Wall clock time and date at job start Tue Mar 31 2020 15:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47403 * 2 1 4 4 O 1.45196 * 109.47121 * 120.00377 * 2 1 3 5 5 C 1.34230 * 116.99716 * 269.99346 * 4 2 1 6 6 O 1.20825 * 120.00160 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00395 * 180.02562 * 5 4 2 8 8 C 1.52992 * 109.47431 * 180.02562 * 7 5 4 9 9 H 1.09006 * 110.27261 * 304.36172 * 8 7 5 10 10 C 1.55503 * 110.36817 * 182.25642 * 8 7 5 11 11 C 1.55305 * 100.69747 * 204.60657 * 10 8 7 12 12 C 1.52995 * 110.84967 * 275.83627 * 11 10 8 13 13 C 1.52998 * 110.84807 * 152.41380 * 11 10 8 14 14 C 1.54389 * 102.43486 * 34.12818 * 11 10 8 15 15 O 1.43243 * 107.58801 * 338.53936 * 14 11 10 16 16 C 1.50702 * 109.46984 * 239.99969 * 2 1 3 17 17 O 1.21277 * 120.00328 * 256.02962 * 16 2 1 18 18 N 1.34779 * 120.00205 * 76.02546 * 16 2 1 19 19 C 1.46504 * 119.99752 * 5.36690 * 18 16 2 20 20 C 1.46495 * 120.00338 * 185.36435 * 18 16 2 21 21 C 1.50706 * 109.47166 * 89.99858 * 20 18 16 22 22 H 1.08005 * 119.99475 * 0.02562 * 21 20 18 23 23 C 1.37869 * 120.00108 * 179.97438 * 21 20 18 24 24 N 1.31513 * 120.00449 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00203 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46769 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47017 * 119.99895 * 25 23 21 28 28 H 1.48494 * 109.47292 * 240.00365 * 25 23 21 29 29 H 1.09001 * 109.47129 * 306.13732 * 1 2 3 30 30 H 1.09004 * 109.47346 * 66.13534 * 1 2 3 31 31 H 1.09005 * 109.47490 * 186.13975 * 1 2 3 32 32 H 1.09000 * 109.46660 * 59.99676 * 7 5 4 33 33 H 1.09002 * 109.47052 * 300.00632 * 7 5 4 34 34 H 1.08997 * 111.33177 * 86.73090 * 10 8 7 35 35 H 1.09007 * 111.14503 * 322.40437 * 10 8 7 36 36 H 1.08997 * 109.46862 * 297.22773 * 12 11 10 37 37 H 1.09003 * 109.47073 * 57.22629 * 12 11 10 38 38 H 1.08998 * 109.47334 * 177.22910 * 12 11 10 39 39 H 1.09007 * 109.46834 * 182.77097 * 13 11 10 40 40 H 1.08993 * 109.47650 * 302.77613 * 13 11 10 41 41 H 1.09007 * 109.46846 * 62.77943 * 13 11 10 42 42 H 1.08990 * 109.82986 * 98.05464 * 14 11 10 43 43 H 1.09005 * 109.82829 * 218.93929 * 14 11 10 44 44 H 1.08995 * 109.47455 * 84.82228 * 19 18 16 45 45 H 1.08995 * 109.47262 * 204.82286 * 19 18 16 46 46 H 1.09000 * 109.46846 * 324.81927 * 19 18 16 47 47 H 1.08999 * 109.47572 * 209.99792 * 20 18 16 48 48 H 1.09001 * 109.47370 * 330.00225 * 20 18 16 49 49 H 0.96993 * 120.00526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2172 0.0640 2.2810 6 8 1.9975 1.2517 2.2505 7 6 2.7194 -0.5770 3.5491 8 6 2.8634 0.4890 4.6370 9 1 3.5098 1.2960 4.2919 10 6 3.4348 -0.1403 5.9392 11 6 2.9002 0.8590 7.0010 12 6 3.8294 2.0678 7.1276 13 6 2.7196 0.1698 8.3550 14 6 1.5359 1.2742 6.4096 15 8 1.5739 1.0052 5.0032 16 6 2.0323 -0.7104 -1.2305 17 8 2.4734 -1.8367 -1.1429 18 7 1.9911 -0.0942 -2.4284 19 6 1.5689 1.3058 -2.5179 20 6 2.3687 -0.8243 -3.6411 21 6 1.1504 -1.4919 -4.2253 22 1 0.1908 -1.3828 -3.7418 23 6 1.2606 -2.2410 -5.3775 24 7 2.4290 -2.3734 -5.9666 25 14 -0.2496 -3.0680 -6.1021 26 1 -1.4327 -2.7660 -5.2568 27 1 -0.4813 -2.5580 -7.4773 28 1 -0.0355 -4.5367 -6.1482 29 1 -0.3633 0.6060 0.8300 30 1 -0.3634 0.4158 -0.9398 31 1 -0.3634 -1.0218 0.1099 32 1 3.6884 -1.0400 3.3630 33 1 2.0106 -1.3373 3.8773 34 1 4.5246 -0.1552 5.9272 35 1 3.0319 -1.1400 6.1024 36 1 4.8082 1.7387 7.4765 37 1 3.9334 2.5496 6.1553 38 1 3.4087 2.7764 7.8411 39 1 2.2981 0.8772 9.0693 40 1 2.0455 -0.6793 8.2435 41 1 3.6868 -0.1792 8.7169 42 1 0.7391 0.6946 6.8756 43 1 1.3674 2.3376 6.5796 44 1 2.4228 1.9558 -2.3269 45 1 1.1773 1.5042 -3.5155 46 1 0.7924 1.4991 -1.7777 47 1 2.7859 -0.1285 -4.3691 48 1 3.1135 -1.5805 -3.3930 49 1 2.5066 -2.9006 -6.7770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885626708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:53 Heat of formation + Delta-G solvation = -174.518293 kcal Electronic energy + Delta-G solvation = -28562.613239 eV Core-core repulsion = 24489.902256 eV Total energy + Delta-G solvation = -4072.710983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81698 -40.06521 -38.82686 -36.35100 -34.91655 -34.85014 -32.93992 -32.63374 -31.43761 -28.08382 -27.81531 -27.71927 -26.34752 -26.02615 -24.42725 -22.96236 -21.78421 -20.61147 -19.70399 -18.76350 -17.79589 -17.09501 -16.61173 -16.44509 -15.99343 -15.93957 -15.64912 -15.11613 -14.95661 -14.60013 -14.40175 -14.04591 -13.99107 -13.63349 -13.55412 -13.19105 -12.97126 -12.77076 -12.45700 -12.29364 -12.28274 -12.10015 -12.05115 -11.98484 -11.80758 -11.67388 -11.34836 -11.23385 -11.22651 -11.15069 -10.90260 -10.89410 -10.66044 -10.53961 -10.36157 -10.17532 -9.74309 -9.63531 -8.87717 -8.45683 -7.70200 -6.06233 -4.11434 2.28780 2.54349 3.26844 3.29146 3.37030 3.41495 3.46873 3.88797 3.92304 4.24838 4.36173 4.42761 4.60106 4.62689 4.78424 4.82153 4.87826 4.99331 5.11554 5.12648 5.18124 5.19062 5.22992 5.25538 5.28429 5.36559 5.38261 5.47542 5.49580 5.57264 5.63953 5.69388 5.71897 5.76924 5.80718 5.88953 5.89235 6.12608 6.28651 6.53891 6.77983 7.00655 7.40877 7.48547 7.83446 7.90496 8.19919 8.31422 8.85136 9.00507 9.53764 11.01881 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.031808 B = 0.002136 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.077280 B =13103.504926 C =13163.020993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 H 0.101 0.899 4 O -0.329 6.329 5 C 0.460 3.540 6 O -0.500 6.500 7 C -0.114 4.114 8 C 0.095 3.905 9 H 0.081 0.919 10 C -0.143 4.143 11 C -0.101 4.101 12 C -0.140 4.140 13 C -0.136 4.136 14 C 0.058 3.942 15 O -0.365 6.365 16 C 0.510 3.490 17 O -0.522 6.522 18 N -0.597 5.597 19 C 0.074 3.926 20 C 0.245 3.755 21 C -0.528 4.528 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 8.863 26.799 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.119 0.881 4 O -0.245 6.245 5 C 0.302 3.698 6 O -0.387 6.387 7 C -0.152 4.152 8 C 0.037 3.963 9 H 0.099 0.901 10 C -0.181 4.181 11 C -0.102 4.102 12 C -0.197 4.197 13 C -0.193 4.193 14 C -0.019 4.019 15 O -0.284 6.284 16 C 0.294 3.706 17 O -0.397 6.397 18 N -0.331 5.331 19 C -0.070 4.070 20 C 0.126 3.874 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.265 8.569 26.473 27.854 hybrid contribution -0.750 -0.301 -0.453 0.927 sum 0.515 8.267 26.020 27.307 Atomic orbital electron populations 1.22150 0.92185 1.04077 1.03728 1.22625 0.96033 0.97280 0.82751 0.88090 1.86625 1.76590 1.41629 1.19649 1.23565 0.74705 0.86078 0.85410 1.90661 1.47565 1.16525 1.83984 1.21589 1.04824 0.99411 0.89355 1.22844 0.85820 0.94560 0.93074 0.90122 1.23526 1.01978 0.99342 0.93223 1.22124 0.95756 0.96125 0.96156 1.21843 0.98901 0.96614 1.02362 1.21757 1.02168 1.00296 0.95112 1.23270 0.96260 1.00597 0.81753 1.88543 1.32279 1.84907 1.22712 1.19798 0.80114 0.86824 0.83825 1.90686 1.45219 1.18439 1.85382 1.48078 1.65334 1.11916 1.07731 1.21829 0.99006 0.82657 1.03519 1.19368 0.96701 0.92077 0.79219 1.21471 0.94828 1.31313 1.09075 0.92295 1.24945 0.96279 0.96167 0.96757 1.69940 1.23158 1.40485 1.19671 0.86426 0.82807 0.79365 0.78728 1.19769 1.20953 1.20835 0.91199 0.89605 0.90732 0.86203 0.86879 0.89380 0.89710 0.92106 0.92073 0.92150 0.92223 0.92147 0.92081 0.91299 0.91412 0.93454 0.90104 0.92218 0.94642 0.93576 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.19 37.15 0.34 -2.17 16 2 C 0.07 1.26 2.14 -27.88 -0.06 1.20 16 3 H 0.10 1.64 6.31 -51.93 -0.33 1.31 16 4 O -0.33 -5.71 9.47 -45.75 -0.43 -6.14 16 5 C 0.46 6.78 7.83 36.01 0.28 7.06 16 6 O -0.50 -8.31 14.75 -23.45 -0.35 -8.65 16 7 C -0.11 -1.16 5.57 -27.89 -0.16 -1.31 16 8 C 0.09 0.91 2.63 -25.41 -0.07 0.84 16 9 H 0.08 0.83 7.65 -51.93 -0.40 0.43 16 10 C -0.14 -0.93 5.57 -24.18 -0.13 -1.06 16 11 C -0.10 -0.64 0.94 -152.56 -0.14 -0.78 16 12 C -0.14 -0.81 8.44 37.16 0.31 -0.50 16 13 C -0.14 -0.66 8.51 37.16 0.32 -0.34 16 14 C 0.06 0.48 6.99 37.89 0.26 0.75 16 15 O -0.37 -4.29 10.42 -47.12 -0.49 -4.78 16 16 C 0.51 11.24 6.95 -10.98 -0.08 11.16 16 17 O -0.52 -13.74 16.13 -13.54 -0.22 -13.96 16 18 N -0.60 -12.99 2.86 -182.96 -0.52 -13.51 16 19 C 0.07 1.20 9.79 59.85 0.59 1.79 16 20 C 0.24 6.46 5.18 -5.19 -0.03 6.43 16 21 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 22 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 25 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.24 6.33 -51.93 -0.33 0.92 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.46 8.03 -51.93 -0.42 0.04 16 35 H 0.08 0.49 7.97 -51.92 -0.41 0.08 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 41 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.07 0.51 7.80 -51.93 -0.40 0.11 16 43 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 46 H 0.06 0.83 4.92 -51.93 -0.26 0.57 16 47 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 48 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -35.64 397.73 -7.62 -43.26 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.33 Total: -2.64 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 1.02 Total: 9.43 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.21 Total: -39.32 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.49 Total: -33.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.64 -7.62 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885626708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.261 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds