Wall clock time and date at job start Tue Mar 31 2020 15:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47505 * 1.17892 * 3 2 1 5 5 N 1.46899 * 109.47473 * 185.88507 * 4 3 2 6 6 C 1.46906 * 110.99589 * 291.15241 * 5 4 3 7 7 C 1.50699 * 109.46844 * 75.03733 * 6 5 4 8 8 H 1.07996 * 120.00721 * 5.21802 * 7 6 5 9 9 C 1.37885 * 119.99690 * 185.22405 * 7 6 5 10 10 N 1.31516 * 119.99792 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99728 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47516 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47091 * 120.00056 * 11 9 7 14 14 H 1.48500 * 109.46903 * 239.99477 * 11 9 7 15 15 C 1.46897 * 111.00407 * 167.20038 * 5 4 3 16 16 C 1.50706 * 109.46713 * 299.51967 * 15 5 4 17 17 C 1.33399 * 122.54028 * 267.09671 * 16 15 5 18 18 S 1.75878 * 109.60426 * 180.02562 * 17 16 15 19 19 C 1.75889 * 90.97866 * 0.02562 * 18 17 16 20 20 C 1.33424 * 109.59711 * 0.02562 * 19 18 17 21 21 Br 1.89104 * 122.54940 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.46930 * 241.17691 * 3 2 1 23 23 H 1.09005 * 109.47027 * 121.17609 * 3 2 1 24 24 H 1.09001 * 109.47409 * 65.88054 * 4 3 2 25 25 H 1.09003 * 109.46890 * 305.88201 * 4 3 2 26 26 H 1.08998 * 109.46856 * 195.03029 * 6 5 4 27 27 H 1.08996 * 109.47048 * 315.03716 * 6 5 4 28 28 H 0.96995 * 119.99729 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.46972 * 179.52132 * 15 5 4 30 30 H 1.09000 * 109.47222 * 59.51583 * 15 5 4 31 31 H 1.08001 * 125.19496 * 359.75962 * 17 16 15 32 32 H 1.08004 * 125.20079 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4412 -0.0297 5 7 4.5809 -1.4459 0.1122 6 6 5.2273 -0.8835 -1.0810 7 6 5.0686 0.6151 -1.0790 8 1 4.6153 1.1091 -0.2323 9 6 5.5022 1.3557 -2.1582 10 7 6.0546 0.7543 -3.1891 11 14 5.3048 3.2133 -2.1560 12 1 4.6584 3.6409 -0.8895 13 1 6.6400 3.8530 -2.2714 14 1 4.4589 3.6225 -3.3058 15 6 5.0784 -2.7995 0.3918 16 6 4.4760 -3.3000 1.6794 17 6 5.0802 -3.1520 2.8595 18 16 4.0834 -3.8572 4.1254 19 6 2.8662 -4.3283 2.9463 20 6 3.2544 -3.9503 1.7270 21 35 2.2141 -4.2754 0.1817 22 1 2.9711 0.4963 0.9004 23 1 2.9711 0.5328 -0.8793 24 1 2.8442 -1.9046 -0.9773 25 1 2.6722 -2.0018 0.7916 26 1 6.2875 -1.1366 -1.0732 27 1 4.7616 -1.2970 -1.9755 28 1 6.3599 1.2753 -3.9482 29 1 6.1642 -2.7757 0.4838 30 1 4.7973 -3.4656 -0.4238 31 1 6.0373 -2.6760 3.0134 32 1 1.9458 -4.8452 3.1743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348144192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:10 Heat of formation + Delta-G solvation = 61.991882 kcal Electronic energy + Delta-G solvation = -17726.549001 eV Core-core repulsion = 14860.203025 eV Total energy + Delta-G solvation = -2866.345977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 327.994 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18652 -38.14808 -37.09776 -34.52207 -32.90852 -31.88482 -30.56919 -29.02061 -26.61947 -25.03525 -23.76687 -21.73214 -19.65664 -19.10858 -18.41911 -17.64548 -16.79063 -16.54679 -16.24905 -15.61926 -15.38357 -14.81812 -14.29605 -14.10707 -14.05275 -13.97991 -13.77469 -13.38852 -13.19878 -12.94469 -12.89023 -12.47799 -12.41375 -12.17795 -11.98939 -11.76358 -11.70690 -11.30503 -11.11936 -10.83259 -10.45143 -9.71656 -9.31771 -8.92172 -8.07443 -6.12404 -0.07377 0.19663 0.80973 1.35181 1.40353 1.49105 1.53895 1.63017 1.81990 1.87363 2.49803 3.05510 3.27636 3.67126 3.87673 4.09168 4.30498 4.33332 4.47065 4.58696 4.73368 4.79182 4.80882 5.10494 5.17131 5.23474 5.38687 5.39490 5.43561 5.81792 6.18192 6.37353 6.62023 6.67898 7.02353 7.54041 9.02918 Molecular weight = 327.99amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004969 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.237349 B = 5633.491116 C = 6156.173516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.239 3.761 3 C -0.033 4.033 4 C 0.076 3.924 5 N -0.522 5.522 6 C 0.202 3.798 7 C -0.506 4.506 8 H 0.088 0.912 9 C 0.007 3.993 10 N -0.934 5.934 11 Si 0.948 3.052 12 H -0.252 1.252 13 H -0.287 1.287 14 H -0.290 1.290 15 C 0.109 3.891 16 C -0.095 4.095 17 C -0.187 4.187 18 S 0.184 5.816 19 C -0.189 4.189 20 C -0.115 4.115 21 Br -0.040 7.040 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.025 0.975 25 H 0.080 0.920 26 H 0.008 0.992 27 H -0.027 1.027 28 H 0.260 0.740 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.187 0.813 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 -11.843 13.901 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.077 4.077 3 C -0.073 4.073 4 C -0.054 4.054 5 N -0.246 5.246 6 C 0.076 3.924 7 C -0.545 4.545 8 H 0.106 0.894 9 C -0.191 4.191 10 N -0.575 5.575 11 Si 0.774 3.226 12 H -0.176 1.176 13 H -0.213 1.213 14 H -0.217 1.217 15 C -0.021 4.021 16 C -0.107 4.107 17 C -0.325 4.325 18 S 0.447 5.553 19 C -0.327 4.327 20 C -0.207 4.207 21 Br 0.043 6.957 22 H 0.142 0.858 23 H 0.146 0.854 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.026 0.974 27 H -0.010 1.010 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.204 0.796 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.995 -11.788 15.169 19.849 hybrid contribution 0.455 0.594 -2.634 2.738 sum -4.539 -11.193 12.535 17.407 Atomic orbital electron populations 1.81103 1.14060 1.10667 1.11659 1.29834 0.95626 0.91290 0.90966 1.19993 0.78692 1.00583 1.08052 1.22135 0.89091 0.94212 0.99965 1.62113 1.04108 1.18852 1.39521 1.19535 0.93029 0.94794 0.85047 1.21694 1.38045 0.91936 1.02780 0.89407 1.25739 0.95408 1.02492 0.95475 1.70086 1.42358 1.37139 1.07909 0.85642 0.77526 0.80881 0.78552 1.17557 1.21348 1.21651 1.20779 0.99724 0.89463 0.92182 1.18541 0.94191 1.01208 0.96797 1.25716 1.05766 1.06365 0.94605 1.84075 1.09986 1.52969 1.08258 1.25936 1.05621 1.06559 0.94619 1.20808 0.97888 1.08798 0.93221 1.96701 1.68559 1.94856 1.35565 0.85766 0.85424 0.95715 0.90163 0.97391 1.00955 0.93141 0.89481 0.94744 0.79617 0.79289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.70 18.54 20.01 0.37 -18.33 16 2 C 0.24 8.29 15.43 89.44 1.38 9.67 16 3 C -0.03 -1.12 4.34 28.79 0.12 -1.00 16 4 C 0.08 2.61 3.32 86.30 0.29 2.90 16 5 N -0.52 -19.19 4.54 -905.36 -4.11 -23.31 16 6 C 0.20 9.32 4.74 85.56 0.41 9.73 16 7 C -0.51 -24.42 6.65 25.60 0.17 -24.25 16 8 H 0.09 3.93 5.92 -2.91 -0.02 3.92 16 9 C 0.01 0.36 5.46 84.66 0.46 0.82 16 10 N -0.93 -52.39 13.29 21.45 0.28 -52.10 16 11 Si 0.95 40.69 29.54 68.60 2.03 42.72 16 12 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 13 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.11 3.44 4.97 85.56 0.43 3.87 16 16 C -0.09 -2.50 4.71 -20.90 -0.10 -2.60 16 17 C -0.19 -4.02 10.97 66.72 0.73 -3.29 16 18 S 0.18 3.07 23.34 -56.49 -1.32 1.75 16 19 C -0.19 -3.73 11.05 66.73 0.74 -2.99 16 20 C -0.11 -2.86 4.91 21.23 0.10 -2.75 16 21 Br -0.04 -1.10 29.09 -20.37 -0.59 -1.69 16 22 H 0.12 3.81 7.77 -2.39 -0.02 3.79 16 23 H 0.13 4.94 5.44 -2.38 -0.01 4.93 16 24 H 0.02 0.92 7.19 -2.39 -0.02 0.91 16 25 H 0.08 2.56 4.24 -2.39 -0.01 2.55 16 26 H 0.01 0.40 7.83 -2.39 -0.02 0.38 16 27 H -0.03 -1.42 7.84 -2.39 -0.02 -1.44 16 28 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.09 2.67 7.93 -2.39 -0.02 2.65 16 30 H 0.03 1.15 7.28 -2.39 -0.02 1.13 16 31 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -58.04 302.07 2.54 -55.50 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.15 Total: 5.34 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.73 Total: -9.88 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -3.46 Total: -93.73 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.75 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -0.59 Total: -1.69 kcal Total: -58.04 2.54 -55.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348144192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.492 kcal (2) G-P(sol) polarization free energy of solvation -58.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds