Wall clock time and date at job start Tue Mar 31 2020 14:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 C 1.52995 * 109.47246 * 120.00383 * 2 1 3 5 5 N 1.46506 * 109.46971 * 174.99395 * 4 2 1 6 6 C 1.46494 * 120.00268 * 269.72056 * 5 4 2 7 7 C 1.36938 * 119.99577 * 90.00180 * 5 4 2 8 8 H 1.08000 * 120.00326 * 339.64670 * 7 5 4 9 9 C 1.38810 * 119.99499 * 159.64517 * 7 5 4 10 10 N 1.31616 * 120.00647 * 344.30887 * 9 7 5 11 11 Si 1.86804 * 119.99799 * 164.31281 * 9 7 5 12 12 H 1.48506 * 109.46900 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47443 * 119.99855 * 11 9 7 14 14 H 1.48502 * 109.47186 * 240.00248 * 11 9 7 15 15 N 1.46506 * 109.46791 * 240.00309 * 2 1 3 16 16 C 1.34773 * 119.99958 * 85.00247 * 15 2 1 17 17 O 1.21282 * 120.00223 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99763 * 180.02562 * 16 15 2 19 19 C 1.50705 * 109.47157 * 179.97438 * 18 16 15 20 20 C 1.36211 * 120.66766 * 264.71901 * 19 18 16 21 21 N 1.32573 * 121.87464 * 179.74774 * 20 19 18 22 22 C 1.31266 * 122.77653 * 0.54284 * 21 20 19 23 23 C 1.40402 * 119.88216 * 359.73372 * 22 21 20 24 24 C 1.40382 * 122.08049 * 179.97438 * 23 22 21 25 25 C 1.36156 * 119.51405 * 180.02562 * 24 23 22 26 26 C 1.39382 * 121.09555 * 0.04486 * 25 24 23 27 27 C 1.36219 * 121.02096 * 359.97438 * 26 25 24 28 28 C 1.40241 * 119.47998 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47096 * 59.99383 * 1 2 3 30 30 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46481 * 300.00003 * 1 2 3 32 32 H 1.08999 * 109.47114 * 54.99863 * 4 2 1 33 33 H 1.08997 * 109.47279 * 294.99439 * 4 2 1 34 34 H 1.09001 * 109.47741 * 265.09219 * 6 5 4 35 35 H 1.09002 * 109.47236 * 25.09056 * 6 5 4 36 36 H 1.09001 * 109.47266 * 145.08417 * 6 5 4 37 37 H 0.97001 * 120.00343 * 179.97438 * 10 9 7 38 38 H 0.97005 * 119.99911 * 265.00266 * 15 2 1 39 39 H 1.09003 * 109.47307 * 299.99430 * 18 16 15 40 40 H 1.08998 * 109.47258 * 60.00066 * 18 16 15 41 41 H 1.08003 * 119.05963 * 0.02562 * 20 19 18 42 42 H 1.08000 * 120.05921 * 179.75000 * 22 21 20 43 43 H 1.07996 * 120.23865 * 0.05392 * 24 23 22 44 44 H 1.08004 * 119.45537 * 180.02562 * 25 24 23 45 45 H 1.07994 * 119.49127 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.26042 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.1258 -1.9950 0.5664 7 6 4.2799 0.1647 1.7238 8 1 3.8663 1.1491 1.8857 9 6 5.6021 -0.0960 2.0565 10 7 6.0231 -1.3390 2.1559 11 14 6.7841 1.3177 2.3632 12 1 6.0689 2.6075 2.1891 13 1 7.3145 1.2281 3.7474 14 1 7.9086 1.2414 1.3963 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6487 -0.7287 -3.5878 19 6 2.6989 0.2396 -4.7416 20 6 1.6630 0.3258 -5.6218 21 7 1.6799 1.1723 -6.6420 22 6 2.6905 1.9746 -6.8831 23 6 3.8117 1.9607 -6.0381 24 6 4.9177 2.7982 -6.2530 25 6 5.9779 2.7411 -5.4007 26 6 5.9845 1.8636 -4.3177 27 6 4.9293 1.0361 -4.0783 28 6 3.8191 1.0679 -4.9345 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.6054 -1.7198 1.2950 33 1 1.7518 -0.1584 2.1369 34 1 4.3622 -2.7332 1.3326 35 1 3.4387 -2.4312 -0.1587 36 1 5.0419 -1.6899 0.0607 37 1 6.9472 -1.5211 2.3880 38 1 2.2489 -1.6318 -1.1528 39 1 3.6478 -1.1213 -3.3988 40 1 1.9757 -1.5504 -3.8327 41 1 0.8015 -0.3104 -5.4821 42 1 2.6594 2.6444 -7.7297 43 1 4.9272 3.4830 -7.0880 44 1 6.8281 3.3861 -5.5667 45 1 6.8393 1.8395 -3.6582 46 1 4.9476 0.3607 -3.2357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:12 Heat of formation + Delta-G solvation = 39.043909 kcal Electronic energy + Delta-G solvation = -28026.251988 eV Core-core repulsion = 24302.403428 eV Total energy + Delta-G solvation = -3723.848560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.01140 -39.29972 -37.33658 -36.49977 -34.26108 -33.94295 -31.50312 -31.18171 -30.56300 -30.02064 -27.70584 -26.25175 -25.65442 -24.00629 -23.55690 -22.34999 -21.39027 -20.28915 -19.88439 -17.99014 -17.60006 -16.87063 -16.80597 -16.38500 -15.51210 -15.16261 -14.95732 -14.57298 -14.36577 -14.21070 -13.82452 -13.68194 -13.58960 -13.30043 -13.22717 -12.88329 -12.76925 -12.27980 -12.12921 -12.08162 -11.83640 -11.72429 -11.46555 -11.35385 -11.06061 -10.88805 -10.67402 -10.66720 -10.23314 -10.11562 -10.01730 -9.90138 -9.51620 -9.40819 -9.06190 -8.69026 -8.47599 -8.02201 -6.82192 -5.77973 -3.21183 0.33986 0.91535 1.89737 3.01680 3.04819 3.34196 3.42772 3.45911 3.61390 4.11680 4.30346 4.46753 4.49737 4.67590 4.72294 4.87831 4.92613 5.10462 5.12865 5.20339 5.30262 5.32965 5.41938 5.44071 5.57945 5.62132 5.75367 5.77673 5.87406 5.92139 6.00405 6.04196 6.05771 6.15608 6.37409 6.42709 6.48790 6.49880 6.54615 6.60875 6.76788 6.82606 7.05284 7.24851 7.61049 7.77215 7.94326 7.96753 8.32081 8.65690 9.17930 9.81076 10.27878 11.27025 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.004238 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.038629 B = 6605.037565 C = 8346.224780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.251 4.251 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.908 5.908 11 Si 0.899 3.101 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.703 5.703 16 C 0.514 3.486 17 O -0.541 6.541 18 C -0.104 4.104 19 C -0.086 4.086 20 C 0.080 3.920 21 N -0.486 5.486 22 C 0.137 3.863 23 C -0.110 4.110 24 C -0.094 4.094 25 C -0.117 4.117 26 C -0.099 4.099 27 C -0.101 4.101 28 C -0.009 4.009 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.030 0.970 35 H -0.008 1.008 36 H 0.042 0.958 37 H 0.251 0.749 38 H 0.396 0.604 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 0.923 -15.701 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.101 0.899 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.380 4.380 8 H 0.086 0.914 9 C -0.195 4.195 10 N -0.553 5.553 11 Si 0.729 3.271 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.216 1.216 15 N -0.355 5.355 16 C 0.299 3.701 17 O -0.418 6.418 18 C -0.145 4.145 19 C -0.088 4.088 20 C -0.063 4.063 21 N -0.193 5.193 22 C -0.035 4.035 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.014 4.014 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.011 0.989 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.232 0.768 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.166 0.834 42 H 0.177 0.823 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.677 1.598 -16.137 17.181 hybrid contribution 1.670 0.268 0.931 1.930 sum -4.007 1.866 -15.206 15.835 Atomic orbital electron populations 1.22121 0.96573 1.01249 1.01768 1.21892 0.92085 0.98884 0.86106 0.89890 1.21048 0.85835 0.97534 0.94137 1.43852 0.99097 1.22567 1.66549 1.20809 0.94082 0.88946 0.93857 1.19219 0.92920 0.90306 1.35600 0.91369 1.24897 0.98505 0.96019 1.00115 1.70084 1.15895 1.16914 1.52440 0.86262 0.81288 0.82104 0.77422 1.20314 1.21750 1.21647 1.46024 1.66300 1.13894 1.09280 1.20232 0.78139 0.87377 0.84325 1.90698 1.50216 1.15816 1.85089 1.20641 1.04500 0.97736 0.91605 1.20024 0.94728 0.97564 0.96521 1.21938 0.97156 0.96515 0.90676 1.67376 1.27378 1.05123 1.19413 1.23098 0.87894 0.95311 0.97173 1.18989 0.96985 0.98414 0.96853 1.20916 0.92737 0.98102 0.99632 1.20928 0.98688 0.98864 0.95031 1.21042 0.98685 0.95052 0.97079 1.21076 0.92588 0.99709 0.98497 1.17977 0.94285 0.94781 0.94328 0.92947 0.93040 0.91996 0.94116 0.91977 0.95189 0.98927 0.93942 0.93856 0.76774 0.87634 0.87777 0.83365 0.82255 0.85142 0.85701 0.85416 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.04 2.88 -67.93 -0.20 1.84 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 C 0.14 2.70 5.29 -4.04 -0.02 2.68 16 5 N -0.60 -13.97 2.78 -181.12 -0.50 -14.48 16 6 C 0.17 3.74 8.52 59.84 0.51 4.25 16 7 C -0.25 -6.69 9.67 -15.06 -0.15 -6.84 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 10 N -0.91 -25.59 10.69 55.49 0.59 -25.00 16 11 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 N -0.70 -11.15 4.53 -53.81 -0.24 -11.40 16 16 C 0.51 8.44 7.79 -10.99 -0.09 8.35 16 17 O -0.54 -11.08 15.70 5.56 0.09 -10.99 16 18 C -0.10 -1.31 5.31 -29.03 -0.15 -1.47 16 19 C -0.09 -1.21 4.40 -104.44 -0.46 -1.67 16 20 C 0.08 1.10 10.72 -17.96 -0.19 0.91 16 21 N -0.49 -6.79 10.30 -13.16 -0.14 -6.93 16 22 C 0.14 1.68 11.05 -16.98 -0.19 1.49 16 23 C -0.11 -1.45 5.74 -106.85 -0.61 -2.07 16 24 C -0.09 -1.02 9.81 -39.52 -0.39 -1.41 16 25 C -0.12 -1.29 9.94 -39.90 -0.40 -1.69 16 26 C -0.10 -1.28 9.95 -39.88 -0.40 -1.68 16 27 C -0.10 -1.47 9.33 -39.56 -0.37 -1.84 16 28 C -0.01 -0.13 5.75 -106.81 -0.61 -0.74 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 34 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 35 H -0.01 -0.14 5.78 -51.93 -0.30 -0.44 16 36 H 0.04 1.04 7.22 -51.93 -0.37 0.66 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.40 5.63 6.22 -40.82 -0.25 5.38 16 39 H 0.11 1.23 6.83 -51.93 -0.35 0.87 16 40 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 41 H 0.15 1.68 8.05 -52.48 -0.42 1.26 16 42 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.13 1.97 6.65 -52.49 -0.35 1.62 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -33.36 378.31 -9.57 -42.93 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.60 Total: 5.32 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.44 Total: -1.82 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.29 Total: -57.80 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.36 -9.57 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.978 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds