Wall clock time and date at job start Tue Mar 31 2020 15:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36560 * 125.07142 * 2 1 4 4 C 1.34453 * 109.97742 * 179.97438 * 3 2 1 5 5 C 1.46255 * 107.03405 * 0.02562 * 4 3 2 6 6 C 1.39914 * 133.83754 * 179.97438 * 5 4 3 7 7 C 1.36206 * 119.95546 * 179.76100 * 6 5 4 8 8 C 1.40237 * 120.38097 * 0.51565 * 7 6 5 9 9 C 1.47578 * 119.83265 * 179.75939 * 8 7 6 10 10 O 1.21587 * 119.99859 * 179.72661 * 9 8 7 11 11 N 1.34774 * 119.99896 * 359.71962 * 9 8 7 12 12 C 1.46497 * 119.99932 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47203 * 180.02562 * 12 11 9 14 14 H 1.09008 * 112.84868 * 316.19908 * 13 12 11 15 15 C 1.53775 * 113.69017 * 87.47048 * 13 12 11 16 16 C 1.53779 * 87.08438 * 139.99386 * 15 13 12 17 17 H 1.09002 * 113.61731 * 89.11293 * 16 15 13 18 18 N 1.46500 * 113.68825 * 220.00754 * 16 15 13 19 19 C 1.36940 * 119.99935 * 254.05682 * 18 16 15 20 20 H 1.08002 * 119.99799 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99860 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99529 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00218 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47321 * 89.99965 * 23 21 19 25 25 H 1.48501 * 109.47334 * 210.00202 * 23 21 19 26 26 H 1.48504 * 109.46914 * 329.99630 * 23 21 19 27 27 C 1.53777 * 113.61649 * 185.00515 * 13 12 11 28 28 C 1.39285 * 120.33389 * 359.47679 * 8 7 6 29 29 C 1.37819 * 125.06673 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47068 * 270.00120 * 1 2 3 31 31 H 1.09006 * 109.47213 * 29.99698 * 1 2 3 32 32 H 1.09001 * 109.47681 * 150.00160 * 1 2 3 33 33 H 1.08008 * 125.00965 * 359.97438 * 3 2 1 34 34 H 1.08001 * 126.48161 * 179.97438 * 4 3 2 35 35 H 1.07994 * 120.01767 * 0.02562 * 6 5 4 36 36 H 1.08000 * 119.80650 * 180.24667 * 7 6 5 37 37 H 0.97004 * 120.00158 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46697 * 60.00384 * 12 11 9 39 39 H 1.08997 * 109.47634 * 300.00373 * 12 11 9 40 40 H 1.08993 * 113.61636 * 25.43750 * 15 13 12 41 41 H 1.09008 * 113.61006 * 254.53993 * 15 13 12 42 42 H 0.96998 * 119.99853 * 74.06469 * 18 16 15 43 43 H 0.97009 * 119.99277 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.61941 * 105.38293 * 27 13 12 45 45 H 1.09005 * 113.61136 * 334.48457 * 27 13 12 46 46 H 1.07999 * 120.16578 * 180.27554 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1177 0.0000 4 6 3.5478 0.7675 0.0006 5 6 3.5973 -0.6942 0.0003 6 6 4.6387 -1.6285 0.0002 7 6 4.3569 -2.9611 0.0049 8 6 3.0266 -3.4047 -0.0010 9 6 2.7351 -4.8514 -0.0012 10 8 1.5828 -5.2393 -0.0013 11 7 3.7462 -5.7425 -0.0014 12 6 3.4568 -7.1786 -0.0010 13 6 4.7701 -7.9635 -0.0007 14 1 5.5055 -7.5585 -0.6961 15 6 5.3323 -8.2267 1.4062 16 6 5.7117 -9.6307 0.9065 17 1 6.7044 -9.6815 0.4592 18 7 5.4766 -10.6895 1.8913 19 6 6.5341 -11.2642 2.5444 20 1 7.5415 -10.9366 2.3337 21 6 6.3114 -12.2678 3.4771 22 7 7.3278 -12.8198 4.1052 23 14 4.5691 -12.8349 3.8409 24 1 4.2095 -13.9478 2.9259 25 1 4.4846 -13.3035 5.2475 26 1 3.6281 -11.7040 3.6387 27 6 4.5789 -9.4844 -0.1232 28 6 1.9790 -2.4868 -0.0008 29 6 2.2568 -1.1280 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.8817 2.1331 -0.0004 34 1 4.3939 1.4387 0.0003 35 1 5.6653 -1.2933 0.0007 36 1 5.1627 -3.6802 0.0089 37 1 4.6655 -5.4330 -0.0010 38 1 2.8811 -7.4334 -0.8908 39 1 2.8816 -7.4332 0.8892 40 1 4.5713 -8.2318 2.1866 41 1 6.1921 -7.6051 1.6562 42 1 4.5718 -10.9835 2.0806 43 1 7.1721 -13.5214 4.7568 44 1 4.8303 -9.8783 -1.1079 45 1 3.6118 -9.8334 0.2390 46 1 0.9554 -2.8314 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086245607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:23 Heat of formation + Delta-G solvation = 62.602395 kcal Electronic energy + Delta-G solvation = -26015.665576 eV Core-core repulsion = 22292.838589 eV Total energy + Delta-G solvation = -3722.826987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71543 -39.94039 -38.62318 -36.98017 -34.80948 -33.36181 -33.23361 -30.87875 -30.68577 -29.79278 -27.38876 -26.68108 -25.19295 -24.09382 -23.10990 -22.53664 -20.97041 -20.87554 -20.29329 -19.27573 -17.92227 -17.41124 -17.15100 -16.56072 -15.97099 -15.81697 -15.43534 -15.12302 -14.63768 -14.56800 -14.35665 -14.10403 -13.85099 -13.57989 -13.48823 -13.35313 -13.08334 -12.83433 -12.66290 -12.27715 -12.15351 -11.96412 -11.66712 -11.58649 -11.49486 -11.30665 -10.88728 -10.47610 -10.36624 -10.14882 -10.03583 -9.93379 -9.78653 -9.53856 -9.09289 -8.88849 -8.56768 -8.03073 -7.26039 -5.77820 -3.13153 0.48890 1.15483 2.19799 2.34329 2.86911 3.12258 3.38466 3.41654 3.46184 3.70980 4.25128 4.30451 4.37175 4.54865 4.58962 4.69003 4.76450 4.86419 4.89524 4.94803 4.97975 5.11031 5.12793 5.22758 5.30362 5.40411 5.43892 5.53153 5.65388 5.67219 5.74547 5.81928 5.86470 6.02272 6.15688 6.18551 6.20322 6.24839 6.31413 6.35785 6.42025 6.52155 6.70010 6.78210 6.83790 6.99779 7.44606 7.98814 8.14325 8.42081 9.20054 9.92887 10.12735 11.40389 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.001922 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.179800 B =14563.524684 C =14858.206283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.485 5.485 3 C 0.058 3.942 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.077 4.077 7 C -0.114 4.114 8 C -0.117 4.117 9 C 0.558 3.442 10 O -0.545 6.545 11 N -0.719 5.719 12 C 0.132 3.868 13 C -0.127 4.127 14 H 0.091 0.909 15 C -0.161 4.161 16 C 0.171 3.829 17 H 0.083 0.917 18 N -0.738 5.738 19 C -0.247 4.247 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.145 4.145 28 C -0.059 4.059 29 C 0.081 3.919 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.170 0.830 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.935 30.808 -12.118 34.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.168 5.168 3 C -0.068 4.068 4 C -0.234 4.234 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.134 4.134 8 C -0.121 4.121 9 C 0.346 3.654 10 O -0.424 6.424 11 N -0.370 5.370 12 C 0.009 3.991 13 C -0.146 4.146 14 H 0.110 0.890 15 C -0.202 4.202 16 C 0.060 3.940 17 H 0.101 0.899 18 N -0.377 5.377 19 C -0.377 4.377 20 H 0.109 0.891 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.184 4.184 28 C -0.081 4.081 29 C -0.024 4.024 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.167 0.833 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.880 30.404 -12.008 34.781 hybrid contribution -0.854 -0.203 0.440 0.982 sum -12.734 30.200 -11.568 34.757 Atomic orbital electron populations 1.22008 0.76855 1.04451 1.03325 1.43824 1.06092 1.04245 1.62606 1.21889 0.90562 0.91143 1.03179 1.21728 0.96057 0.92779 1.12873 1.19401 0.92015 0.93771 1.04081 1.20183 0.98204 0.91611 0.99593 1.20741 0.95078 0.95956 1.01609 1.19518 0.93525 0.92528 1.06572 1.18148 0.85134 0.85742 0.76399 1.90768 1.20514 1.80776 1.50315 1.45942 1.09357 1.06923 1.74780 1.21449 0.97369 0.78100 1.02191 1.22645 0.96057 0.96002 0.99939 0.89033 1.23917 1.00561 1.01054 0.94646 1.21509 0.96290 0.87067 0.89132 0.89854 1.42761 1.05701 1.42640 1.46612 1.19136 0.88488 1.14027 1.16075 0.89135 1.24697 0.96726 0.98773 0.98982 1.69708 1.28995 1.29243 1.30110 0.86553 0.85723 0.78700 0.77582 1.21036 1.21726 1.20277 1.23447 1.01035 0.93344 1.00590 1.20040 0.99742 0.88479 0.99791 1.18092 0.90304 0.88081 1.05950 0.91007 0.89718 0.89834 0.81273 0.83295 0.85284 0.85445 0.76346 0.91576 0.91209 0.90424 0.92258 0.80453 0.93055 0.91584 0.90320 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 11.02 59.85 0.66 0.99 16 2 N -0.48 -3.74 3.18 -121.84 -0.39 -4.13 16 3 C 0.06 0.37 11.28 -16.78 -0.19 0.18 16 4 C -0.21 -1.59 11.08 -37.70 -0.42 -2.01 16 5 C -0.09 -0.86 6.37 -105.04 -0.67 -1.53 16 6 C -0.08 -0.69 10.03 -39.69 -0.40 -1.09 16 7 C -0.11 -1.07 9.46 -39.56 -0.37 -1.44 16 8 C -0.12 -1.35 5.87 -104.95 -0.62 -1.96 16 9 C 0.56 7.51 7.76 -12.45 -0.10 7.42 16 10 O -0.54 -9.20 16.31 5.29 0.09 -9.12 16 11 N -0.72 -8.31 5.50 -61.34 -0.34 -8.65 16 12 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 13 C -0.13 -1.60 3.75 -89.81 -0.34 -1.94 16 14 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 15 C -0.16 -2.53 7.43 -25.92 -0.19 -2.72 16 16 C 0.17 3.15 4.47 -67.12 -0.30 2.85 16 17 H 0.08 1.55 8.11 -51.93 -0.42 1.12 16 18 N -0.74 -17.29 5.21 -52.64 -0.27 -17.57 16 19 C -0.25 -6.95 10.45 -15.06 -0.16 -7.10 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 23 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 27 C -0.14 -2.13 7.39 -25.92 -0.19 -2.32 16 28 C -0.06 -0.67 9.48 -39.03 -0.37 -1.04 16 29 C 0.08 0.83 6.80 -84.00 -0.57 0.26 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.90 6.36 -52.49 -0.33 0.56 16 37 H 0.40 3.63 6.46 -40.82 -0.26 3.37 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 40 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 41 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.36 8.41 5.77 -40.82 -0.24 8.18 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 46 H 0.13 1.47 7.62 -52.49 -0.40 1.07 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -35.64 381.94 -10.14 -45.78 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.71 Total: 8.71 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -4.34 Total: -9.77 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.22 Total: -58.89 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.64 -10.14 -45.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086245607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.382 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds