Wall clock time and date at job start Tue Mar 31 2020 15:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47455 * 2 1 4 4 C 1.50701 * 109.47190 * 239.99762 * 2 1 3 5 5 H 1.08003 * 119.99881 * 240.00159 * 4 2 1 6 6 C 1.37877 * 119.99837 * 59.99977 * 4 2 1 7 7 N 1.31517 * 120.00085 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99835 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46798 * 60.00452 * 8 6 4 10 10 H 1.48507 * 109.46813 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47213 * 300.00332 * 8 6 4 12 12 C 1.53004 * 109.47220 * 119.99996 * 2 1 3 13 13 N 1.46501 * 109.46694 * 300.00024 * 12 2 1 14 14 C 1.34774 * 119.99615 * 180.02562 * 13 12 2 15 15 O 1.21581 * 120.00437 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99913 * 180.02562 * 14 13 12 17 17 C 1.46505 * 120.00232 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47346 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.46916 * 299.99739 * 18 17 16 20 20 C 1.52999 * 109.47144 * 179.97438 * 18 17 16 21 21 N 1.46908 * 109.46960 * 59.99418 * 18 17 16 22 22 C 1.47024 * 110.99261 * 56.32346 * 21 18 17 23 23 C 1.53103 * 109.24985 * 182.34870 * 22 21 18 24 24 O 1.43012 * 109.29295 * 303.21723 * 23 22 21 25 25 C 1.43011 * 113.74271 * 58.65008 * 24 23 22 26 26 C 1.47018 * 110.99661 * 179.97438 * 21 18 17 27 27 H 1.09000 * 109.47554 * 300.00486 * 1 2 3 28 28 H 1.09002 * 109.46986 * 59.99986 * 1 2 3 29 29 H 1.08995 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47515 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47035 * 299.99984 * 3 2 1 32 32 H 1.09000 * 109.47137 * 59.99258 * 3 2 1 33 33 H 0.97001 * 119.99770 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47236 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.46995 * 59.99459 * 12 2 1 36 36 H 0.97004 * 120.00507 * 359.97438 * 13 12 2 37 37 H 0.97004 * 120.00208 * 359.97438 * 16 14 13 38 38 H 1.09002 * 109.47276 * 59.99116 * 17 16 14 39 39 H 1.09007 * 109.46790 * 299.99432 * 17 16 14 40 40 H 1.09006 * 109.47064 * 179.97438 * 19 18 17 41 41 H 1.08994 * 109.47203 * 299.99730 * 19 18 17 42 42 H 1.09001 * 109.47488 * 60.00431 * 19 18 17 43 43 H 1.09007 * 109.46559 * 300.00001 * 20 18 17 44 44 H 1.08994 * 109.47311 * 60.00064 * 20 18 17 45 45 H 1.09003 * 109.47109 * 180.02562 * 20 18 17 46 46 H 1.08998 * 109.47369 * 62.43595 * 22 21 18 47 47 H 1.08998 * 109.54483 * 302.29802 * 22 21 18 48 48 H 1.09002 * 109.50635 * 183.25881 * 23 22 21 49 49 H 1.09003 * 109.50698 * 63.17493 * 23 22 21 50 50 H 1.08997 * 109.50806 * 61.26171 * 25 24 23 51 51 H 1.08997 * 109.50924 * 181.35636 * 25 24 23 52 52 H 1.08994 * 109.50209 * 57.67478 * 26 21 18 53 53 H 1.08997 * 109.50514 * 297.54292 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0076 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5766 -1.4792 3.7811 16 7 1.4279 0.1443 4.7699 17 6 1.7827 -0.3555 6.1006 18 6 1.1493 0.5399 7.1673 19 6 1.6669 1.9705 7.0053 20 6 1.5194 0.0175 8.5570 21 7 -0.3116 0.5272 7.0129 22 6 -0.8359 -0.8449 7.0757 23 6 -2.3503 -0.8173 6.8522 24 8 -2.9558 0.0397 7.8240 25 6 -2.4686 1.3838 7.7895 26 6 -0.9556 1.3783 8.0239 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7095 1.1617 -3.4844 34 1 3.1299 -0.7209 1.2495 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.8699 0.9328 4.6809 38 1 2.8667 -0.3457 6.2153 39 1 1.4144 -1.3749 6.2159 40 1 1.2152 2.6085 7.7650 41 1 2.7507 1.9800 7.1199 42 1 1.4028 2.3425 6.0153 43 1 1.1503 -1.0017 8.6721 44 1 2.6032 0.0266 8.6718 45 1 1.0677 0.6551 9.3170 46 1 -0.6202 -1.2719 8.0551 47 1 -0.3649 -1.4511 6.3019 48 1 -2.7519 -1.8254 6.9553 49 1 -2.5638 -0.4410 5.8517 50 1 -2.6848 1.8245 6.8163 51 1 -2.9562 1.9679 8.5700 52 1 -0.5712 2.3949 7.9422 53 1 -0.7425 0.9867 9.0185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457446708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:06 Heat of formation + Delta-G solvation = -70.024809 kcal Electronic energy + Delta-G solvation = -29887.000920 eV Core-core repulsion = 25986.946960 eV Total energy + Delta-G solvation = -3900.053960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 327.231 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63274 -39.34485 -37.68924 -36.32987 -34.02589 -33.17546 -32.14894 -31.53808 -30.64755 -27.79166 -26.95867 -26.60453 -25.67913 -25.39529 -24.43834 -23.67610 -21.38776 -20.46740 -19.32966 -18.71626 -18.02034 -17.05111 -16.45897 -15.85494 -15.75861 -15.43122 -15.31268 -15.00366 -14.95507 -14.74464 -14.48939 -14.23847 -13.84107 -13.40431 -13.29875 -12.99967 -12.80287 -12.71022 -12.42673 -12.18615 -12.14676 -12.12681 -11.94717 -11.61436 -11.38611 -11.31959 -11.15182 -10.82851 -10.78673 -10.73403 -10.69746 -10.33679 -10.17726 -9.94390 -9.71106 -9.58276 -9.26094 -8.86083 -8.75644 -8.65217 -8.37216 -8.09753 -5.98833 -4.08682 3.14134 3.32344 3.36361 3.38958 3.42226 3.61548 3.74876 4.29663 4.41518 4.50287 4.62346 4.70979 4.72925 4.82013 4.90043 4.93272 5.00674 5.16419 5.27328 5.27814 5.33479 5.34744 5.42270 5.48665 5.51447 5.55869 5.62530 5.67114 5.77936 5.81062 5.97318 6.27308 6.42022 6.55627 6.63060 6.64756 6.80051 6.85869 6.87173 6.87873 6.96963 7.08008 7.17385 7.38916 7.51683 7.60416 7.73218 8.05482 8.16835 8.42688 8.59260 8.91209 9.14717 9.56862 11.02517 Molecular weight = 327.23amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.002598 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.059879 B =10776.901136 C =11319.860864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.152 3.848 13 N -0.733 5.733 14 C 0.696 3.304 15 O -0.605 6.605 16 N -0.743 5.743 17 C 0.155 3.845 18 C 0.094 3.906 19 C -0.140 4.140 20 C -0.179 4.179 21 N -0.521 5.521 22 C 0.012 3.988 23 C 0.064 3.936 24 O -0.388 6.388 25 C 0.063 3.937 26 C 0.012 3.988 27 H 0.006 0.994 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.393 0.607 37 H 0.399 0.601 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.089 0.911 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 4.067 22.946 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.396 3.604 15 O -0.485 6.485 16 N -0.400 5.400 17 C 0.029 3.971 18 C 0.004 3.996 19 C -0.198 4.198 20 C -0.238 4.238 21 N -0.246 5.246 22 C -0.116 4.116 23 C -0.013 4.013 24 O -0.306 6.306 25 C -0.014 4.014 26 C -0.116 4.116 27 H 0.025 0.975 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.228 0.772 37 H 0.234 0.766 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.113 0.887 52 H 0.107 0.893 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.467 3.386 22.522 23.209 hybrid contribution 0.272 0.002 -0.282 0.392 sum -4.194 3.388 22.239 22.883 Atomic orbital electron populations 1.21805 0.97785 0.99092 0.99964 1.18346 0.92773 0.92735 0.90546 1.21812 0.98517 0.98395 0.99963 1.20966 1.31442 1.12091 0.89934 0.92494 1.24874 0.94882 0.94930 0.98801 1.69799 1.36726 1.22743 1.23257 0.86640 0.79234 0.79805 0.82212 1.20286 1.21363 1.20304 1.21547 0.97758 0.95353 0.82501 1.45478 1.55647 1.33032 1.04593 1.16090 0.80539 0.82989 0.80767 1.90872 1.43453 1.27940 1.86220 1.44965 1.57211 1.33646 1.04186 1.21119 0.99039 0.96500 0.80405 1.21372 0.87300 0.96782 0.94141 1.21893 1.01064 0.94113 1.02692 1.22403 1.02788 1.01712 0.96876 1.62406 1.03815 1.10116 1.48303 1.22899 0.96476 0.90514 1.01739 1.22670 0.91168 0.94897 0.92533 1.87975 1.64256 1.20699 1.57682 1.22657 0.92432 0.84041 1.02234 1.22883 0.95591 0.98944 0.94134 0.97525 0.89729 0.95527 0.95518 0.89706 0.97548 0.93002 0.93110 0.93105 0.77248 0.76644 0.91445 0.91894 0.92295 0.91649 0.91419 0.92035 0.91377 0.91834 0.93645 0.88845 0.88530 0.92020 0.92172 0.88713 0.89287 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 13 N -0.73 -13.35 4.96 -65.23 -0.32 -13.68 16 14 C 0.70 12.46 8.57 -86.92 -0.74 11.72 16 15 O -0.61 -13.25 16.34 5.29 0.09 -13.16 16 16 N -0.74 -9.71 5.13 -65.22 -0.33 -10.05 16 17 C 0.15 1.75 4.11 -4.04 -0.02 1.73 16 18 C 0.09 0.77 0.37 -131.60 -0.05 0.73 16 19 C -0.14 -1.05 8.07 37.16 0.30 -0.75 16 20 C -0.18 -1.29 7.78 37.16 0.29 -1.00 16 21 N -0.52 -4.40 4.23 -218.64 -0.92 -5.33 16 22 C 0.01 0.11 4.87 -3.70 -0.02 0.09 16 23 C 0.06 0.59 7.01 37.21 0.26 0.85 16 24 O -0.39 -3.93 10.83 -35.23 -0.38 -4.31 16 25 C 0.06 0.49 7.01 37.21 0.26 0.75 16 26 C 0.01 0.09 4.87 -3.71 -0.02 0.07 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.39 6.49 6.18 -40.82 -0.25 6.24 16 37 H 0.40 4.58 7.17 -40.82 -0.29 4.28 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.77 6.30 -51.92 -0.33 0.45 16 40 H 0.06 0.37 6.35 -51.93 -0.33 0.04 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.56 6.86 -51.93 -0.36 0.20 16 43 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.42 6.46 -51.93 -0.34 0.08 16 46 H 0.05 0.41 6.52 -51.93 -0.34 0.07 16 47 H 0.09 0.97 6.11 -51.93 -0.32 0.65 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.09 0.55 6.19 -51.93 -0.32 0.23 16 53 H 0.05 0.34 6.44 -51.93 -0.33 0.01 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -29.71 391.26 -9.16 -38.87 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -9.08 Total: 7.67 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 0.40 Total: 1.47 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -1.06 Total: -52.28 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.29 Total: -17.48 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.71 -9.16 -38.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457446708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.151 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds