345 * 4 3 2 6 6 C 1.38374 * 119.84610 * 270.32167 * 5 4 3 7 7 C 1.37939 * 120.15001 * 180.28031 * 6 5 4 8 8 C 1.39647 * 119.84614 * 359.41869 * 7 6 5 9 9 C 1.47722 * 120.15014 * 180.29700 * 8 7 6 10 10 O 1.21594 * 120.00055 * 320.06554 * 9 8 7 11 11 N 1.34775 * 119.99741 * 140.05759 * 9 8 7 12 12 C 1.36874 * 119.99912 * 1.89246 * 11 9 8 13 13 H 1.07997 * 120.00156 * 307.89231 * 12 11 9 14 14 C 1.39049 * 119.99561 * 127.89860 * 12 11 9 15 15 N 1.31367 * 119.99790 * 172.63608 * 14 12 11 16 16 Si 1.86801 * 120.00372 * 352.63196 * 14 12 11 17 17 H 1.48505 * 109.47090 * 92.61434 * 16 14 12 18 18 H 1.48494 * 109.47358 * 212.61523 * 16 14 12 19 19 H 1.48501 * 109.47131 * 332.61874 * 16 14 12 20 20 C 1.46501 * 119.99881 * 181.89165 * 11 9 8 21 21 C 1.47200 * 109.47240 * 90.85388 * 20 11 9 22 22 N 9.30217 * 132.75972 * 183.55684 * 3 1 2 23 23 C 1.39648 * 119.69827 * 0.28104 * 8 7 6 24 24 C 1.37935 * 119.84303 * 359.97438 * 23 8 7 25 25 C 1.46895 * 111.00127 * 286.98008 * 3 2 1 26 26 C 1.53004 * 117.49736 * 141.25234 * 25 3 2 27 27 C 1.53001 * 60.00032 * 252.50960 * 26 25 3 28 28 H 1.09000 * 109.46904 * 69.93604 * 1 2 3 29 29 H 1.08996 * 109.47483 * 189.93887 * 1 2 3 30 30 H 1.09001 * 109.46481 * 309.94177 * 1 2 3 31 31 H 1.09001 * 109.46495 * 240.00165 * 2 1 3 32 32 H 1.08995 * 109.47057 * 120.00438 * 2 1 3 33 33 H 1.08994 * 109.46966 * 70.00198 * 4 3 2 34 34 H 1.08998 * 109.46880 * 310.00238 * 4 3 2 35 35 H 1.08003 * 119.92677 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.07373 * 179.69784 * 7 6 5 37 37 H 0.97000 * 119.99541 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46959 * 210.85291 * 20 11 9 39 39 H 1.08998 * 109.47479 * 330.85050 * 20 11 9 40 40 H 1.07998 * 120.07723 * 180.02562 * 23 8 7 41 41 H 1.08003 * 119.92025 * 180.02562 * 24 23 8 42 42 H 1.08997 * 115.54972 * 286.96181 * 25 3 2 43 43 H 1.09002 * 117.49938 * 0.02562 * 26 25 3 44 44 H 1.08995 * 117.49574 * 145.02301 * 26 25 3 45 45 H 1.08999 * 117.49922 * 252.50696 * 27 26 25 46 46 H 1.09000 * 117.51602 * 107.48334 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4319 1.4440 0.4003 5 6 3.8302 2.8796 0.6269 6 6 4.3288 3.6300 -0.4234 7 6 4.7007 4.9429 -0.2217 8 6 4.5617 5.5181 1.0432 9 6 4.9518 6.9255 1.2652 10 8 5.9553 7.3683 0.7404 11 7 4.1952 7.7187 2.0492 12 6 3.0870 7.2100 2.6709 13 1 2.3415 6.6798 2.0970 14 6 2.9210 7.3760 4.0415 15 7 1.7947 7.0177 4.6148 16 14 4.2996 8.1084 5.0674 17 1 4.1107 9.5776 5.1738 18 1 4.2795 7.5072 6.4250 19 1 5.6047 7.8230 4.4188 20 6 4.5591 9.1255 2.2361 21 6 3.8898 9.9455 1.2132 22 7 3.3733 10.5784 0.4237 23 6 4.0520 4.7569 2.0972 24 6 3.6890 3.4436 1.8826 25 6 1.8177 2.0148 -1.3116 26 6 1.3884 3.4833 -1.3315 27 6 0.3865 2.3883 -1.7030 28 1 -0.3633 0.3526 -0.9653 29 1 -0.3634 -1.0122 0.1774 30 1 -0.3632 0.6598 0.7879 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.0511 1.0151 -0.3875 34 1 3.5724 0.8783 1.3214 35 1 4.4316 3.1852 -1.4022 36 1 5.0943 5.5259 -1.0412 37 1 1.6791 7.1332 5.5710 38 1 4.2452 9.4534 3.2271 39 1 5.6392 9.2371 2.1417 40 1 3.9415 5.1957 3.0778 41 1 3.2942 2.8539 2.6968 42 1 2.4835 1.6740 -2.1044 43 1 1.2564 3.9821 -0.3713 44 1 1.7720 4.1088 -2.1374 45 1 0.1109 2.2936 -2.7533 46 1 -0.4052 2.1663 -0.9874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337544607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:11 Heat of formation + Delta-G solvation = 69.406595 kcal Electronic energy + Delta-G solvation = -27972.645373 eV Core-core repulsion = 24250.113438 eV Total energy + Delta-G solvation = -3722.531935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.80247 -38.97460 -37.52120 -36.02245 -34.88942 -34.48783 -32.25421 -32.15860 -30.39918 -29.75091 -27.85409 -25.60970 -24.68191 -22.87473 -22.31818 -21.86440 -21.52407 -20.19985 -19.44785 -18.60162 -17.20042 -16.16795 -16.03441 -15.68747 -15.48590 -15.30523 -15.01940 -14.54473 -14.46820 -13.88658 -13.70106 -13.48147 -13.31539 -13.04536 -12.91815 -12.81909 -12.57956 -12.33729 -12.33659 -12.17555 -11.82354 -11.70559 -11.52619 -11.43385 -11.31495 -11.14361 -11.08110 -10.88275 -10.49909 -10.39348 -10.19375 -10.11448 -9.98345 -9.44872 -8.91766 -8.42161 -8.33596 -8.08499 -8.04293 -6.59754 -4.42545 1.56196 2.03575 2.90218 3.07945 3.08586 3.12570 3.38201 3.47392 3.84507 3.88840 3.94880 4.29646 4.51373 4.61304 4.86228 4.89827 5.01804 5.04974 5.06331 5.12099 5.22992 5.38410 5.45526 5.49284 5.55873 5.62398 5.64135 5.69463 5.72733 5.73594 5.82142 5.92567 5.94874 6.05532 6.16241 6.19203 6.23817 6.40844 6.46010 6.64207 6.88394 7.01803 7.10150 7.12850 7.16386 7.19748 7.54267 7.82158 8.11015 8.14177 8.72032 9.01547 9.35171 10.47654 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.003774 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.698632 B = 7417.841384 C = 7920.206745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 N -0.505 5.505 4 C 0.101 3.899 5 C -0.068 4.068 6 C -0.124 4.124 7 C -0.080 4.080 8 C -0.099 4.099 9 C 0.541 3.459 10 O -0.580 6.580 11 N -0.461 5.461 12 C -0.348 4.348 13 H 0.108 0.892 14 C 0.072 3.928 15 N -0.853 5.853 16 Si 0.862 3.138 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.252 1.252 20 C 0.186 3.814 21 C 0.217 3.783 22 N -0.451 5.451 23 C -0.047 4.047 24 C -0.117 4.117 25 C 0.006 3.994 26 C -0.150 4.150 27 C -0.178 4.178 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.279 0.721 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -13.243 -4.755 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.072 4.072 3 N -0.230 5.230 4 C -0.026 4.026 5 C -0.069 4.069 6 C -0.143 4.143 7 C -0.099 4.099 8 C -0.102 4.102 9 C 0.332 3.668 10 O -0.463 6.463 11 N -0.184 5.184 12 C -0.475 4.475 13 H 0.125 0.875 14 C -0.137 4.137 15 N -0.486 5.486 16 Si 0.687 3.313 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.176 1.176 20 C 0.060 3.940 21 C -0.102 4.102 22 N -0.130 5.130 23 C -0.065 4.065 24 C -0.136 4.136 25 C -0.102 4.102 26 C -0.187 4.187 27 C -0.215 4.215 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.168 0.832 41 H 0.137 0.863 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.176 -11.853 -5.635 13.126 hybrid contribution 0.957 -0.229 0.421 1.070 sum 1.133 -12.082 -5.214 13.208 Atomic orbital electron populations 1.21969 0.94982 1.01282 1.02831 1.22015 0.96350 0.88514 1.00309 1.61838 1.18075 1.16842 1.26218 1.21006 0.87471 0.93975 1.00159 1.19644 0.98494 0.94825 0.93888 1.20644 1.01728 0.94072 0.97853 1.21015 0.98157 0.94719 0.96046 1.19686 1.02238 0.93637 0.94608 1.18604 0.82328 0.85781 0.80060 1.90670 1.26748 1.76101 1.52752 1.43457 1.25817 1.04176 1.44907 1.19058 0.99278 1.38057 0.91128 0.87506 1.25515 0.96093 0.95358 0.96732 1.69628 1.23301 1.43412 1.12267 0.87072 0.83755 0.79735 0.80692 1.19315 1.20526 1.17584 1.19337 0.99319 0.82240 0.93110 1.29907 0.92962 0.93184 0.94183 1.81019 1.10154 1.10792 1.11007 1.21823 0.91768 0.92363 1.00594 1.20917 1.00911 0.95344 0.96403 1.22268 0.98104 0.98933 0.90912 1.23004 1.01639 0.90568 1.03531 1.23177 0.92718 1.04288 1.01329 0.92037 0.92847 0.91616 0.95068 0.91060 0.94374 0.90035 0.87136 0.86347 0.91050 0.87728 0.86596 0.83167 0.86307 0.90272 0.87704 0.89155 0.89317 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.83 37.16 0.33 -1.08 16 2 C 0.06 0.54 5.70 -3.82 -0.02 0.52 16 3 N -0.51 -6.02 4.58 -228.09 -1.05 -7.06 16 4 C 0.10 1.19 5.10 -4.98 -0.03 1.17 16 5 C -0.07 -0.98 4.70 -104.52 -0.49 -1.47 16 6 C -0.12 -1.84 7.72 -39.64 -0.31 -2.15 16 7 C -0.08 -1.40 9.64 -39.17 -0.38 -1.78 16 8 C -0.10 -1.96 5.36 -104.97 -0.56 -2.52 16 9 C 0.54 11.95 7.31 -12.39 -0.09 11.86 16 10 O -0.58 -13.64 16.48 5.28 0.09 -13.56 16 11 N -0.46 -10.14 1.93 -119.06 -0.23 -10.37 16 12 C -0.35 -8.13 6.50 -15.00 -0.10 -8.23 16 13 H 0.11 2.77 7.58 -52.49 -0.40 2.37 16 14 C 0.07 1.69 5.02 -17.45 -0.09 1.60 16 15 N -0.85 -21.32 13.95 55.50 0.77 -20.55 16 16 Si 0.86 17.52 24.90 -169.99 -4.23 13.29 16 17 H -0.27 -5.19 6.85 56.52 0.39 -4.80 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 19 H -0.25 -5.04 7.06 56.52 0.40 -4.64 16 20 C 0.19 3.68 4.60 -6.83 -0.03 3.64 16 21 C 0.22 4.52 15.76 -20.76 -0.33 4.20 16 22 N -0.45 -9.96 18.54 42.15 0.78 -9.18 16 23 C -0.05 -0.89 8.14 -39.17 -0.32 -1.21 16 24 C -0.12 -1.91 9.68 -39.64 -0.38 -2.29 16 25 C 0.01 0.08 3.96 -67.71 -0.27 -0.19 16 26 C -0.15 -1.97 8.69 -26.73 -0.23 -2.20 16 27 C -0.18 -1.96 8.63 -26.73 -0.23 -2.19 16 28 H 0.06 0.56 5.63 -51.93 -0.29 0.27 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.29 8.04 -51.93 -0.42 -0.13 16 32 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 33 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 35 H 0.11 1.41 8.01 -52.48 -0.42 0.99 16 36 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 38 H 0.11 1.99 4.07 -51.93 -0.21 1.78 16 39 H 0.12 2.08 7.37 -51.93 -0.38 1.70 16 40 H 0.15 3.09 5.92 -52.49 -0.31 2.78 16 41 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.16 6.27 -51.93 -0.33 0.84 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -27.02 376.57 -8.24 -35.25 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.52 Total: 8.82 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -3.53 Total: -2.32 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.28 Total: -47.16 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -4.23 Total: 13.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.02 -8.24 -35.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337544607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.660 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds