Wall clock time and date at job start Tue Mar 31 2020 15:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86798 * 120.00306 * 2 1 4 4 H 1.48493 * 109.47174 * 269.99733 * 3 2 1 5 5 H 1.48501 * 109.46950 * 30.00379 * 3 2 1 6 6 H 1.48506 * 109.47047 * 149.99910 * 3 2 1 7 7 C 1.38755 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00245 * 180.02562 * 7 2 1 9 9 O 1.34768 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00068 * 185.05654 * 9 7 2 11 11 C 1.39157 * 119.92225 * 354.44909 * 10 9 7 12 12 C 1.37635 * 120.08006 * 180.02562 * 11 10 9 13 13 C 1.39819 * 119.91902 * 359.97001 * 12 11 10 14 14 C 1.47653 * 120.07520 * 179.97438 * 13 12 11 15 15 O 1.21780 * 120.00405 * 0.02562 * 14 13 12 16 16 C 1.46220 * 120.00075 * 179.97438 * 14 13 12 17 17 C 1.35092 * 120.00472 * 180.02562 * 16 14 13 18 18 C 1.47048 * 120.00093 * 180.02562 * 17 16 14 19 19 C 1.39933 * 120.18404 * 0.02565 * 18 17 16 20 20 C 1.37817 * 119.82895 * 179.97438 * 19 18 17 21 21 C 1.38478 * 120.21814 * 0.02562 * 20 19 18 22 22 C 1.38334 * 120.37441 * 359.97438 * 21 20 19 23 23 C 1.38070 * 120.16163 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.10496 * 179.97438 * 23 22 21 25 25 C 1.39815 * 119.84485 * 0.26275 * 13 12 11 26 26 C 1.37641 * 119.92062 * 359.50528 * 25 13 12 27 27 H 0.97008 * 119.99642 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.96299 * 0.02562 * 11 10 9 29 29 H 1.08001 * 120.04292 * 179.97438 * 12 11 10 30 30 H 1.08007 * 119.99574 * 0.02562 * 16 14 13 31 31 H 1.07997 * 119.99414 * 0.02562 * 17 16 14 32 32 H 1.07995 * 120.08825 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.89300 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.81615 * 180.27971 * 21 20 19 35 35 H 1.07994 * 119.92187 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.03712 * 179.72265 * 25 13 12 37 37 H 1.07992 * 119.95741 * 180.23950 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4964 2.0463 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5464 1.4400 0.7001 7 6 2.0085 -1.2017 0.0005 8 1 3.0885 -1.2018 0.0010 9 8 1.3346 -2.3688 0.0005 10 6 2.0688 -3.5034 0.1075 11 6 3.4586 -3.4347 0.0944 12 6 4.2072 -4.5846 0.2023 13 6 3.5695 -5.8228 0.3258 14 6 4.3692 -7.0587 0.4412 15 8 5.5855 -7.0003 0.4293 16 6 3.7007 -8.3526 0.5709 17 6 4.4323 -9.4833 0.6770 18 6 3.7599 -10.7846 0.8069 19 6 2.3624 -10.8562 0.8204 20 6 1.7399 -12.0798 0.9419 21 6 2.4926 -13.2370 1.0511 22 6 3.8745 -13.1763 1.0386 23 6 4.5144 -11.9589 0.9166 24 17 6.2487 -11.8844 0.9018 25 6 2.1729 -5.8885 0.3338 26 6 1.4307 -4.7340 0.2303 27 1 -0.4850 0.8401 0.0004 28 1 3.9505 -2.4779 -0.0006 29 1 5.2858 -4.5307 0.1916 30 1 2.6219 -8.4043 0.5819 31 1 5.5109 -9.4315 0.6665 32 1 1.7733 -9.9551 0.7359 33 1 0.6614 -12.1363 0.9521 34 1 1.9980 -14.1927 1.1414 35 1 4.4544 -14.0834 1.1238 36 1 1.6772 -6.8437 0.4245 37 1 0.3520 -4.7837 0.2402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006432261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:08 Heat of formation + Delta-G solvation = -20.581604 kcal Electronic energy + Delta-G solvation = -22741.222395 eV Core-core repulsion = 19053.819841 eV Total energy + Delta-G solvation = -3687.402554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16761 -40.45354 -39.93669 -37.88706 -37.49140 -35.21529 -34.41472 -32.10553 -31.76227 -31.54539 -30.23918 -27.57251 -25.97710 -24.12899 -23.63330 -23.34173 -21.76183 -20.37263 -19.58419 -19.11188 -18.38282 -17.40853 -16.99776 -16.47409 -16.22041 -16.16307 -15.76909 -15.62981 -15.36846 -15.31832 -14.81893 -14.64222 -14.57279 -14.50661 -14.22919 -13.61969 -13.33668 -13.24949 -13.04039 -12.72947 -12.60016 -12.54272 -12.41460 -12.15301 -12.07442 -11.78862 -11.43881 -11.29394 -10.87866 -10.76806 -9.94777 -9.84654 -9.35583 -9.10951 -8.56247 -6.22786 -0.79166 0.07786 0.23918 0.54571 0.99393 1.08737 1.35217 1.42870 1.51911 2.07427 2.13314 2.73038 2.84827 3.03435 3.13896 3.36355 3.68757 3.75875 3.94260 3.99221 4.05371 4.23069 4.29405 4.35313 4.41752 4.46757 4.60825 4.66761 4.86741 4.91548 4.92642 5.04185 5.14653 5.22297 5.31373 5.39655 5.44839 5.48970 5.57063 5.61387 5.81934 5.92758 6.01748 6.66048 6.88052 7.61615 8.65147 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.002060 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.714874 B =13588.672486 C =14575.513162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.014 4.014 3 Si 1.017 2.983 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.420 4.420 8 H 0.104 0.896 9 O -0.209 6.209 10 C 0.147 3.853 11 C -0.257 4.257 12 C -0.018 4.018 13 C -0.258 4.258 14 C 0.431 3.569 15 O -0.514 6.514 16 C -0.214 4.214 17 C -0.031 4.031 18 C -0.085 4.085 19 C -0.093 4.093 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.035 4.035 24 Cl -0.075 7.075 25 C -0.007 4.007 26 C -0.209 4.209 27 H 0.277 0.723 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.166 0.834 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.174 0.826 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 -26.496 2.352 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.213 4.213 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.496 4.496 8 H 0.122 0.878 9 O -0.113 6.113 10 C 0.094 3.906 11 C -0.276 4.276 12 C -0.036 4.036 13 C -0.260 4.260 14 C 0.318 3.682 15 O -0.398 6.398 16 C -0.232 4.232 17 C -0.050 4.050 18 C -0.086 4.086 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.061 4.061 24 Cl -0.046 7.046 25 C -0.024 4.024 26 C -0.228 4.228 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.139 0.861 32 H 0.173 0.827 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.191 0.809 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.716 -26.256 2.324 26.620 hybrid contribution 0.720 1.296 -0.096 1.486 sum 4.436 -24.960 2.229 25.449 Atomic orbital electron populations 1.70119 1.07952 1.29306 1.46933 1.26588 0.96842 1.02669 0.95243 0.84604 0.77863 0.74535 0.79389 1.18687 1.19292 1.17873 1.21902 0.92722 0.81184 1.53766 0.87849 1.83881 1.36134 1.12716 1.78593 1.20233 0.91165 0.88287 0.90948 1.21161 0.93386 0.99674 1.13371 1.21090 0.99663 0.91191 0.91679 1.20116 0.94893 0.93958 1.17032 1.20491 0.87520 0.89308 0.70868 1.90596 1.17430 1.89943 1.41787 1.23554 1.02509 0.91519 1.05658 1.22543 1.00223 0.91226 0.90965 1.18932 0.94231 0.91145 1.04294 1.21779 0.91839 1.00425 0.97079 1.21634 1.02232 0.91483 0.97939 1.21719 0.92399 1.00504 0.96304 1.21314 0.95906 0.96087 1.00505 1.21430 0.84307 0.95430 1.04953 1.98383 1.10703 1.98675 1.96816 1.21312 0.91544 0.98185 0.91402 1.20510 1.00855 0.89677 1.11753 0.91372 0.85742 0.85568 0.81701 0.86085 0.82695 0.82036 0.81787 0.83123 0.80903 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.99 13.67 21.63 0.30 -52.69 16 2 C -0.01 -0.74 5.49 84.87 0.47 -0.28 16 3 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.42 -23.49 9.48 67.94 0.64 -22.84 16 8 H 0.10 5.36 5.18 -2.91 -0.02 5.34 16 9 O -0.21 -11.89 9.74 -20.08 -0.20 -12.09 16 10 C 0.15 6.94 6.66 22.71 0.15 7.09 16 11 C -0.26 -11.24 9.15 22.35 0.20 -11.04 16 12 C -0.02 -0.69 9.59 22.51 0.22 -0.47 16 13 C -0.26 -8.78 5.88 -20.03 -0.12 -8.90 16 14 C 0.43 13.55 7.06 26.83 0.19 13.74 16 15 O -0.51 -19.26 16.23 -4.60 -0.07 -19.34 16 16 C -0.21 -4.89 8.90 23.62 0.21 -4.68 16 17 C -0.03 -0.70 9.07 23.86 0.22 -0.48 16 18 C -0.09 -1.56 5.87 -20.13 -0.12 -1.67 16 19 C -0.09 -1.21 9.41 22.58 0.21 -1.00 16 20 C -0.12 -1.02 10.03 22.23 0.22 -0.79 16 21 C -0.09 -0.76 10.04 22.35 0.22 -0.53 16 22 C -0.12 -1.45 9.82 22.25 0.22 -1.23 16 23 C -0.03 -0.60 6.36 22.66 0.14 -0.46 16 24 Cl -0.07 -1.45 27.44 -2.72 -0.07 -1.52 16 25 C -0.01 -0.20 9.44 22.51 0.21 0.01 16 26 C -0.21 -7.96 9.97 22.35 0.22 -7.74 16 27 H 0.28 14.77 8.31 -92.70 -0.77 13.99 16 28 H 0.12 5.53 5.62 -2.91 -0.02 5.51 16 29 H 0.13 4.63 7.64 -2.91 -0.02 4.61 16 30 H 0.17 2.54 4.33 -2.91 -0.01 2.53 16 31 H 0.12 3.16 6.44 -2.91 -0.02 3.14 16 32 H 0.16 1.41 6.17 -2.91 -0.02 1.39 16 33 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 34 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.17 3.33 6.21 -2.91 -0.02 3.31 16 37 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -71.79 342.31 6.63 -65.16 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.14 Total: 18.46 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.52 Total: -41.27 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.30 Total: -52.69 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.27 Total: -31.43 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -71.79 6.63 -65.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006432261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.575 kcal (2) G-P(sol) polarization free energy of solvation -71.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds