Wall clock time and date at job start Tue Mar 31 2020 15:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47665 * 2 1 4 4 C 1.34228 * 117.00240 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00030 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99772 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.63186 * 29.60784 * 6 4 3 8 8 C 1.53247 * 109.63208 * 149.99733 * 6 4 3 9 9 N 1.46471 * 109.79803 * 181.94359 * 8 6 4 10 10 C 1.46903 * 110.99622 * 162.19870 * 9 8 6 11 11 C 1.53007 * 109.46658 * 191.69039 * 10 9 8 12 12 C 1.52997 * 109.47056 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46726 * 60.00379 * 12 11 10 14 14 C 1.50692 * 109.47308 * 59.99886 * 13 12 11 15 15 H 1.08000 * 119.99961 * 240.00000 * 14 13 12 16 16 C 1.37885 * 120.00167 * 60.00134 * 14 13 12 17 17 N 1.31512 * 119.99457 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47232 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47268 * 119.99573 * 18 16 14 21 21 H 1.48500 * 109.47107 * 239.99889 * 18 16 14 22 22 C 1.53007 * 109.47044 * 299.99628 * 13 12 11 23 23 C 1.52991 * 109.46759 * 60.00455 * 22 13 12 24 24 C 1.46506 * 112.53519 * 287.22524 * 9 8 6 25 25 C 1.53248 * 109.79275 * 72.77557 * 24 9 8 26 26 S 1.81899 * 108.50379 * 297.96205 * 25 24 9 27 27 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46465 * 299.99991 * 1 2 3 29 29 H 1.08996 * 109.47259 * 59.99720 * 1 2 3 30 30 H 1.08999 * 109.46833 * 239.99350 * 2 1 3 31 31 H 1.09003 * 109.46914 * 120.00256 * 2 1 3 32 32 H 1.08993 * 109.41082 * 302.02976 * 8 6 4 33 33 H 1.09005 * 109.40398 * 61.86703 * 8 6 4 34 34 H 1.08998 * 109.47080 * 311.68584 * 10 9 8 35 35 H 1.08998 * 109.47036 * 300.00148 * 11 10 9 36 36 H 1.09001 * 109.46788 * 59.99898 * 11 10 9 37 37 H 1.08998 * 109.47334 * 300.00625 * 12 11 10 38 38 H 1.08994 * 109.47403 * 179.97438 * 12 11 10 39 39 H 1.09007 * 109.46816 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99385 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.47036 * 300.00053 * 22 13 12 42 42 H 1.09001 * 109.46788 * 180.02562 * 22 13 12 43 43 H 1.09004 * 109.47233 * 180.02562 * 23 22 13 44 44 H 1.08998 * 109.47675 * 59.99989 * 23 22 13 45 45 H 1.08995 * 109.46779 * 312.65695 * 24 9 8 46 46 H 1.09003 * 109.34893 * 192.82003 * 24 9 8 47 47 H 1.09001 * 109.62507 * 178.25817 * 25 24 9 48 48 H 1.09001 * 109.63001 * 57.67069 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 -0.0012 7 1 3.2362 3.6170 0.5061 8 6 5.2730 2.9354 0.7201 9 7 5.8146 4.2957 0.7622 10 6 6.8651 4.4126 1.7824 11 6 7.2004 5.8892 2.0022 12 6 8.2940 6.0111 3.0652 13 6 9.5465 5.2682 2.5956 14 6 10.0330 5.8707 1.3029 15 1 10.0967 5.2615 0.4134 16 6 10.3968 7.1999 1.2557 17 7 10.3187 7.9418 2.3387 18 14 10.9991 7.9470 -0.3469 19 1 10.9934 6.9096 -1.4097 20 1 10.1029 9.0639 -0.7401 21 1 12.3803 8.4610 -0.1651 22 6 9.2113 3.7916 2.3758 23 6 8.1176 3.6698 1.3129 24 6 6.3002 4.7474 -0.5441 25 6 5.1121 5.0385 -1.4671 26 16 4.1802 3.4958 -1.7127 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.1405 2.5667 1.7372 33 1 5.9670 2.2857 0.1869 34 1 6.5136 3.9767 2.7175 35 1 7.5518 6.3251 1.0671 36 1 6.3082 6.4183 2.3371 37 1 7.9422 5.5752 4.0002 38 1 8.5332 7.0629 3.2215 39 1 10.3256 5.3546 3.3531 40 1 10.5743 8.8770 2.3054 41 1 8.8595 3.3558 3.3108 42 1 10.1037 3.2623 2.0417 43 1 7.8784 2.6179 1.1565 44 1 8.4694 4.1056 0.3778 45 1 6.9225 3.9708 -0.9887 46 1 6.8903 5.6549 -0.4160 47 1 5.4756 5.4037 -2.4276 48 1 4.4665 5.7872 -1.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:22 Heat of formation + Delta-G solvation = -93.999375 kcal Electronic energy + Delta-G solvation = -27069.388306 eV Core-core repulsion = 23442.921756 eV Total energy + Delta-G solvation = -3626.466549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.166 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73980 -39.25643 -37.01109 -36.09008 -32.70885 -32.28031 -31.59277 -30.57451 -29.66807 -27.56710 -25.16407 -24.36940 -23.30279 -22.43786 -21.57631 -20.89066 -20.03855 -18.54623 -17.96589 -17.41414 -16.78687 -16.14841 -15.81482 -15.45914 -14.90905 -14.78111 -14.58831 -14.05358 -13.91330 -13.66538 -13.43639 -13.35521 -13.12594 -12.97423 -12.74576 -12.23685 -12.19804 -12.07954 -11.84649 -11.63597 -11.50411 -11.32758 -11.13131 -11.01533 -10.93679 -10.81673 -10.61982 -10.54664 -10.25562 -10.12123 -9.90831 -9.58364 -9.28087 -8.96690 -8.66936 -8.30342 -8.07951 -7.79922 -5.99285 -4.03778 1.03319 2.16127 2.32402 2.49219 3.25772 3.35492 3.37731 3.94225 4.32623 4.41491 4.60094 4.61099 4.67514 4.88655 4.94434 5.00061 5.21548 5.28047 5.31387 5.34982 5.43298 5.44620 5.54367 5.63544 5.66757 5.74031 5.93225 5.95127 6.03574 6.15188 6.21468 6.38587 6.45314 6.54932 6.63910 6.74121 6.81211 6.96468 7.08721 7.21522 7.31280 7.46465 7.49832 7.55624 7.72712 7.92421 8.14740 8.46767 8.98972 9.59565 11.06522 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.003150 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.865964 B = 8886.943904 C = 9535.970679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.488 3.512 5 O -0.491 6.491 6 C -0.050 4.050 7 H 0.127 0.873 8 C 0.070 3.930 9 N -0.545 5.545 10 C 0.098 3.902 11 C -0.089 4.089 12 C -0.107 4.107 13 C 0.042 3.958 14 C -0.500 4.500 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.881 3.119 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.103 4.103 23 C -0.137 4.137 24 C 0.046 3.954 25 C -0.072 4.072 26 S -0.230 6.230 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.014 0.986 38 H 0.093 0.907 39 H 0.024 0.976 40 H 0.258 0.742 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 -10.215 -4.221 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.328 3.672 5 O -0.377 6.377 6 C -0.179 4.179 7 H 0.145 0.855 8 C -0.060 4.060 9 N -0.268 5.268 10 C -0.009 4.009 11 C -0.127 4.127 12 C -0.146 4.146 13 C 0.024 3.976 14 C -0.538 4.538 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.709 3.291 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.141 4.141 23 C -0.175 4.175 24 C -0.083 4.083 25 C -0.221 4.221 26 S -0.004 6.004 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.111 0.889 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.544 -10.520 -5.009 21.061 hybrid contribution 1.322 0.352 -0.030 1.368 sum -16.223 -10.168 -5.039 19.798 Atomic orbital electron populations 1.21808 0.92412 1.03006 1.03702 1.23078 0.95513 0.79921 1.02764 1.86511 1.23826 1.32618 1.83818 1.22596 0.80882 0.91024 0.72714 1.90685 1.60419 1.42354 1.44255 1.22885 1.01749 0.94196 0.99111 0.85534 1.22016 0.91888 0.91427 1.00654 1.61419 1.36814 1.21510 1.07068 1.21792 0.88057 0.98778 0.92275 1.21433 0.97455 0.92247 1.01577 1.21515 0.95000 1.04294 0.93757 1.18707 0.93486 0.88712 0.96684 1.21151 1.42391 0.94686 0.95583 0.92817 1.24931 0.95768 0.97400 0.95805 1.69874 1.48616 1.07152 1.27220 0.86714 0.78645 0.79317 0.84419 1.19879 1.21082 1.21168 1.21496 0.96517 1.00138 0.95952 1.22082 0.96536 0.97585 1.01331 1.22368 0.94784 1.02745 0.88448 1.23716 0.99353 0.95282 1.03746 1.86918 1.74494 1.31813 1.07157 0.90155 0.91366 0.91331 0.91086 0.91055 0.89651 0.91895 0.91158 0.90901 0.94105 0.96722 0.88864 0.95791 0.93185 0.94854 0.93620 0.94613 0.90720 0.92892 0.87562 0.86957 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -4.12 10.22 -39.25 -0.40 -4.52 16 4 C 0.49 6.52 7.05 36.01 0.25 6.78 16 5 O -0.49 -7.65 15.98 -18.75 -0.30 -7.94 16 6 C -0.05 -0.64 3.23 -27.76 -0.09 -0.73 16 7 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 8 C 0.07 0.98 3.71 -3.93 -0.01 0.96 16 9 N -0.54 -8.07 4.33 -227.02 -0.98 -9.05 16 10 C 0.10 1.65 2.17 -67.71 -0.15 1.51 16 11 C -0.09 -1.73 4.94 -26.73 -0.13 -1.86 16 12 C -0.11 -2.37 5.24 -26.73 -0.14 -2.51 16 13 C 0.04 1.00 2.59 -91.77 -0.24 0.76 16 14 C -0.50 -12.66 6.61 -34.44 -0.23 -12.89 16 15 H 0.05 1.37 6.71 -52.49 -0.35 1.02 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 18 Si 0.88 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.10 -2.06 5.41 -26.73 -0.14 -2.21 16 23 C -0.14 -2.47 4.34 -26.74 -0.12 -2.59 16 24 C 0.05 0.66 4.09 -3.91 -0.02 0.64 16 25 C -0.07 -0.88 6.69 37.29 0.25 -0.63 16 26 S -0.23 -3.01 21.76 -107.50 -2.34 -5.35 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 33 H 0.06 0.98 7.06 -51.93 -0.37 0.61 16 34 H 0.07 1.18 7.79 -51.93 -0.40 0.77 16 35 H 0.07 1.53 5.32 -51.93 -0.28 1.26 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.61 7.17 -51.93 -0.37 0.23 16 44 H 0.07 1.46 5.21 -51.93 -0.27 1.19 16 45 H 0.05 0.81 7.10 -51.93 -0.37 0.44 16 46 H 0.11 1.69 5.86 -51.93 -0.30 1.39 16 47 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -27.68 372.50 -11.11 -38.80 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.06 Total: 1.77 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.24 Total: -11.02 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.36 Total: -32.72 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.70 Total: -12.46 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.34 Total: -5.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.68 -11.11 -38.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.204 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds