Wall clock time and date at job start Tue Mar 31 2020 15:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86794 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47150 * 269.99787 * 3 2 1 5 5 H 1.48502 * 109.47601 * 30.00176 * 3 2 1 6 6 H 1.48503 * 109.46916 * 150.00236 * 3 2 1 7 7 C 1.38756 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99989 * 359.97438 * 7 2 1 9 9 O 1.34769 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.35561 * 116.99485 * 185.05661 * 9 7 2 11 11 C 1.39165 * 119.92729 * 354.44543 * 10 9 7 12 12 C 1.37631 * 120.08107 * 180.02562 * 11 10 9 13 13 C 1.39813 * 119.91951 * 0.02562 * 12 11 10 14 14 C 1.47651 * 120.07787 * 180.02562 * 13 12 11 15 15 O 1.21765 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.46263 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.35049 * 119.99932 * 179.97438 * 16 14 13 18 18 C 1.47119 * 120.00142 * 180.02562 * 17 16 14 19 19 C 1.39913 * 120.16585 * 0.20246 * 18 17 16 20 20 C 1.37854 * 119.84537 * 180.27998 * 19 18 17 21 21 C 1.38416 * 120.19140 * 359.74923 * 20 19 18 22 22 C 1.38512 * 120.34429 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.92995 * 179.97438 * 22 21 20 24 24 C 1.38017 * 120.14303 * 359.97438 * 22 21 20 25 25 C 1.39828 * 119.84721 * 0.27324 * 13 12 11 26 26 C 1.37634 * 119.91585 * 359.44661 * 25 13 12 27 27 H 0.97005 * 119.99779 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.95464 * 0.02562 * 11 10 9 29 29 H 1.07993 * 120.03946 * 179.97438 * 12 11 10 30 30 H 1.07995 * 120.00204 * 0.02562 * 16 14 13 31 31 H 1.08005 * 119.99854 * 0.02562 * 17 16 14 32 32 H 1.08003 * 120.08266 * 0.02562 * 19 18 17 33 33 H 1.08002 * 119.90936 * 179.73309 * 20 19 18 34 34 H 1.08002 * 119.83153 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.09388 * 179.97438 * 24 22 21 36 36 H 1.07994 * 120.03977 * 179.72428 * 25 13 12 37 37 H 1.07997 * 119.95748 * 180.25836 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4964 2.0463 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4400 0.7000 7 6 2.0086 -1.2017 -0.0005 8 1 1.4686 -2.1370 -0.0005 9 8 3.3563 -1.2017 -0.0011 10 6 3.9716 -2.4049 -0.1080 11 6 3.2171 -3.5742 -0.0943 12 6 3.8386 -4.7974 -0.2021 13 6 5.2297 -4.8645 -0.3251 14 6 5.8999 -6.1749 -0.4416 15 8 5.2411 -7.1989 -0.4312 16 6 7.3553 -6.2431 -0.5708 17 6 7.9684 -7.4417 -0.6768 18 6 9.4323 -7.5103 -0.8061 19 6 10.1931 -6.3361 -0.8154 20 6 11.5638 -6.4078 -0.9427 21 6 12.1890 -7.6376 -1.0561 22 6 11.4439 -8.8052 -1.0431 23 17 12.2391 -10.3416 -1.1867 24 6 10.0707 -8.7497 -0.9164 25 6 5.9852 -3.6879 -0.3323 26 6 5.3565 -2.4678 -0.2298 27 1 -0.4850 0.8401 0.0004 28 1 2.1426 -3.5215 0.0012 29 1 3.2525 -5.7044 -0.1910 30 1 7.9396 -5.3349 -0.5805 31 1 7.3840 -8.3499 -0.6667 32 1 9.7072 -5.3756 -0.7271 33 1 12.1517 -5.5019 -0.9543 34 1 13.2633 -7.6870 -1.1551 35 1 9.4906 -9.6606 -0.9068 36 1 7.0603 -3.7363 -0.4226 37 1 5.9390 -1.5585 -0.2395 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008321683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:31 Heat of formation + Delta-G solvation = -4.838034 kcal Electronic energy + Delta-G solvation = -22551.171536 eV Core-core repulsion = 18864.451674 eV Total energy + Delta-G solvation = -3686.719861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93939 -39.53734 -38.68779 -36.92277 -36.41617 -34.24276 -32.65892 -31.41463 -30.71907 -30.25420 -29.26248 -25.82169 -24.84256 -23.21448 -22.54895 -22.11964 -20.64573 -19.00916 -18.01092 -17.92713 -17.39780 -16.36523 -15.89357 -15.73334 -15.12679 -14.74896 -14.33268 -14.24361 -14.14851 -14.03762 -13.89733 -13.83339 -13.66829 -13.01964 -12.64776 -12.48487 -12.30055 -12.13380 -12.05767 -11.83006 -11.57822 -11.47173 -11.27661 -10.92592 -10.84887 -10.54903 -10.31596 -9.64961 -9.44658 -9.27327 -9.08649 -8.62868 -8.50098 -7.60295 -6.64898 -4.29171 0.08620 0.76369 1.22806 1.69155 1.95705 2.02431 3.07134 3.12272 3.18287 3.25830 3.47377 4.04634 4.05446 4.32639 4.40804 4.52806 4.53887 4.63438 4.73440 4.89041 4.90564 4.95382 5.24998 5.33072 5.43509 5.46769 5.60940 5.65997 5.74643 5.88861 5.92607 5.99981 6.23876 6.28213 6.29191 6.33253 6.59616 6.79441 6.94494 7.10446 7.36572 7.59047 7.79068 7.91395 8.67722 9.26919 10.40975 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.001872 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.741888 B =14952.174980 C =15829.572257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.112 0.888 9 O -0.198 6.198 10 C 0.182 3.818 11 C -0.237 4.237 12 C -0.009 4.009 13 C -0.262 4.262 14 C 0.427 3.573 15 O -0.483 6.483 16 C -0.200 4.200 17 C -0.048 4.048 18 C -0.052 4.052 19 C -0.101 4.101 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.036 4.036 23 Cl -0.070 7.070 24 C -0.093 4.093 25 C -0.029 4.029 26 C -0.205 4.205 27 H 0.284 0.716 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.813 -12.528 -1.926 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.129 0.871 9 O -0.100 6.100 10 C 0.127 3.873 11 C -0.256 4.256 12 C -0.028 4.028 13 C -0.264 4.264 14 C 0.312 3.688 15 O -0.365 6.365 16 C -0.218 4.218 17 C -0.066 4.066 18 C -0.052 4.052 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.063 4.063 23 Cl -0.041 7.041 24 C -0.111 4.111 25 C -0.048 4.048 26 C -0.225 4.225 27 H 0.095 0.905 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 22.388 -12.779 -1.905 25.848 hybrid contribution 0.229 0.662 -0.015 0.701 sum 22.617 -12.116 -1.920 25.730 Atomic orbital electron populations 1.69609 1.05745 1.29103 1.45348 1.24566 0.95098 0.99159 0.95086 0.86149 0.80386 0.81007 0.79244 1.19571 1.20452 1.18153 1.20917 0.76552 0.97023 1.52263 0.87061 1.83494 1.23089 1.26277 1.77138 1.19403 0.91805 0.85313 0.90791 1.21243 1.01468 0.91550 1.11357 1.20969 0.93091 0.97229 0.91495 1.19731 0.94426 0.93305 1.18912 1.20216 0.87929 0.88477 0.72163 1.90598 1.68113 1.37420 1.40331 1.23730 0.96526 0.98529 1.03034 1.22417 0.91480 0.99138 0.93611 1.19021 0.93204 0.92641 1.00374 1.21619 0.93946 0.98414 0.97867 1.21094 0.94586 0.97429 0.99322 1.21209 1.00474 0.90925 0.99948 1.20827 0.92897 0.87105 1.05439 1.98382 1.80174 1.29198 1.96376 1.21286 0.92471 0.98230 0.99149 1.20830 0.98385 0.90997 0.94558 1.20150 0.91811 0.98024 1.12465 0.90550 0.84361 0.86033 0.84954 0.84607 0.84548 0.84588 0.84817 0.84387 0.86146 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.96 55.48 0.77 -22.77 16 2 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 20.24 28.62 -169.99 -4.86 15.37 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.40 9.94 30.92 0.31 -10.10 16 8 H 0.11 3.02 5.42 -52.49 -0.28 2.73 16 9 O -0.20 -4.85 8.57 0.80 0.01 -4.85 16 10 C 0.18 3.92 6.66 -38.89 -0.26 3.66 16 11 C -0.24 -4.91 9.15 -39.46 -0.36 -5.27 16 12 C -0.01 -0.17 9.58 -39.21 -0.38 -0.55 16 13 C -0.26 -4.41 5.88 -104.87 -0.62 -5.03 16 14 C 0.43 6.61 7.06 -32.52 -0.23 6.38 16 15 O -0.48 -8.68 16.23 5.13 0.08 -8.59 16 16 C -0.20 -2.31 8.90 -37.49 -0.33 -2.64 16 17 C -0.05 -0.50 9.46 -37.11 -0.35 -0.86 16 18 C -0.05 -0.47 5.87 -105.06 -0.62 -1.09 16 19 C -0.10 -0.78 9.41 -39.10 -0.37 -1.15 16 20 C -0.11 -0.71 10.03 -39.66 -0.40 -1.10 16 21 C -0.11 -0.76 9.82 -39.42 -0.39 -1.14 16 22 C -0.04 -0.30 6.31 -39.56 -0.25 -0.55 16 23 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.06 16 24 C -0.09 -0.80 9.58 -39.06 -0.37 -1.17 16 25 C -0.03 -0.45 9.44 -39.21 -0.37 -0.82 16 26 C -0.21 -3.66 9.97 -39.46 -0.39 -4.06 16 27 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.14 2.99 5.62 -52.48 -0.29 2.69 16 29 H 0.12 2.15 7.64 -52.49 -0.40 1.75 16 30 H 0.13 1.19 4.33 -52.49 -0.23 0.97 16 31 H 0.14 1.46 7.52 -52.48 -0.39 1.06 16 32 H 0.14 0.86 6.17 -52.48 -0.32 0.54 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.34 6.21 -52.49 -0.33 1.02 16 37 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -28.99 343.67 -8.87 -37.86 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.08 Total: 3.66 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -5.47 Total: -23.80 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.77 Total: -22.77 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.86 Total: 15.37 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.99 -8.87 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008321683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.023 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds