Wall clock time and date at job start Tue Mar 31 2020 15:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47005 * 2 1 4 4 C 1.46903 * 110.99717 * 71.88849 * 3 2 1 5 5 C 1.52995 * 109.47328 * 67.77819 * 4 3 2 6 6 C 1.46907 * 111.00028 * 195.83645 * 3 2 1 7 7 C 1.50698 * 109.46953 * 173.20468 * 6 3 2 8 8 C 1.37965 * 120.07282 * 106.71167 * 7 6 3 9 9 C 1.38359 * 120.14063 * 180.29343 * 8 7 6 10 10 C 1.38405 * 120.29263 * 359.70389 * 9 8 7 11 11 C 1.37913 * 120.14542 * 0.02562 * 10 9 8 12 12 C 1.39569 * 120.07319 * 286.44915 * 7 6 3 13 13 C 1.48004 * 120.14360 * 0.02562 * 12 7 6 14 14 C 1.40019 * 119.86288 * 123.93365 * 13 12 7 15 15 C 1.36194 * 120.18943 * 179.97438 * 14 13 12 16 16 C 1.40946 * 119.89480 * 0.27460 * 15 14 13 17 17 C 1.40950 * 120.13167 * 179.72747 * 16 15 14 18 18 H 1.07999 * 119.99765 * 143.24302 * 17 16 15 19 19 C 1.40001 * 120.00194 * 323.24267 * 17 16 15 20 20 N 1.30817 * 120.00123 * 174.13373 * 19 17 16 21 21 Si 1.86797 * 120.00132 * 354.12917 * 19 17 16 22 22 H 1.48500 * 109.47295 * 89.01869 * 21 19 17 23 23 H 1.48498 * 109.47286 * 209.02232 * 21 19 17 24 24 H 1.48508 * 109.47166 * 329.02332 * 21 19 17 25 25 C 1.41162 * 119.72858 * 359.49583 * 16 15 14 26 26 F 1.35100 * 120.09491 * 180.24590 * 25 16 15 27 27 C 1.36576 * 119.81593 * 0.46235 * 25 16 15 28 28 H 1.08999 * 109.46572 * 304.67916 * 1 2 3 29 29 H 1.08995 * 109.47230 * 64.67893 * 1 2 3 30 30 H 1.08999 * 109.46832 * 184.67763 * 1 2 3 31 31 H 1.09004 * 109.46740 * 240.00268 * 2 1 3 32 32 H 1.08999 * 109.47108 * 120.00509 * 2 1 3 33 33 H 1.09003 * 109.46580 * 187.77875 * 4 3 2 34 34 H 1.08997 * 109.46944 * 307.77280 * 4 3 2 35 35 H 1.09004 * 109.46850 * 65.18222 * 5 4 3 36 36 H 1.09001 * 109.47260 * 185.18015 * 5 4 3 37 37 H 1.09002 * 109.47394 * 305.18474 * 5 4 3 38 38 H 1.09002 * 109.46851 * 53.20277 * 6 3 2 39 39 H 1.08997 * 109.46948 * 293.20417 * 6 3 2 40 40 H 1.08001 * 119.92663 * 359.97438 * 8 7 6 41 41 H 1.08006 * 119.85702 * 179.71707 * 9 8 7 42 42 H 1.08001 * 119.93020 * 180.02562 * 10 9 8 43 43 H 1.08004 * 120.07845 * 179.97438 * 11 10 9 44 44 H 1.08002 * 119.90603 * 0.02562 * 14 13 12 45 45 H 1.08000 * 120.05145 * 180.02562 * 15 14 13 46 46 H 0.97002 * 119.99994 * 179.97438 * 20 19 17 47 47 H 1.07999 * 119.95442 * 179.78574 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7931 2.0234 1.3035 5 6 2.6840 1.3621 2.3570 6 6 3.4391 1.4416 -0.3743 7 6 3.8616 2.8801 -0.5260 8 6 4.6635 3.4696 0.4295 9 6 5.0473 4.7921 0.2947 10 6 4.6351 5.5304 -0.8011 11 6 3.8380 4.9514 -1.7662 12 6 3.4470 3.6174 -1.6361 13 6 2.5910 2.9899 -2.6676 14 6 1.3608 3.5701 -3.0000 15 6 0.5680 2.9985 -3.9486 16 6 0.9848 1.8165 -4.5933 17 6 0.1657 1.2176 -5.5716 18 1 0.6118 0.7511 -6.4375 19 6 -1.2261 1.2274 -5.4208 20 7 -1.9912 0.7751 -6.3807 21 14 -1.9908 1.8861 -3.8490 22 1 -2.2234 3.3464 -3.9859 23 1 -3.2843 1.1998 -3.6023 24 1 -1.0724 1.6360 -2.7091 25 6 2.2280 1.2376 -4.2586 26 9 2.6370 0.1074 -4.8755 27 6 3.0143 1.8208 -3.3063 28 1 -0.3632 0.5847 0.8451 29 1 -0.3633 0.4395 -0.9289 30 1 -0.3633 -1.0242 0.0838 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0363 3.0838 1.2358 34 1 0.7472 1.9079 1.5878 35 1 3.7304 1.5565 2.1218 36 1 2.4503 1.7719 3.3396 37 1 2.5061 0.2867 2.3601 38 1 3.5869 0.9178 -1.3187 39 1 4.0388 0.9667 0.4022 40 1 4.9881 2.8990 1.2871 41 1 5.6713 5.2503 1.0477 42 1 4.9385 6.5621 -0.9007 43 1 3.5167 5.5287 -2.6206 44 1 1.0400 4.4739 -2.5034 45 1 -0.3803 3.4482 -4.2035 46 1 -2.9556 0.7815 -6.2761 47 1 3.9643 1.3779 -3.0461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243338607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:33 Heat of formation + Delta-G solvation = -0.352554 kcal Electronic energy + Delta-G solvation = -28843.899730 eV Core-core repulsion = 25098.422850 eV Total energy + Delta-G solvation = -3745.476880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -47.40238 -39.72348 -37.73566 -37.27127 -33.87905 -32.32846 -31.72971 -30.93770 -29.65473 -29.28663 -28.63527 -25.55238 -24.87722 -23.60350 -22.23093 -21.87536 -20.86750 -20.17629 -19.48737 -17.58428 -16.85482 -15.99514 -15.86422 -15.67074 -15.29549 -15.00374 -14.64610 -14.49661 -14.16169 -13.93823 -13.83007 -13.44920 -13.28457 -13.02287 -12.75527 -12.64197 -12.44322 -12.30936 -12.00520 -11.97123 -11.84903 -11.71704 -11.50522 -11.18329 -10.98607 -10.90756 -10.85833 -10.80392 -10.62403 -10.37372 -10.16257 -9.89894 -9.70306 -9.23397 -8.59667 -8.43524 -7.94470 -7.70264 -7.35208 -6.96178 -4.54465 1.53008 1.64210 2.48239 2.52170 3.07837 3.18554 3.29733 3.92340 3.94320 4.31310 4.47560 4.99058 5.00452 5.11867 5.16655 5.20592 5.25227 5.32008 5.36060 5.42078 5.48086 5.58164 5.70350 5.72875 5.73917 5.79185 5.83717 5.90687 5.99535 6.06238 6.09516 6.12082 6.22493 6.28425 6.32112 6.37760 6.47965 6.60184 6.64924 6.73527 6.78276 6.97660 7.05233 7.15847 7.32505 7.36976 7.39361 7.45523 7.59326 7.69350 7.92974 8.27349 8.50307 8.67229 10.04674 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.005133 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.210737 B = 5453.990190 C = 6315.252605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.514 5.514 4 C 0.049 3.951 5 C -0.192 4.192 6 C 0.091 3.909 7 C -0.080 4.080 8 C -0.115 4.115 9 C -0.142 4.142 10 C -0.119 4.119 11 C -0.123 4.123 12 C 0.023 3.977 13 C -0.143 4.143 14 C -0.054 4.054 15 C -0.216 4.216 16 C 0.073 3.927 17 C -0.435 4.435 18 H 0.094 0.906 19 C 0.082 3.918 20 N -0.810 5.810 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.232 1.232 25 C -0.003 4.003 26 F -0.158 7.158 27 C -0.093 4.093 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.287 0.713 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 3.839 14.783 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.237 5.237 4 C -0.079 4.079 5 C -0.251 4.251 6 C -0.035 4.035 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.160 4.160 10 C -0.138 4.138 11 C -0.141 4.141 12 C 0.023 3.977 13 C -0.144 4.144 14 C -0.073 4.073 15 C -0.235 4.235 16 C 0.069 3.931 17 C -0.464 4.464 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.434 5.434 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.220 1.220 24 H -0.155 1.155 25 C -0.023 4.023 26 F -0.137 7.137 27 C -0.112 4.112 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.922 3.934 14.227 16.303 hybrid contribution 0.037 -0.323 1.071 1.119 sum 6.959 3.610 15.298 17.190 Atomic orbital electron populations 1.21809 0.95035 1.00882 1.02950 1.22065 0.96256 0.88947 1.00379 1.62138 1.16673 1.16995 1.27892 1.22152 0.99333 0.99236 0.87201 1.22458 1.01272 1.01313 1.00046 1.21147 0.88208 0.93212 1.00980 1.19822 0.98109 0.95779 0.94330 1.20886 0.98882 0.95124 0.98438 1.20966 1.01949 0.94523 0.98552 1.20987 0.98693 0.99378 0.94699 1.21338 0.98655 0.94926 0.99184 1.18717 0.93850 0.92374 0.92772 1.17594 0.96449 0.98477 1.01870 1.20306 0.93328 0.97908 0.95742 1.20572 1.01584 0.97648 1.03666 1.17748 0.91410 0.91383 0.92533 1.19393 0.90697 1.30604 1.05676 0.88832 1.26145 0.97057 0.92349 0.98060 1.69612 1.06704 1.34889 1.32209 0.86386 0.78067 0.78688 0.83372 1.19587 1.22002 1.15455 1.17384 0.98191 0.86916 0.99813 1.91322 1.90492 1.49429 1.82462 1.20242 0.98219 0.95775 0.96965 0.93094 0.91201 0.92815 0.90799 0.95138 0.90715 0.91024 0.92383 0.92582 0.92666 0.89173 0.94679 0.87033 0.86981 0.86773 0.86165 0.88438 0.87480 0.90274 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.04 37.16 0.37 -1.78 16 2 C 0.05 0.73 5.59 -3.82 -0.02 0.71 16 3 N -0.51 -7.68 4.52 -236.07 -1.07 -8.74 16 4 C 0.05 0.63 5.64 -3.82 -0.02 0.61 16 5 C -0.19 -2.04 9.14 37.16 0.34 -1.71 16 6 C 0.09 1.33 4.00 -4.97 -0.02 1.31 16 7 C -0.08 -1.19 4.25 -104.23 -0.44 -1.63 16 8 C -0.11 -1.47 9.06 -39.64 -0.36 -1.83 16 9 C -0.14 -1.72 10.04 -39.48 -0.40 -2.12 16 10 C -0.12 -1.53 10.03 -39.64 -0.40 -1.93 16 11 C -0.12 -1.84 9.62 -39.19 -0.38 -2.22 16 12 C 0.02 0.39 5.39 -104.88 -0.57 -0.18 16 13 C -0.14 -2.75 4.81 -104.65 -0.50 -3.25 16 14 C -0.05 -1.11 9.53 -39.65 -0.38 -1.49 16 15 C -0.22 -4.91 6.85 -39.29 -0.27 -5.18 16 16 C 0.07 1.81 5.07 -106.74 -0.54 1.27 16 17 C -0.44 -11.74 9.24 -37.90 -0.35 -12.10 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.08 2.14 5.50 -17.32 -0.10 2.04 16 20 N -0.81 -21.51 13.93 55.55 0.77 -20.73 16 21 Si 0.91 20.29 24.42 -169.99 -4.15 16.14 16 22 H -0.27 -5.83 6.66 56.52 0.38 -5.45 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.23 -5.21 6.11 56.52 0.35 -4.87 16 25 C 0.00 -0.07 7.26 -39.07 -0.28 -0.35 16 26 F -0.16 -3.82 16.82 2.25 0.04 -3.78 16 27 C -0.09 -1.90 7.86 -39.61 -0.31 -2.21 16 28 H 0.05 0.67 6.48 -51.93 -0.34 0.34 16 29 H 0.07 1.22 7.61 -51.93 -0.40 0.83 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16 32 H 0.03 0.38 6.05 -51.93 -0.31 0.07 16 33 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 34 H 0.07 0.91 6.38 -51.93 -0.33 0.58 16 35 H 0.06 0.61 4.97 -51.93 -0.26 0.35 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.59 6.21 -51.93 -0.32 0.26 16 38 H 0.09 1.45 4.91 -51.93 -0.25 1.20 16 39 H 0.04 0.45 5.98 -51.93 -0.31 0.14 16 40 H 0.11 1.23 6.69 -52.49 -0.35 0.88 16 41 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.11 2.44 4.62 -52.49 -0.24 2.19 16 46 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 47 H 0.10 1.93 6.92 -52.49 -0.36 1.57 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -26.82 365.12 -9.96 -36.78 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.43 Total: 6.87 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -4.62 Total: -32.03 kcal Atomic # 7 Polarization: -29.18 SS G_CDS: -0.29 Total: -29.47 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.15 Total: 16.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.82 -9.96 -36.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243338607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.427 kcal (2) G-P(sol) polarization free energy of solvation -26.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds