Wall clock time and date at job start Tue Mar 31 2020 15:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86794 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47150 * 269.99787 * 3 2 1 5 5 H 1.48502 * 109.47601 * 30.00176 * 3 2 1 6 6 H 1.48503 * 109.46916 * 150.00236 * 3 2 1 7 7 C 1.38756 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99989 * 359.97438 * 7 2 1 9 9 O 1.34769 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.35561 * 116.99485 * 185.05661 * 9 7 2 11 11 C 1.39165 * 119.92729 * 354.44543 * 10 9 7 12 12 C 1.37631 * 120.08107 * 180.02562 * 11 10 9 13 13 C 1.39813 * 119.91951 * 0.02562 * 12 11 10 14 14 C 1.47651 * 120.07787 * 180.02562 * 13 12 11 15 15 O 1.21765 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.46263 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.35049 * 119.99932 * 179.97438 * 16 14 13 18 18 C 1.47119 * 120.00142 * 180.02562 * 17 16 14 19 19 C 1.39913 * 120.16585 * 0.20246 * 18 17 16 20 20 C 1.37854 * 119.84537 * 180.27998 * 19 18 17 21 21 C 1.38416 * 120.19140 * 359.74923 * 20 19 18 22 22 C 1.38512 * 120.34429 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.92995 * 179.97438 * 22 21 20 24 24 C 1.38017 * 120.14303 * 359.97438 * 22 21 20 25 25 C 1.39828 * 119.84721 * 0.27324 * 13 12 11 26 26 C 1.37634 * 119.91585 * 359.44661 * 25 13 12 27 27 H 0.97005 * 119.99779 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.95464 * 0.02562 * 11 10 9 29 29 H 1.07993 * 120.03946 * 179.97438 * 12 11 10 30 30 H 1.07995 * 120.00204 * 0.02562 * 16 14 13 31 31 H 1.08005 * 119.99854 * 0.02562 * 17 16 14 32 32 H 1.08003 * 120.08266 * 0.02562 * 19 18 17 33 33 H 1.08002 * 119.90936 * 179.73309 * 20 19 18 34 34 H 1.08002 * 119.83153 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.09388 * 179.97438 * 24 22 21 36 36 H 1.07994 * 120.03977 * 179.72428 * 25 13 12 37 37 H 1.07997 * 119.95748 * 180.25836 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4964 2.0463 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4400 0.7000 7 6 2.0086 -1.2017 -0.0005 8 1 1.4686 -2.1370 -0.0005 9 8 3.3563 -1.2017 -0.0011 10 6 3.9716 -2.4049 -0.1080 11 6 3.2171 -3.5742 -0.0943 12 6 3.8386 -4.7974 -0.2021 13 6 5.2297 -4.8645 -0.3251 14 6 5.8999 -6.1749 -0.4416 15 8 5.2411 -7.1989 -0.4312 16 6 7.3553 -6.2431 -0.5708 17 6 7.9684 -7.4417 -0.6768 18 6 9.4323 -7.5103 -0.8061 19 6 10.1931 -6.3361 -0.8154 20 6 11.5638 -6.4078 -0.9427 21 6 12.1890 -7.6376 -1.0561 22 6 11.4439 -8.8052 -1.0431 23 17 12.2391 -10.3416 -1.1867 24 6 10.0707 -8.7497 -0.9164 25 6 5.9852 -3.6879 -0.3323 26 6 5.3565 -2.4678 -0.2298 27 1 -0.4850 0.8401 0.0004 28 1 2.1426 -3.5215 0.0012 29 1 3.2525 -5.7044 -0.1910 30 1 7.9396 -5.3349 -0.5805 31 1 7.3840 -8.3499 -0.6667 32 1 9.7072 -5.3756 -0.7271 33 1 12.1517 -5.5019 -0.9543 34 1 13.2633 -7.6870 -1.1551 35 1 9.4906 -9.6606 -0.9068 36 1 7.0603 -3.7363 -0.4226 37 1 5.9390 -1.5585 -0.2395 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008321683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:30 Heat of formation + Delta-G solvation = -18.584078 kcal Electronic energy + Delta-G solvation = -22551.767609 eV Core-core repulsion = 18864.451674 eV Total energy + Delta-G solvation = -3687.315935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23247 -40.48696 -39.98206 -37.97077 -37.51123 -35.05126 -34.55200 -32.20449 -31.89222 -31.58237 -30.27803 -27.56832 -25.94017 -23.96109 -23.62992 -23.49990 -21.73869 -20.32962 -19.52420 -19.31819 -18.39521 -17.40300 -16.95872 -16.60525 -16.33204 -16.01313 -15.89950 -15.59808 -15.40637 -15.37615 -14.80910 -14.57589 -14.52415 -14.49434 -14.17578 -14.08867 -13.40470 -13.27360 -13.10210 -12.75721 -12.60664 -12.54183 -12.50096 -12.19895 -11.96736 -11.85599 -11.38409 -11.26733 -10.96488 -10.77158 -9.96663 -9.84638 -9.38683 -9.17472 -8.55942 -6.29557 -0.75778 0.05677 0.21081 0.51559 0.97979 1.11357 1.33575 1.37312 1.53231 2.06058 2.25586 2.71841 2.81247 2.92781 3.07373 3.12213 3.73388 3.78558 3.93799 3.97040 4.04290 4.15599 4.27878 4.32213 4.41579 4.43622 4.59006 4.64601 4.80601 4.87731 4.97690 5.10377 5.17662 5.21830 5.33293 5.37311 5.39966 5.55588 5.59283 5.68827 5.77482 5.78593 6.08228 6.66473 6.76106 7.44075 8.54590 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.001872 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.741888 B =14952.174980 C =15829.572257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.408 4.408 8 H 0.082 0.918 9 O -0.224 6.224 10 C 0.154 3.846 11 C -0.252 4.252 12 C -0.023 4.023 13 C -0.249 4.249 14 C 0.431 3.569 15 O -0.514 6.514 16 C -0.217 4.217 17 C -0.020 4.020 18 C -0.073 4.073 19 C -0.097 4.097 20 C -0.105 4.105 21 C -0.103 4.103 22 C -0.051 4.051 23 Cl -0.074 7.074 24 C -0.099 4.099 25 C -0.008 4.008 26 C -0.198 4.198 27 H 0.288 0.712 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.167 0.833 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.181 0.819 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.080 -12.440 -2.311 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.484 4.484 8 H 0.100 0.900 9 O -0.129 6.129 10 C 0.102 3.898 11 C -0.271 4.271 12 C -0.041 4.041 13 C -0.251 4.251 14 C 0.318 3.682 15 O -0.397 6.397 16 C -0.235 4.235 17 C -0.039 4.039 18 C -0.074 4.074 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.078 4.078 23 Cl -0.045 7.045 24 C -0.118 4.118 25 C -0.026 4.026 26 C -0.217 4.217 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.184 0.816 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.198 0.802 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 27.690 -12.739 -2.294 30.566 hybrid contribution -1.009 0.096 0.057 1.015 sum 26.681 -12.642 -2.237 29.609 Atomic orbital electron populations 1.69701 1.07194 1.30043 1.48372 1.25397 0.95903 1.02504 0.94873 0.85169 0.78995 0.76792 0.79514 1.18815 1.19333 1.17941 1.20764 0.77861 0.96336 1.53411 0.90029 1.83458 1.21508 1.27382 1.80582 1.20010 0.93581 0.84669 0.91535 1.21190 1.00611 0.92780 1.12553 1.21077 0.94640 0.96330 0.92102 1.20208 0.93656 0.95366 1.15852 1.20543 0.89860 0.87024 0.70793 1.90605 1.69347 1.38159 1.41627 1.23524 0.93659 1.00298 1.06035 1.22498 0.92451 0.98577 0.90379 1.18968 0.92291 0.93516 1.02578 1.21931 0.94473 0.98616 0.96478 1.21456 0.94458 0.98251 0.98122 1.21555 1.01504 0.90747 0.98318 1.20969 0.92944 0.87546 1.06307 1.98383 1.80117 1.29539 1.96434 1.21402 0.92933 0.98477 0.98975 1.21404 1.01055 0.88814 0.91279 1.20605 0.90035 1.00329 1.10685 0.90245 0.86930 0.86016 0.81551 0.85590 0.82442 0.81663 0.83055 0.84226 0.80204 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.88 13.96 21.63 0.30 -52.58 16 2 C 0.01 0.74 5.49 84.87 0.47 1.21 16 3 Si 0.97 42.72 28.62 68.60 1.96 44.68 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -23.06 9.94 67.94 0.68 -22.39 16 8 H 0.08 4.90 5.42 -2.91 -0.02 4.89 16 9 O -0.22 -11.36 8.57 -20.04 -0.17 -11.53 16 10 C 0.15 6.70 6.66 22.72 0.15 6.85 16 11 C -0.25 -11.00 9.15 22.35 0.20 -10.80 16 12 C -0.02 -0.87 9.58 22.51 0.22 -0.65 16 13 C -0.25 -7.78 5.88 -20.03 -0.12 -7.90 16 14 C 0.43 12.19 7.06 26.85 0.19 12.38 16 15 O -0.51 -17.91 16.23 -4.56 -0.07 -17.99 16 16 C -0.22 -4.06 8.90 23.62 0.21 -3.85 16 17 C -0.02 -0.36 9.46 23.87 0.23 -0.14 16 18 C -0.07 -1.07 5.87 -20.15 -0.12 -1.18 16 19 C -0.10 -1.01 9.41 22.58 0.21 -0.80 16 20 C -0.11 -0.86 10.03 22.22 0.22 -0.64 16 21 C -0.10 -1.05 9.82 22.38 0.22 -0.83 16 22 C -0.05 -0.70 6.31 22.28 0.14 -0.56 16 23 Cl -0.07 -1.02 28.95 -2.72 -0.08 -1.10 16 24 C -0.10 -1.46 9.58 22.61 0.22 -1.24 16 25 C -0.01 -0.20 9.44 22.51 0.21 0.01 16 26 C -0.20 -6.47 9.97 22.35 0.22 -6.24 16 27 H 0.29 15.19 8.31 -92.70 -0.77 14.42 16 28 H 0.11 5.43 5.62 -2.91 -0.02 5.41 16 29 H 0.12 4.49 7.64 -2.91 -0.02 4.47 16 30 H 0.17 1.86 4.33 -2.91 -0.01 1.85 16 31 H 0.13 2.47 7.52 -2.91 -0.02 2.45 16 32 H 0.16 0.92 6.17 -2.91 -0.02 0.90 16 33 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.18 2.58 6.21 -2.91 -0.02 2.57 16 37 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -68.66 343.67 6.62 -62.04 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.13 Total: 13.25 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.55 Total: -36.78 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.30 Total: -52.58 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.25 Total: -29.52 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.96 Total: 44.68 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -68.66 6.62 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008321683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.458 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds