Wall clock time and date at job start Tue Mar 31 2020 15:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 C 1.50696 * 109.47406 * 240.00397 * 2 1 3 5 5 C 1.38235 * 120.00250 * 59.72096 * 4 2 1 6 6 C 1.38239 * 119.99803 * 179.76602 * 5 4 2 7 7 C 1.38234 * 119.99910 * 0.51620 * 6 5 4 8 8 C 1.50700 * 119.99693 * 179.72533 * 7 6 5 9 9 C 1.52999 * 109.46803 * 270.01621 * 8 7 6 10 10 N 1.46900 * 109.47248 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99651 * 293.94872 * 10 9 8 12 12 C 1.50699 * 109.47497 * 300.01061 * 11 10 9 13 13 H 1.07998 * 119.99725 * 354.94046 * 12 11 10 14 14 C 1.37875 * 119.99957 * 174.94417 * 12 11 10 15 15 N 1.31513 * 119.99811 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46821 * 59.99902 * 16 14 12 18 18 H 1.48500 * 109.47316 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47176 * 300.00330 * 16 14 12 20 20 C 1.46898 * 111.00460 * 170.00120 * 10 9 8 21 21 C 1.50699 * 109.47334 * 195.74000 * 20 10 9 22 22 C 1.34513 * 125.79285 * 89.71534 * 21 20 10 23 23 C 1.41383 * 106.84094 * 179.88918 * 22 21 20 24 24 C 1.34508 * 106.83883 * 0.37042 * 23 22 21 25 25 O 1.34299 * 125.78632 * 270.02076 * 21 20 10 26 26 C 1.38233 * 120.00139 * 359.73641 * 7 6 5 27 27 C 1.38234 * 119.99605 * 240.00318 * 4 2 1 28 28 H 1.09005 * 109.46989 * 60.00089 * 1 2 3 29 29 H 1.09003 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47079 * 300.00301 * 1 2 3 31 31 H 1.08995 * 109.47113 * 119.99904 * 2 1 3 32 32 H 1.08995 * 109.47169 * 299.99870 * 3 2 1 33 33 H 1.09004 * 109.46826 * 59.99738 * 3 2 1 34 34 H 1.08998 * 109.46887 * 179.97438 * 3 2 1 35 35 H 1.07999 * 119.99736 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.99427 * 180.22767 * 6 5 4 37 37 H 1.09000 * 109.47477 * 30.01167 * 8 7 6 38 38 H 1.08995 * 109.47181 * 150.01679 * 8 7 6 39 39 H 1.09003 * 109.47231 * 300.00085 * 9 8 7 40 40 H 1.08999 * 109.47667 * 60.00055 * 9 8 7 41 41 H 1.09004 * 109.46654 * 60.01044 * 11 10 9 42 42 H 1.09000 * 109.47121 * 180.02562 * 11 10 9 43 43 H 0.97002 * 119.99460 * 180.02562 * 15 14 12 44 44 H 1.09008 * 109.46891 * 315.73657 * 20 10 9 45 45 H 1.09000 * 109.47351 * 75.73057 * 20 10 9 46 46 H 1.08004 * 126.57700 * 0.02562 * 22 21 20 47 47 H 1.07995 * 126.57494 * 180.15883 * 23 22 21 48 48 H 1.08006 * 125.78740 * 179.75437 * 24 23 22 49 49 H 1.07997 * 120.00333 * 179.97438 * 26 7 6 50 50 H 1.08001 * 120.00114 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 1.6938 -0.2414 -2.4860 6 6 2.1587 -0.8902 -3.6147 7 6 2.9534 -2.0141 -3.4878 8 6 3.4550 -2.7249 -4.7182 9 6 2.4467 -3.7979 -5.1340 10 7 2.9359 -4.4914 -6.3331 11 6 2.9754 -3.5831 -7.4870 12 6 1.5891 -3.0604 -7.7627 13 1 0.7488 -3.4335 -7.1960 14 6 1.3935 -2.1060 -8.7383 15 7 2.4169 -1.6515 -9.4280 16 14 -0.3250 -1.4587 -9.0804 17 1 -0.8717 -0.8316 -7.8503 18 1 -0.2661 -0.4477 -10.1666 19 1 -1.2034 -2.5817 -9.4958 20 6 2.1204 -5.6778 -6.6247 21 6 2.8543 -6.5653 -7.5967 22 6 3.7090 -7.5515 -7.2706 23 6 4.1598 -8.1207 -8.4837 24 6 3.5598 -7.4430 -9.4787 25 8 2.7702 -6.5021 -8.9356 26 6 3.2877 -2.4861 -2.2323 27 6 2.8271 -1.8342 -1.1036 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.0695 0.6343 -2.5850 36 1 1.8971 -0.5216 -4.5956 37 1 3.5760 -2.0065 -5.5290 38 1 4.4151 -3.1931 -4.5013 39 1 2.3256 -4.5164 -4.3232 40 1 1.4866 -3.3298 -5.3509 41 1 3.6419 -2.7484 -7.2697 42 1 3.3407 -4.1220 -8.3612 43 1 2.2793 -0.9798 -10.1142 44 1 1.9338 -6.2264 -5.7014 45 1 1.1709 -5.3678 -7.0613 46 1 3.9944 -7.8522 -6.2733 47 1 4.8552 -8.9399 -8.5909 48 1 3.6911 -7.6244 -10.5353 49 1 3.9082 -3.3644 -2.1331 50 1 3.0883 -2.2030 -0.1226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000469098708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:00 Heat of formation + Delta-G solvation = 23.746775 kcal Electronic energy + Delta-G solvation = -27431.874551 eV Core-core repulsion = 23810.903001 eV Total energy + Delta-G solvation = -3620.971550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94407 -39.51629 -37.20804 -35.56251 -32.62056 -32.45289 -31.91891 -30.67221 -29.78382 -27.64901 -27.25474 -26.67644 -24.45055 -23.57406 -22.59283 -21.73702 -21.13472 -20.18408 -19.67282 -19.43332 -16.95959 -16.28697 -16.15656 -15.74450 -15.33424 -15.03133 -14.81331 -14.18223 -14.16487 -14.05435 -13.81280 -13.60949 -13.46948 -13.17597 -12.81053 -12.49587 -12.38554 -12.26246 -12.23206 -12.14085 -11.92849 -11.58104 -11.40565 -11.21395 -11.10596 -11.05226 -10.88159 -10.77400 -10.59155 -10.45527 -10.30480 -10.11117 -9.99744 -9.59453 -9.36780 -8.65836 -8.42294 -8.21901 -7.92752 -7.25133 -6.02633 -4.10793 1.58931 1.66580 2.32212 3.12912 3.27545 3.32995 3.35158 3.63360 3.99184 4.40115 4.64589 4.75690 4.96917 5.10441 5.19054 5.23765 5.28365 5.31770 5.37389 5.48262 5.49311 5.52114 5.54380 5.62056 5.70367 5.71019 5.79484 5.86511 5.90856 5.91806 6.03628 6.11591 6.13949 6.20256 6.23683 6.29899 6.31647 6.41035 6.47076 6.65984 6.67441 6.71539 6.81282 6.82484 7.04017 7.09119 7.22995 7.29178 7.53804 7.76915 7.90227 7.99289 8.19552 8.26495 8.97057 9.54967 11.02919 Molecular weight = 327.19amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.003249 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.499434 B = 8617.255914 C =10472.713461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.115 4.115 6 C -0.108 4.108 7 C -0.068 4.068 8 C -0.076 4.076 9 C 0.073 3.927 10 N -0.539 5.539 11 C 0.184 3.816 12 C -0.547 4.547 13 H 0.055 0.945 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.884 3.116 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.130 3.870 21 C 0.031 3.969 22 C -0.219 4.219 23 C -0.222 4.222 24 C -0.053 4.053 25 O -0.161 6.161 26 C -0.118 4.118 27 C -0.121 4.121 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.193 0.807 49 H 0.119 0.881 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -2.273 14.485 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.092 4.092 5 C -0.133 4.133 6 C -0.127 4.127 7 C -0.068 4.068 8 C -0.113 4.113 9 C -0.055 4.055 10 N -0.263 5.263 11 C 0.059 3.941 12 C -0.586 4.586 13 H 0.073 0.927 14 C -0.133 4.133 15 N -0.526 5.526 16 Si 0.712 3.288 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C 0.002 3.998 21 C -0.020 4.020 22 C -0.239 4.239 23 C -0.241 4.241 24 C -0.121 4.121 25 O -0.055 6.055 26 C -0.136 4.136 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.210 0.790 49 H 0.137 0.863 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.795 -2.083 14.269 14.443 hybrid contribution -1.527 0.498 -0.588 1.710 sum -0.732 -1.585 13.681 13.792 Atomic orbital electron populations 1.21860 0.94585 1.01982 1.01710 1.20076 0.95771 0.95886 0.95508 1.21856 1.01196 0.95333 1.01708 1.19743 0.98778 0.96294 0.94390 1.20920 1.00359 1.00030 0.91959 1.21220 0.97108 0.95456 0.98867 1.20032 0.96661 0.95172 0.94974 1.20582 0.98518 0.97914 0.94337 1.21813 0.97241 0.94796 0.91635 1.62555 1.49655 1.07697 1.06391 1.19837 0.96157 0.90974 0.87181 1.21591 0.94337 1.23035 1.19610 0.92688 1.24885 0.96416 0.96268 0.95773 1.69932 1.29897 1.29736 1.23065 0.86790 0.85289 0.78783 0.77986 1.20255 1.21214 1.20273 1.20394 0.94931 0.90760 0.93691 1.22471 1.00467 0.98096 0.81014 1.21412 1.02675 1.00761 0.99092 1.21693 1.05527 1.04171 0.92688 1.23898 0.96918 0.92209 0.99112 1.84176 1.53953 1.46955 1.20435 1.21035 1.00641 0.99887 0.91994 1.20939 0.98892 0.95916 0.98183 0.92402 0.92560 0.92714 0.90868 0.92411 0.92720 0.92596 0.86647 0.85607 0.89751 0.91239 0.93069 0.93288 0.94323 0.95132 0.92802 0.89955 0.91840 0.84176 0.84300 0.78993 0.86313 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.00 37.16 0.33 -1.00 16 2 C -0.05 -0.53 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 4 C -0.09 -1.14 4.78 -104.63 -0.50 -1.64 16 5 C -0.11 -1.57 8.71 -39.58 -0.34 -1.92 16 6 C -0.11 -1.72 9.70 -39.58 -0.38 -2.10 16 7 C -0.07 -1.07 5.13 -104.63 -0.54 -1.60 16 8 C -0.08 -1.33 5.27 -27.88 -0.15 -1.47 16 9 C 0.07 1.36 4.72 -3.82 -0.02 1.34 16 10 N -0.54 -11.17 4.66 -237.51 -1.11 -12.28 16 11 C 0.18 4.62 4.75 -4.97 -0.02 4.59 16 12 C -0.55 -14.55 7.33 -34.44 -0.25 -14.80 16 13 H 0.06 1.45 5.96 -52.49 -0.31 1.13 16 14 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 16 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.13 2.51 5.36 -4.98 -0.03 2.48 16 21 C 0.03 0.60 6.11 -35.63 -0.22 0.38 16 22 C -0.22 -3.74 10.81 -39.70 -0.43 -4.17 16 23 C -0.22 -3.46 10.91 -39.70 -0.43 -3.89 16 24 C -0.05 -0.87 12.09 29.41 0.36 -0.52 16 25 O -0.16 -3.32 10.05 5.72 0.06 -3.27 16 26 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 27 C -0.12 -1.52 9.67 -39.58 -0.38 -1.90 16 28 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 32 H 0.06 0.54 7.40 -51.93 -0.38 0.15 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.12 1.42 7.10 -52.49 -0.37 1.04 16 36 H 0.13 2.12 8.06 -52.48 -0.42 1.69 16 37 H 0.08 1.70 6.50 -51.93 -0.34 1.36 16 38 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 39 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 40 H 0.05 1.01 6.39 -51.93 -0.33 0.68 16 41 H 0.04 1.04 6.47 -51.93 -0.34 0.70 16 42 H 0.03 0.86 6.90 -51.93 -0.36 0.50 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.33 7.81 -51.92 -0.41 0.92 16 45 H 0.06 1.34 6.37 -51.93 -0.33 1.01 16 46 H 0.14 2.09 8.06 -52.48 -0.42 1.66 16 47 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 48 H 0.19 2.40 8.06 -52.48 -0.42 1.98 16 49 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 50 H 0.11 1.17 7.95 -52.49 -0.42 0.75 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -29.79 401.69 -10.87 -40.65 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.15 Total: 5.86 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -3.44 Total: -28.17 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.37 Total: -37.31 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.06 Total: -3.27 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.79 -10.87 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000469098708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.398 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds