Wall clock time and date at job start Tue Mar 31 2020 15:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86798 * 120.00306 * 2 1 4 4 H 1.48493 * 109.47174 * 269.99733 * 3 2 1 5 5 H 1.48501 * 109.46950 * 30.00379 * 3 2 1 6 6 H 1.48506 * 109.47047 * 149.99910 * 3 2 1 7 7 C 1.38755 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00245 * 180.02562 * 7 2 1 9 9 O 1.34768 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00068 * 185.05654 * 9 7 2 11 11 C 1.39157 * 119.92225 * 354.44909 * 10 9 7 12 12 C 1.37635 * 120.08006 * 180.02562 * 11 10 9 13 13 C 1.39819 * 119.91902 * 359.97001 * 12 11 10 14 14 C 1.47653 * 120.07520 * 179.97438 * 13 12 11 15 15 O 1.21780 * 120.00405 * 0.02562 * 14 13 12 16 16 C 1.46220 * 120.00075 * 179.97438 * 14 13 12 17 17 C 1.35092 * 120.00472 * 180.02562 * 16 14 13 18 18 C 1.47048 * 120.00093 * 180.02562 * 17 16 14 19 19 C 1.39933 * 120.18404 * 0.02565 * 18 17 16 20 20 C 1.37817 * 119.82895 * 179.97438 * 19 18 17 21 21 C 1.38478 * 120.21814 * 0.02562 * 20 19 18 22 22 C 1.38334 * 120.37441 * 359.97438 * 21 20 19 23 23 C 1.38070 * 120.16163 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.10496 * 179.97438 * 23 22 21 25 25 C 1.39815 * 119.84485 * 0.26275 * 13 12 11 26 26 C 1.37641 * 119.92062 * 359.50528 * 25 13 12 27 27 H 0.97008 * 119.99642 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.96299 * 0.02562 * 11 10 9 29 29 H 1.08001 * 120.04292 * 179.97438 * 12 11 10 30 30 H 1.08007 * 119.99574 * 0.02562 * 16 14 13 31 31 H 1.07997 * 119.99414 * 0.02562 * 17 16 14 32 32 H 1.07995 * 120.08825 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.89300 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.81615 * 180.27971 * 21 20 19 35 35 H 1.07994 * 119.92187 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.03712 * 179.72265 * 25 13 12 37 37 H 1.07992 * 119.95741 * 180.23950 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4964 2.0463 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5464 1.4400 0.7001 7 6 2.0085 -1.2017 0.0005 8 1 3.0885 -1.2018 0.0010 9 8 1.3346 -2.3688 0.0005 10 6 2.0688 -3.5034 0.1075 11 6 3.4586 -3.4347 0.0944 12 6 4.2072 -4.5846 0.2023 13 6 3.5695 -5.8228 0.3258 14 6 4.3692 -7.0587 0.4412 15 8 5.5855 -7.0003 0.4293 16 6 3.7007 -8.3526 0.5709 17 6 4.4323 -9.4833 0.6770 18 6 3.7599 -10.7846 0.8069 19 6 2.3624 -10.8562 0.8204 20 6 1.7399 -12.0798 0.9419 21 6 2.4926 -13.2370 1.0511 22 6 3.8745 -13.1763 1.0386 23 6 4.5144 -11.9589 0.9166 24 17 6.2487 -11.8844 0.9018 25 6 2.1729 -5.8885 0.3338 26 6 1.4307 -4.7340 0.2303 27 1 -0.4850 0.8401 0.0004 28 1 3.9505 -2.4779 -0.0006 29 1 5.2858 -4.5307 0.1916 30 1 2.6219 -8.4043 0.5819 31 1 5.5109 -9.4315 0.6665 32 1 1.7733 -9.9551 0.7359 33 1 0.6614 -12.1363 0.9521 34 1 1.9980 -14.1927 1.1414 35 1 4.4544 -14.0834 1.1238 36 1 1.6772 -6.8437 0.4245 37 1 0.3520 -4.7837 0.2402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006432261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:09 Heat of formation + Delta-G solvation = -5.429015 kcal Electronic energy + Delta-G solvation = -22740.565330 eV Core-core repulsion = 19053.819841 eV Total energy + Delta-G solvation = -3686.745488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86314 -39.41072 -38.51939 -36.76860 -36.25248 -34.31603 -32.55969 -31.17104 -30.69677 -30.11766 -29.08150 -25.74882 -24.86603 -23.22808 -22.46079 -22.02045 -20.58194 -18.97466 -18.06756 -17.86179 -17.19718 -16.30161 -15.88359 -15.45104 -14.99555 -14.64913 -14.27546 -14.22030 -14.20417 -14.00239 -13.93711 -13.66547 -13.52952 -12.95911 -12.74679 -12.38548 -12.11391 -11.89436 -11.86860 -11.65032 -11.44514 -11.40524 -11.06787 -10.95424 -10.75097 -10.60237 -10.56413 -9.56178 -9.35735 -9.23374 -9.04371 -8.52741 -8.39390 -7.44325 -6.69067 -4.24113 0.12727 0.82051 1.33279 1.78886 2.06927 2.14741 3.01042 3.03524 3.08637 3.25092 3.54727 3.80061 4.10721 4.33781 4.50528 4.52953 4.67366 4.87525 4.88606 4.93386 4.99867 5.09726 5.23466 5.47604 5.51967 5.58923 5.66789 5.72633 5.80315 5.99843 6.01632 6.11467 6.30683 6.33870 6.39539 6.46339 6.72503 6.87898 6.96564 7.19931 7.22764 7.60225 7.76790 8.02119 8.75769 9.41505 10.47249 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.002060 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.714874 B =13588.672486 C =14575.513162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.394 4.394 8 H 0.099 0.901 9 O -0.158 6.158 10 C 0.175 3.825 11 C -0.249 4.249 12 C -0.007 4.007 13 C -0.269 4.269 14 C 0.426 3.574 15 O -0.485 6.485 16 C -0.196 4.196 17 C -0.055 4.055 18 C -0.055 4.055 19 C -0.093 4.093 20 C -0.115 4.115 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.022 4.022 24 Cl -0.060 7.060 25 C -0.028 4.028 26 C -0.205 4.205 27 H 0.275 0.725 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -22.788 1.943 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.059 6.059 10 C 0.118 3.882 11 C -0.268 4.268 12 C -0.026 4.026 13 C -0.271 4.271 14 C 0.312 3.688 15 O -0.367 6.367 16 C -0.214 4.214 17 C -0.073 4.073 18 C -0.056 4.056 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.049 4.049 24 Cl -0.031 7.031 25 C -0.047 4.047 26 C -0.224 4.224 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.083 -22.492 1.913 22.939 hybrid contribution 0.431 0.797 -0.015 0.906 sum 4.515 -21.695 1.898 22.241 Atomic orbital electron populations 1.70001 1.06183 1.28384 1.43624 1.25418 0.95916 0.99212 0.95869 0.85634 0.79057 0.79386 0.79008 1.19569 1.20000 1.18866 1.21521 0.92203 0.80480 1.52691 0.88398 1.83892 1.35091 1.11873 1.75015 1.19644 0.90344 0.87861 0.90364 1.21122 0.93587 0.99147 1.12980 1.20916 0.99185 0.90978 0.91523 1.19657 0.93789 0.93791 1.19893 1.20199 0.88051 0.88329 0.72219 1.90593 1.16073 1.89477 1.40571 1.23750 1.01203 0.93809 1.02650 1.22488 1.00853 0.90092 0.93903 1.18942 0.93145 0.92136 1.01376 1.21499 0.92748 0.98863 0.98033 1.21234 1.00647 0.92158 0.99249 1.21260 0.92985 0.99043 0.98931 1.21015 0.94951 0.96303 1.00859 1.21197 0.84888 0.94557 1.04239 1.98387 1.09416 1.98623 1.96711 1.20822 0.92367 0.96969 0.94506 1.20149 0.99803 0.90081 1.12352 0.91508 0.84984 0.86305 0.84982 0.84331 0.84285 0.84922 0.84939 0.84711 0.86345 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.53 13.67 55.48 0.76 -22.77 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.95 19.45 29.55 -169.99 -5.02 14.43 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.39 -10.41 9.48 30.92 0.29 -10.11 16 8 H 0.10 2.39 5.18 -52.48 -0.27 2.12 16 9 O -0.16 -4.26 9.74 0.79 0.01 -4.25 16 10 C 0.18 4.01 6.66 -38.90 -0.26 3.75 16 11 C -0.25 -5.29 9.15 -39.46 -0.36 -5.65 16 12 C -0.01 -0.14 9.59 -39.21 -0.38 -0.52 16 13 C -0.27 -4.84 5.88 -104.87 -0.62 -5.46 16 14 C 0.43 7.14 7.06 -32.54 -0.23 6.91 16 15 O -0.49 -9.30 16.23 5.12 0.08 -9.21 16 16 C -0.20 -2.54 8.90 -37.50 -0.33 -2.88 16 17 C -0.05 -0.68 9.07 -37.13 -0.34 -1.02 16 18 C -0.06 -0.58 5.87 -105.03 -0.62 -1.20 16 19 C -0.09 -0.81 9.41 -39.10 -0.37 -1.18 16 20 C -0.11 -0.80 10.03 -39.65 -0.40 -1.20 16 21 C -0.10 -0.68 10.04 -39.46 -0.40 -1.08 16 22 C -0.11 -0.87 9.82 -39.61 -0.39 -1.26 16 23 C -0.02 -0.22 6.36 -38.98 -0.25 -0.47 16 24 Cl -0.06 -0.62 27.44 -51.86 -1.42 -2.04 16 25 C -0.03 -0.47 9.44 -39.21 -0.37 -0.84 16 26 C -0.20 -4.00 9.97 -39.46 -0.39 -4.39 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.13 2.77 5.62 -52.48 -0.29 2.48 16 29 H 0.12 2.17 7.64 -52.49 -0.40 1.77 16 30 H 0.13 1.36 4.33 -52.48 -0.23 1.13 16 31 H 0.14 1.87 6.44 -52.49 -0.34 1.53 16 32 H 0.14 1.01 6.17 -52.49 -0.32 0.68 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 1.49 6.21 -52.49 -0.33 1.16 16 37 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -30.39 342.31 -8.94 -39.33 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.01 Total: 4.93 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -5.49 Total: -25.58 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.76 Total: -22.77 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.39 -8.94 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006432261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.900 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds