Wall clock time and date at job start Tue Mar 31 2020 14:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46277 * 2 1 4 4 C 1.52996 * 109.47228 * 240.00250 * 2 1 3 5 5 N 1.46499 * 109.47074 * 184.99637 * 4 2 1 6 6 C 1.46496 * 120.00275 * 269.99918 * 5 4 2 7 7 C 1.36937 * 119.99492 * 90.00174 * 5 4 2 8 8 H 1.07990 * 120.00423 * 22.33886 * 7 5 4 9 9 C 1.38813 * 119.99396 * 202.33576 * 7 5 4 10 10 N 1.31619 * 120.00312 * 11.36031 * 9 7 5 11 11 Si 1.86801 * 119.99823 * 191.36134 * 9 7 5 12 12 H 1.48493 * 109.47394 * 89.99874 * 11 9 7 13 13 H 1.48497 * 109.47300 * 210.00158 * 11 9 7 14 14 H 1.48500 * 109.47091 * 329.99869 * 11 9 7 15 15 N 1.46494 * 109.46937 * 120.00040 * 2 1 3 16 16 C 1.34780 * 120.00161 * 274.72158 * 15 2 1 17 17 O 1.21278 * 119.99926 * 0.28335 * 16 15 2 18 18 C 1.50695 * 120.00169 * 180.27751 * 16 15 2 19 19 C 1.50693 * 109.47429 * 180.02562 * 18 16 15 20 20 C 1.36211 * 120.66694 * 264.72300 * 19 18 16 21 21 N 1.32581 * 121.87470 * 179.74318 * 20 19 18 22 22 C 1.31268 * 122.77532 * 0.55296 * 21 20 19 23 23 C 1.40392 * 119.88157 * 359.72133 * 22 21 20 24 24 C 1.40388 * 122.08105 * 179.97438 * 23 22 21 25 25 C 1.36162 * 119.51562 * 180.02562 * 24 23 22 26 26 C 1.39377 * 121.09307 * 0.04903 * 25 24 23 27 27 C 1.36213 * 121.02170 * 359.97008 * 26 25 24 28 28 C 1.40233 * 119.48112 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47160 * 299.99704 * 1 2 3 31 31 H 1.09004 * 109.47155 * 60.00104 * 1 2 3 32 32 H 1.09005 * 109.47026 * 305.00094 * 4 2 1 33 33 H 1.09004 * 109.47231 * 64.99314 * 4 2 1 34 34 H 1.09003 * 109.47069 * 94.22481 * 6 5 4 35 35 H 1.08997 * 109.47167 * 214.22941 * 6 5 4 36 36 H 1.09005 * 109.47021 * 334.23195 * 6 5 4 37 37 H 0.96997 * 119.99717 * 179.97438 * 10 9 7 38 38 H 0.96997 * 119.99891 * 95.00852 * 15 2 1 39 39 H 1.09006 * 109.47217 * 300.00671 * 18 16 15 40 40 H 1.08998 * 109.47144 * 60.00306 * 18 16 15 41 41 H 1.07994 * 119.06117 * 359.97438 * 20 19 18 42 42 H 1.08000 * 120.05663 * 179.74514 * 22 21 20 43 43 H 1.08007 * 120.23849 * 0.05199 * 24 23 22 44 44 H 1.08002 * 119.45248 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.48624 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.25902 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7612 7 6 4.0850 -1.9157 -0.6023 8 1 3.5339 -2.8397 -0.5087 9 6 5.3863 -1.8324 -0.1264 10 7 5.9795 -0.6611 -0.0339 11 14 6.2957 -3.3826 0.3827 12 1 7.0231 -3.9367 -0.7873 13 1 7.2651 -3.0569 1.4594 14 1 5.3217 -4.3868 0.8809 15 7 2.0183 -0.6906 1.1961 16 6 2.1523 -0.0169 2.3558 17 8 1.8638 1.1598 2.4103 18 6 2.6605 -0.7258 3.5846 19 6 2.7159 0.2436 4.7370 20 6 3.8728 0.8943 5.0425 21 7 3.9472 1.7557 6.0477 22 6 2.9244 2.0344 6.8219 23 6 1.6860 1.4131 6.5953 24 6 0.5623 1.6765 7.3947 25 6 -0.6136 1.0438 7.1283 26 6 -0.7207 0.1373 6.0751 27 6 0.3482 -0.1433 5.2789 28 6 1.5757 0.4894 5.5231 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.6022 0.9458 -0.9801 35 1 5.2403 -0.2026 -2.1812 36 1 3.7810 0.7486 -2.5470 37 1 6.8887 -0.6029 0.2991 38 1 2.2491 -1.6317 1.1525 39 1 1.9893 -1.5478 3.8336 40 1 3.6589 -1.1179 3.3911 41 1 4.7537 0.7061 4.4467 42 1 3.0353 2.7406 7.6314 43 1 0.6301 2.3763 8.2146 44 1 -1.4774 1.2475 7.7437 45 1 -1.6660 -0.3501 5.8873 46 1 0.2515 -0.8481 4.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:07 Heat of formation + Delta-G solvation = 36.120653 kcal Electronic energy + Delta-G solvation = -28157.465180 eV Core-core repulsion = 24433.489858 eV Total energy + Delta-G solvation = -3723.975322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.91794 -39.03828 -37.28895 -36.35611 -34.14972 -33.77120 -31.46829 -31.15804 -30.46749 -29.85639 -27.51477 -26.18156 -25.63138 -23.95184 -23.49252 -22.22312 -21.40102 -20.13060 -19.59078 -17.92416 -17.52907 -16.94502 -16.35252 -16.33896 -15.54697 -14.96612 -14.83933 -14.45887 -14.34771 -14.12257 -13.82004 -13.62966 -13.45084 -13.14611 -13.05422 -12.78718 -12.61607 -12.23861 -12.09102 -12.02701 -11.85788 -11.52823 -11.38786 -11.27750 -11.02073 -10.90066 -10.72458 -10.41827 -10.26317 -10.07788 -10.02356 -9.86503 -9.36565 -9.18831 -9.03827 -8.61241 -8.25682 -7.95241 -6.81547 -5.77327 -3.24322 0.40232 0.96137 1.94946 3.09379 3.29444 3.30860 3.37107 3.40212 3.86288 4.23138 4.41796 4.42950 4.59965 4.72418 4.78138 4.89928 5.04577 5.17967 5.20946 5.31283 5.34901 5.43316 5.53195 5.61206 5.66629 5.73969 5.82335 5.89264 5.96321 5.99299 6.05967 6.10222 6.15486 6.24037 6.33654 6.43916 6.49757 6.51655 6.68981 6.73799 6.85594 6.88608 7.29907 7.36602 7.67119 7.77484 8.09918 8.29897 8.33401 8.96051 9.16715 9.80713 10.31156 11.26433 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003961 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.253216 B = 7066.957914 C = 8120.730471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.687 5.687 16 C 0.521 3.479 17 O -0.553 6.553 18 C -0.104 4.104 19 C -0.084 4.084 20 C 0.088 3.912 21 N -0.481 5.481 22 C 0.132 3.868 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.124 4.124 26 C -0.105 4.105 27 C -0.102 4.102 28 C -0.009 4.009 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.044 0.956 36 H -0.005 1.005 37 H 0.253 0.747 38 H 0.404 0.596 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 0.310 11.432 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.388 4.388 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.337 5.337 16 C 0.306 3.694 17 O -0.432 6.432 18 C -0.144 4.144 19 C -0.086 4.086 20 C -0.055 4.055 21 N -0.188 5.188 22 C -0.039 4.039 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.142 4.142 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.014 4.014 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.063 0.937 38 H 0.239 0.761 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.670 1.522 11.507 16.460 hybrid contribution 0.001 -1.599 0.063 1.600 sum -11.669 -0.077 11.570 16.432 Atomic orbital electron populations 1.22152 0.97031 1.01128 1.01468 1.21795 0.91657 0.98379 0.87046 0.90672 1.21181 0.85979 0.97831 0.93616 1.43881 0.98882 1.22621 1.66651 1.20797 0.92958 0.90468 0.93850 1.19086 0.97235 0.89427 1.33020 0.91577 1.25000 0.98607 0.96099 0.99453 1.70075 1.13366 1.21514 1.49285 0.86405 0.80014 0.82891 0.78087 1.21528 1.21706 1.20485 1.45693 1.65189 1.14254 1.08548 1.20079 0.77737 0.87164 0.84424 1.90658 1.51272 1.15940 1.85349 1.20616 1.05001 0.97443 0.91361 1.20078 0.93756 0.98790 0.95973 1.22133 0.97650 0.91909 0.93818 1.67425 1.32316 1.14186 1.04835 1.23119 0.87273 0.96488 0.97060 1.18998 0.96138 0.99031 0.97218 1.20934 0.92070 0.99188 0.98692 1.20860 0.97873 0.97376 0.98113 1.20927 0.98678 0.97734 0.95069 1.20970 0.91982 0.99725 0.99308 1.17976 0.93934 0.95370 0.94090 0.93066 0.93062 0.92361 0.93389 0.93080 0.95387 0.93699 0.98623 0.93689 0.76090 0.88399 0.87016 0.82800 0.82305 0.85194 0.85877 0.85824 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.49 37.16 0.35 -2.01 16 2 C 0.12 2.19 2.88 -67.93 -0.20 1.99 16 3 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 4 C 0.14 2.68 5.36 -4.04 -0.02 2.66 16 5 N -0.60 -13.93 2.82 -181.12 -0.51 -14.44 16 6 C 0.16 3.97 9.01 59.84 0.54 4.51 16 7 C -0.26 -6.36 8.02 -15.06 -0.12 -6.48 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.15 16 9 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 10 N -0.90 -24.86 10.59 55.49 0.59 -24.27 16 11 Si 0.90 20.37 29.57 -169.99 -5.03 15.34 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 N -0.69 -12.65 4.49 -53.81 -0.24 -12.89 16 16 C 0.52 9.91 7.79 -10.99 -0.09 9.83 16 17 O -0.55 -12.46 15.69 5.56 0.09 -12.37 16 18 C -0.10 -1.63 5.31 -29.04 -0.15 -1.78 16 19 C -0.08 -1.37 4.40 -104.44 -0.46 -1.83 16 20 C 0.09 1.52 10.72 -17.96 -0.19 1.32 16 21 N -0.48 -7.96 10.30 -13.16 -0.14 -8.09 16 22 C 0.13 1.81 11.05 -16.98 -0.19 1.62 16 23 C -0.11 -1.53 5.74 -106.86 -0.61 -2.15 16 24 C -0.09 -0.95 9.81 -39.52 -0.39 -1.33 16 25 C -0.12 -1.23 9.94 -39.90 -0.40 -1.62 16 26 C -0.10 -1.13 9.95 -39.89 -0.40 -1.53 16 27 C -0.10 -1.34 9.33 -39.56 -0.37 -1.71 16 28 C -0.01 -0.13 5.75 -106.81 -0.61 -0.74 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 35 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.40 7.20 7.40 -40.82 -0.30 6.90 16 39 H 0.10 1.23 6.83 -51.93 -0.35 0.88 16 40 H 0.11 1.78 8.05 -51.93 -0.42 1.36 16 41 H 0.15 2.63 8.05 -52.49 -0.42 2.20 16 42 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.13 1.55 6.64 -52.49 -0.35 1.20 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -32.09 380.16 -9.64 -41.73 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.74 Total: 8.42 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.39 Total: 0.85 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.30 Total: -59.70 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.09 -9.64 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.851 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds