Wall clock time and date at job start Tue Mar 31 2020 15:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47505 * 1.17892 * 3 2 1 5 5 N 1.46899 * 109.47473 * 185.88507 * 4 3 2 6 6 C 1.46906 * 110.99589 * 291.15241 * 5 4 3 7 7 C 1.50699 * 109.46844 * 75.03733 * 6 5 4 8 8 H 1.07996 * 120.00721 * 5.21802 * 7 6 5 9 9 C 1.37885 * 119.99690 * 185.22405 * 7 6 5 10 10 N 1.31516 * 119.99792 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99728 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47516 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47091 * 120.00056 * 11 9 7 14 14 H 1.48500 * 109.46903 * 239.99477 * 11 9 7 15 15 C 1.46897 * 111.00407 * 167.20038 * 5 4 3 16 16 C 1.50706 * 109.46713 * 299.51967 * 15 5 4 17 17 C 1.33399 * 122.54028 * 267.09671 * 16 15 5 18 18 S 1.75878 * 109.60426 * 180.02562 * 17 16 15 19 19 C 1.75889 * 90.97866 * 0.02562 * 18 17 16 20 20 C 1.33424 * 109.59711 * 0.02562 * 19 18 17 21 21 Br 1.89104 * 122.54940 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.46930 * 241.17691 * 3 2 1 23 23 H 1.09005 * 109.47027 * 121.17609 * 3 2 1 24 24 H 1.09001 * 109.47409 * 65.88054 * 4 3 2 25 25 H 1.09003 * 109.46890 * 305.88201 * 4 3 2 26 26 H 1.08998 * 109.46856 * 195.03029 * 6 5 4 27 27 H 1.08996 * 109.47048 * 315.03716 * 6 5 4 28 28 H 0.96995 * 119.99729 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.46972 * 179.52132 * 15 5 4 30 30 H 1.09000 * 109.47222 * 59.51583 * 15 5 4 31 31 H 1.08001 * 125.19496 * 359.75962 * 17 16 15 32 32 H 1.08004 * 125.20079 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4412 -0.0297 5 7 4.5809 -1.4459 0.1122 6 6 5.2273 -0.8835 -1.0810 7 6 5.0686 0.6151 -1.0790 8 1 4.6153 1.1091 -0.2323 9 6 5.5022 1.3557 -2.1582 10 7 6.0546 0.7543 -3.1891 11 14 5.3048 3.2133 -2.1560 12 1 4.6584 3.6409 -0.8895 13 1 6.6400 3.8530 -2.2714 14 1 4.4589 3.6225 -3.3058 15 6 5.0784 -2.7995 0.3918 16 6 4.4760 -3.3000 1.6794 17 6 5.0802 -3.1520 2.8595 18 16 4.0834 -3.8572 4.1254 19 6 2.8662 -4.3283 2.9463 20 6 3.2544 -3.9503 1.7270 21 35 2.2141 -4.2754 0.1817 22 1 2.9711 0.4963 0.9004 23 1 2.9711 0.5328 -0.8793 24 1 2.8442 -1.9046 -0.9773 25 1 2.6722 -2.0018 0.7916 26 1 6.2875 -1.1366 -1.0732 27 1 4.7616 -1.2970 -1.9755 28 1 6.3599 1.2753 -3.9482 29 1 6.1642 -2.7757 0.4838 30 1 4.7973 -3.4656 -0.4238 31 1 6.0373 -2.6760 3.0134 32 1 1.9458 -4.8452 3.1743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348144192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:11 Heat of formation + Delta-G solvation = 77.087844 kcal Electronic energy + Delta-G solvation = -17725.894391 eV Core-core repulsion = 14860.203025 eV Total energy + Delta-G solvation = -2865.691367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 327.994 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.02017 -36.76503 -35.60695 -32.64680 -31.73873 -30.64363 -29.30950 -27.46140 -25.27414 -23.57155 -22.39385 -20.24592 -18.56482 -17.86204 -17.18365 -15.98899 -15.33802 -15.24024 -14.58800 -14.22196 -13.96823 -13.47131 -13.08224 -12.92617 -12.85791 -12.51243 -12.13042 -12.04198 -11.89752 -11.42392 -11.27200 -11.03557 -10.91058 -10.68183 -10.55279 -10.51706 -10.23995 -10.06660 -9.52729 -9.23005 -8.76123 -8.49672 -8.38060 -7.38481 -6.11771 -4.12172 0.84251 1.11522 1.72639 2.28152 2.43884 3.26214 3.28884 3.34975 3.36174 3.38258 4.33995 4.54533 4.75623 5.08931 5.21190 5.27336 5.37817 5.58234 5.74223 5.75669 5.92611 5.99373 6.19729 6.25541 6.40574 6.59029 6.84104 7.10205 7.26448 7.70956 7.96496 8.03940 8.12963 8.40284 8.94045 9.50357 10.98064 Molecular weight = 327.99amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004969 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.237349 B = 5633.491116 C = 6156.173516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.222 3.778 3 C -0.042 4.042 4 C 0.070 3.930 5 N -0.526 5.526 6 C 0.188 3.812 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.058 3.942 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.107 3.893 16 C -0.074 4.074 17 C -0.183 4.183 18 S 0.117 5.883 19 C -0.190 4.190 20 C -0.093 4.093 21 Br -0.024 7.024 22 H 0.107 0.893 23 H 0.148 0.852 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.003 0.997 28 H 0.262 0.738 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.175 0.825 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -11.982 11.282 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.095 4.095 3 C -0.081 4.081 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.063 3.937 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.144 4.144 10 N -0.531 5.531 11 Si 0.717 3.283 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.023 4.023 16 C -0.087 4.087 17 C -0.320 4.320 18 S 0.380 5.620 19 C -0.328 4.328 20 C -0.186 4.186 21 Br 0.060 6.940 22 H 0.125 0.875 23 H 0.165 0.835 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.192 0.808 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.518 -11.918 12.514 17.862 hybrid contribution 0.296 0.743 -1.952 2.110 sum -4.222 -11.175 10.562 15.945 Atomic orbital electron populations 1.81083 1.13467 1.09908 1.10904 1.29921 0.95857 0.92022 0.91699 1.20115 0.79028 1.00725 1.08280 1.22159 0.89727 0.94118 0.99969 1.62187 1.03728 1.16913 1.42215 1.19863 0.94210 0.95124 0.84505 1.21332 1.39643 0.91185 1.02932 0.90713 1.24995 0.95273 0.98565 0.95566 1.69957 1.40433 1.35664 1.07060 0.86567 0.77951 0.85541 0.78235 1.19331 1.20991 1.21081 1.20821 0.99475 0.91151 0.90873 1.18761 0.93268 0.99279 0.97367 1.25447 1.05141 1.07168 0.94226 1.84226 1.12120 1.55048 1.10621 1.25582 1.04670 1.07694 0.94872 1.20829 0.97744 1.07037 0.93005 1.96717 1.68291 1.94726 1.34311 0.87454 0.83516 0.94394 0.91777 0.95355 0.97918 0.92850 0.89640 0.93844 0.80811 0.81229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.26 18.54 42.15 0.78 -8.48 16 2 C 0.22 3.99 15.43 -20.76 -0.32 3.67 16 3 C -0.04 -0.73 4.34 -29.52 -0.13 -0.86 16 4 C 0.07 1.23 3.32 -3.83 -0.01 1.22 16 5 N -0.53 -9.73 4.54 -237.51 -1.08 -10.81 16 6 C 0.19 4.24 4.74 -4.97 -0.02 4.22 16 7 C -0.51 -12.39 6.65 -34.44 -0.23 -12.62 16 8 H 0.07 1.73 5.92 -52.49 -0.31 1.42 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 11 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.11 1.71 4.97 -4.97 -0.02 1.68 16 16 C -0.07 -1.03 4.71 -106.23 -0.50 -1.53 16 17 C -0.18 -2.20 10.97 29.04 0.32 -1.88 16 18 S 0.12 1.19 23.34 -107.50 -2.51 -1.32 16 19 C -0.19 -2.15 11.05 29.05 0.32 -1.83 16 20 C -0.09 -1.24 4.91 -41.18 -0.20 -1.44 16 21 Br -0.02 -0.33 29.09 -68.01 -1.98 -2.31 16 22 H 0.11 1.78 7.77 -51.93 -0.40 1.37 16 23 H 0.15 2.88 5.44 -51.93 -0.28 2.60 16 24 H 0.04 0.70 7.19 -51.93 -0.37 0.33 16 25 H 0.06 1.06 4.24 -51.93 -0.22 0.84 16 26 H 0.03 0.68 7.83 -51.93 -0.41 0.28 16 27 H 0.00 0.07 7.84 -51.93 -0.41 -0.33 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 29 H 0.09 1.31 7.93 -51.93 -0.41 0.89 16 30 H 0.04 0.71 7.28 -51.93 -0.38 0.33 16 31 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -27.25 302.07 -8.59 -35.84 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.17 Total: -0.68 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.90 Total: -7.98 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.44 Total: -43.00 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -1.98 Total: -2.31 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.25 -8.59 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348144192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.931 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds