Wall clock time and date at job start Tue Mar 31 2020 15:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36560 * 125.07142 * 2 1 4 4 C 1.34453 * 109.97742 * 179.97438 * 3 2 1 5 5 C 1.46255 * 107.03405 * 0.02562 * 4 3 2 6 6 C 1.39914 * 133.83754 * 179.97438 * 5 4 3 7 7 C 1.36206 * 119.95546 * 179.76100 * 6 5 4 8 8 C 1.40237 * 120.38097 * 0.51565 * 7 6 5 9 9 C 1.47578 * 119.83265 * 179.75939 * 8 7 6 10 10 O 1.21587 * 119.99859 * 179.72661 * 9 8 7 11 11 N 1.34774 * 119.99896 * 359.71962 * 9 8 7 12 12 C 1.46497 * 119.99932 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47203 * 180.02562 * 12 11 9 14 14 H 1.09008 * 112.84868 * 316.19908 * 13 12 11 15 15 C 1.53775 * 113.69017 * 87.47048 * 13 12 11 16 16 C 1.53779 * 87.08438 * 139.99386 * 15 13 12 17 17 H 1.09002 * 113.61731 * 89.11293 * 16 15 13 18 18 N 1.46500 * 113.68825 * 220.00754 * 16 15 13 19 19 C 1.36940 * 119.99935 * 254.05682 * 18 16 15 20 20 H 1.08002 * 119.99799 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99860 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99529 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00218 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47321 * 89.99965 * 23 21 19 25 25 H 1.48501 * 109.47334 * 210.00202 * 23 21 19 26 26 H 1.48504 * 109.46914 * 329.99630 * 23 21 19 27 27 C 1.53777 * 113.61649 * 185.00515 * 13 12 11 28 28 C 1.39285 * 120.33389 * 359.47679 * 8 7 6 29 29 C 1.37819 * 125.06673 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47068 * 270.00120 * 1 2 3 31 31 H 1.09006 * 109.47213 * 29.99698 * 1 2 3 32 32 H 1.09001 * 109.47681 * 150.00160 * 1 2 3 33 33 H 1.08008 * 125.00965 * 359.97438 * 3 2 1 34 34 H 1.08001 * 126.48161 * 179.97438 * 4 3 2 35 35 H 1.07994 * 120.01767 * 0.02562 * 6 5 4 36 36 H 1.08000 * 119.80650 * 180.24667 * 7 6 5 37 37 H 0.97004 * 120.00158 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46697 * 60.00384 * 12 11 9 39 39 H 1.08997 * 109.47634 * 300.00373 * 12 11 9 40 40 H 1.08993 * 113.61636 * 25.43750 * 15 13 12 41 41 H 1.09008 * 113.61006 * 254.53993 * 15 13 12 42 42 H 0.96998 * 119.99853 * 74.06469 * 18 16 15 43 43 H 0.97009 * 119.99277 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.61941 * 105.38293 * 27 13 12 45 45 H 1.09005 * 113.61136 * 334.48457 * 27 13 12 46 46 H 1.07999 * 120.16578 * 180.27554 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1177 0.0000 4 6 3.5478 0.7675 0.0006 5 6 3.5973 -0.6942 0.0003 6 6 4.6387 -1.6285 0.0002 7 6 4.3569 -2.9611 0.0049 8 6 3.0266 -3.4047 -0.0010 9 6 2.7351 -4.8514 -0.0012 10 8 1.5828 -5.2393 -0.0013 11 7 3.7462 -5.7425 -0.0014 12 6 3.4568 -7.1786 -0.0010 13 6 4.7701 -7.9635 -0.0007 14 1 5.5055 -7.5585 -0.6961 15 6 5.3323 -8.2267 1.4062 16 6 5.7117 -9.6307 0.9065 17 1 6.7044 -9.6815 0.4592 18 7 5.4766 -10.6895 1.8913 19 6 6.5341 -11.2642 2.5444 20 1 7.5415 -10.9366 2.3337 21 6 6.3114 -12.2678 3.4771 22 7 7.3278 -12.8198 4.1052 23 14 4.5691 -12.8349 3.8409 24 1 4.2095 -13.9478 2.9259 25 1 4.4846 -13.3035 5.2475 26 1 3.6281 -11.7040 3.6387 27 6 4.5789 -9.4844 -0.1232 28 6 1.9790 -2.4868 -0.0008 29 6 2.2568 -1.1280 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.8817 2.1331 -0.0004 34 1 4.3939 1.4387 0.0003 35 1 5.6653 -1.2933 0.0007 36 1 5.1627 -3.6802 0.0089 37 1 4.6655 -5.4330 -0.0010 38 1 2.8811 -7.4334 -0.8908 39 1 2.8816 -7.4332 0.8892 40 1 4.5713 -8.2318 2.1866 41 1 6.1921 -7.6051 1.6562 42 1 4.5718 -10.9835 2.0806 43 1 7.1721 -13.5214 4.7568 44 1 4.8303 -9.8783 -1.1079 45 1 3.6118 -9.8334 0.2390 46 1 0.9554 -2.8314 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086245607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:22 Heat of formation + Delta-G solvation = 39.858441 kcal Electronic energy + Delta-G solvation = -26016.651828 eV Core-core repulsion = 22292.838589 eV Total energy + Delta-G solvation = -3723.813239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32786 -40.96298 -39.88224 -37.71929 -36.16548 -35.05476 -33.82902 -32.77295 -31.38550 -30.63754 -28.52552 -27.15840 -26.46330 -25.69599 -24.23181 -23.20601 -22.36249 -21.61023 -21.19840 -20.60410 -19.35655 -18.68216 -17.85026 -17.37853 -16.85544 -16.75865 -16.50603 -16.24086 -16.00140 -15.90888 -15.31406 -14.98775 -14.77804 -14.67965 -14.50877 -14.34755 -13.98276 -13.87975 -13.74126 -13.24654 -13.22621 -13.18205 -13.06265 -12.79296 -12.70233 -12.20382 -12.12921 -12.01985 -11.89557 -11.69386 -11.61072 -11.16097 -10.98631 -10.84875 -10.70497 -10.13023 -9.25916 -9.24264 -8.63092 -8.02256 -5.34257 -0.26904 0.46337 1.37758 1.40050 1.47183 1.56972 1.81231 2.03326 2.20552 2.48148 2.93557 3.28116 3.57615 3.61133 3.71101 3.76492 3.86254 3.88296 3.96754 4.09748 4.12545 4.26402 4.29111 4.38480 4.39979 4.49867 4.56241 4.63392 4.68224 4.72271 4.79027 4.96456 4.98261 4.99763 5.00899 5.04428 5.22580 5.29110 5.33045 5.42582 5.47888 5.66882 5.72686 5.76192 5.79221 6.14224 6.23868 6.35628 6.52363 7.08788 7.17180 7.87428 8.04887 9.19244 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.001922 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.179800 B =14563.524684 C =14858.206283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.489 5.489 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.104 4.104 6 C -0.081 4.081 7 C -0.115 4.115 8 C -0.138 4.138 9 C 0.557 3.443 10 O -0.588 6.588 11 N -0.707 5.707 12 C 0.137 3.863 13 C -0.097 4.097 14 H 0.122 0.878 15 C -0.156 4.156 16 C 0.146 3.854 17 H 0.080 0.920 18 N -0.745 5.745 19 C -0.230 4.230 20 H 0.060 0.940 21 C -0.067 4.067 22 N -0.984 5.984 23 Si 0.953 3.047 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.256 1.256 27 C -0.135 4.135 28 C -0.071 4.071 29 C 0.058 3.942 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.210 0.790 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.845 33.650 -13.492 38.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.172 5.172 3 C -0.057 4.057 4 C -0.252 4.252 5 C -0.109 4.109 6 C -0.099 4.099 7 C -0.135 4.135 8 C -0.142 4.142 9 C 0.346 3.654 10 O -0.471 6.471 11 N -0.359 5.359 12 C 0.013 3.987 13 C -0.116 4.116 14 H 0.140 0.860 15 C -0.196 4.196 16 C 0.037 3.963 17 H 0.098 0.902 18 N -0.386 5.386 19 C -0.361 4.361 20 H 0.078 0.922 21 C -0.258 4.258 22 N -0.634 5.634 23 Si 0.781 3.219 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.180 1.180 27 C -0.174 4.174 28 C -0.092 4.092 29 C -0.048 4.048 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.226 0.774 34 H 0.187 0.813 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.198 0.802 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.791 33.306 -13.434 38.123 hybrid contribution -0.526 -0.908 0.809 1.325 sum -13.317 32.398 -12.624 37.234 Atomic orbital electron populations 1.22233 0.75249 1.05613 1.04108 1.44157 1.07277 1.03903 1.61842 1.22590 0.90203 0.92257 1.00661 1.22075 0.97474 0.91899 1.13734 1.19881 0.92050 0.95303 1.03669 1.20509 0.99322 0.91328 0.98768 1.20946 0.94542 0.96819 1.01161 1.19463 0.94744 0.91280 1.08705 1.18486 0.84690 0.86738 0.75512 1.90736 1.22227 1.81546 1.52553 1.45807 1.09857 1.06258 1.73942 1.21303 0.97113 0.78723 1.01532 1.22484 0.96298 0.94759 0.98107 0.86037 1.23750 1.00575 0.99130 0.96194 1.21939 0.97781 0.86959 0.89646 0.90242 1.42803 1.04483 1.43800 1.47467 1.19138 0.88591 1.13095 1.15275 0.92157 1.25500 1.00996 0.99694 0.99628 1.69884 1.31495 1.30520 1.31550 0.85436 0.80927 0.78761 0.76804 1.20390 1.22443 1.18034 1.23341 0.99151 0.94823 1.00070 1.20047 0.99301 0.89400 1.00486 1.18228 0.91434 0.88316 1.06863 0.90402 0.86800 0.90501 0.77367 0.81279 0.82849 0.83260 0.74693 0.91253 0.93040 0.91925 0.91484 0.80234 0.93452 0.89741 0.90537 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.02 127.77 1.41 1.91 16 2 N -0.49 -6.79 3.18 -539.40 -1.71 -8.51 16 3 C 0.07 0.68 11.28 83.09 0.94 1.62 16 4 C -0.23 -2.91 11.08 23.49 0.26 -2.65 16 5 C -0.10 -1.89 6.37 -20.14 -0.13 -2.02 16 6 C -0.08 -1.31 10.03 22.20 0.22 -1.08 16 7 C -0.11 -1.99 9.46 22.28 0.21 -1.78 16 8 C -0.14 -3.16 5.87 -20.08 -0.12 -3.28 16 9 C 0.56 14.94 7.76 86.71 0.67 15.61 16 10 O -0.59 -20.39 16.31 -3.99 -0.07 -20.46 16 11 N -0.71 -15.29 5.50 -466.24 -2.57 -17.86 16 12 C 0.14 3.25 5.51 86.38 0.48 3.73 16 13 C -0.10 -2.19 3.75 -10.27 -0.04 -2.22 16 14 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 15 C -0.16 -4.65 7.43 31.12 0.23 -4.42 16 16 C 0.15 5.17 4.47 45.52 0.20 5.38 16 17 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 18 N -0.74 -34.49 5.21 -320.44 -1.67 -36.16 16 19 C -0.23 -13.10 10.45 84.03 0.88 -12.22 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 23 Si 0.95 46.35 27.74 68.60 1.90 48.25 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 27 C -0.13 -3.64 7.39 31.12 0.23 -3.41 16 28 C -0.07 -1.64 9.48 22.63 0.21 -1.43 16 29 C 0.06 1.15 6.80 38.96 0.26 1.42 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.21 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.15 1.75 6.36 -2.91 -0.02 1.73 16 37 H 0.41 6.50 6.46 -92.71 -0.60 5.90 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.44 7.85 -2.39 -0.02 1.42 16 40 H 0.06 2.09 7.90 -2.39 -0.02 2.07 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.36 16.43 5.77 -92.71 -0.53 15.90 16 43 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.08 2.14 8.07 -2.38 -0.02 2.12 16 46 H 0.12 2.90 7.62 -2.91 -0.02 2.88 16 Total: -1.00 -80.35 381.94 2.39 -77.95 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.19 Total: 28.42 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 6.39 Total: -8.37 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.65 Total: -125.80 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.07 Total: -20.46 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.25 kcal Total: -80.35 2.39 -77.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086245607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.813 kcal (2) G-P(sol) polarization free energy of solvation -80.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds