Wall clock time and date at job start Tue Mar 31 2020 14:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00271 * 2 1 4 4 H 1.48501 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47177 * 299.99783 * 3 2 1 6 6 H 1.48498 * 109.47010 * 60.00183 * 3 2 1 7 7 C 1.38815 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99438 * 169.19971 * 7 2 1 9 9 N 1.36932 * 120.00232 * 349.47136 * 7 2 1 10 10 C 1.46968 * 120.59341 * 147.63487 * 9 7 2 11 11 C 1.53817 * 108.39585 * 124.76061 * 10 9 7 12 12 N 1.46959 * 108.57873 * 49.63705 * 11 10 9 13 13 C 1.34775 * 120.59166 * 124.66608 * 12 11 10 14 14 O 1.21561 * 120.00220 * 186.14199 * 13 12 11 15 15 C 1.47781 * 120.00063 * 6.14915 * 13 12 11 16 16 C 1.39631 * 120.12861 * 44.31484 * 15 13 12 17 17 C 1.37890 * 119.89295 * 179.76881 * 16 15 13 18 18 C 1.38507 * 120.14638 * 0.51171 * 17 16 15 19 19 Cl 1.73598 * 119.87111 * 179.76484 * 18 17 16 20 20 C 1.38598 * 120.25199 * 359.74406 * 18 17 16 21 21 Cl 1.73598 * 119.94741 * 180.02562 * 20 18 17 22 22 C 1.38031 * 120.10819 * 0.02562 * 20 18 17 23 23 C 1.46963 * 118.81558 * 304.64952 * 12 11 10 24 24 C 1.46964 * 120.59352 * 327.92222 * 9 7 2 25 25 H 0.97003 * 119.99613 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.61134 * 244.54585 * 10 9 7 27 27 H 1.09001 * 109.60668 * 5.05836 * 10 9 7 28 28 H 1.09000 * 109.73939 * 289.84812 * 11 10 9 29 29 H 1.08997 * 109.67272 * 169.38950 * 11 10 9 30 30 H 1.07998 * 120.05328 * 0.02562 * 16 15 13 31 31 H 1.07995 * 119.92255 * 180.25534 * 17 16 15 32 32 H 1.08001 * 120.07689 * 179.97438 * 22 20 18 33 33 H 1.09003 * 109.60833 * 295.48234 * 23 12 11 34 34 H 1.08999 * 109.75488 * 175.05679 * 23 12 11 35 35 H 1.08997 * 109.60955 * 354.94254 * 24 9 7 36 36 H 1.09000 * 109.61468 * 115.45798 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0758 -1.2104 -0.1758 9 7 1.3428 -2.3782 0.2156 10 6 1.7886 -3.6209 -0.4300 11 6 2.0269 -4.6771 0.6625 12 7 0.8483 -4.7179 1.5393 13 6 0.1913 -5.8753 1.7520 14 8 -0.8450 -5.8781 2.3874 15 6 0.7309 -7.1410 1.2128 16 6 2.0922 -7.4289 1.3299 17 6 2.5896 -8.6135 0.8293 18 6 1.7439 -9.5131 0.2016 19 17 2.3788 -10.9996 -0.4314 20 6 0.3926 -9.2311 0.0774 21 17 -0.6604 -10.3645 -0.7101 22 6 -0.1174 -8.0506 0.5789 23 6 0.3990 -3.4741 2.1805 24 6 0.1640 -2.4190 1.0924 25 1 -0.4850 0.8401 0.0004 26 1 1.0205 -3.9708 -1.1197 27 1 2.7159 -3.4385 -0.9732 28 1 2.9081 -4.4107 1.2462 29 1 2.1746 -5.6541 0.2024 30 1 2.7537 -6.7267 1.8154 31 1 3.6417 -8.8385 0.9232 32 1 -1.1704 -7.8312 0.4815 33 1 1.1643 -3.1221 2.8723 34 1 -0.5294 -3.6536 2.7226 35 1 0.0182 -1.4428 1.5549 36 1 -0.7171 -2.6854 0.5088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:27 Heat of formation + Delta-G solvation = 12.622158 kcal Electronic energy + Delta-G solvation = -23102.883860 eV Core-core repulsion = 19446.781031 eV Total energy + Delta-G solvation = -3656.102829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52745 -38.82041 -36.95480 -36.82391 -36.66761 -34.05118 -31.64637 -31.38803 -31.20512 -29.92816 -27.10071 -24.54520 -23.59312 -23.12538 -22.64107 -20.76641 -19.22387 -17.78603 -17.15525 -16.45269 -16.37805 -15.56090 -15.19576 -14.94652 -14.69299 -14.26517 -14.18750 -13.82334 -13.65630 -13.42977 -13.34377 -12.69611 -12.56154 -12.19199 -12.10504 -11.96152 -11.51951 -11.35030 -11.21079 -11.19593 -10.91276 -10.80606 -10.61887 -10.30426 -10.08858 -9.94962 -9.65697 -9.33461 -8.97803 -8.65561 -8.38350 -6.72810 -5.89857 -3.41653 0.37525 0.73476 1.49596 1.85005 2.63459 3.11835 3.29937 3.37079 3.39100 3.40258 4.27051 4.35160 4.42438 4.64906 4.80106 4.89237 5.16954 5.28904 5.35371 5.47328 5.60025 5.63817 5.67461 5.78506 5.86027 6.03554 6.12833 6.23414 6.29432 6.42619 6.62353 6.75952 7.18634 7.51063 7.66564 7.71116 8.31228 8.33449 9.07363 9.67679 10.25918 11.17124 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.002882 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.001114 B = 9713.731466 C =10109.101162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.080 3.920 12 N -0.585 5.585 13 C 0.550 3.450 14 O -0.542 6.542 15 C -0.098 4.098 16 C -0.071 4.071 17 C -0.104 4.104 18 C -0.018 4.018 19 Cl -0.048 7.048 20 C -0.036 4.036 21 Cl -0.045 7.045 22 C -0.050 4.050 23 C 0.086 3.914 24 C 0.159 3.841 25 H 0.256 0.744 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 -19.165 1.060 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.044 4.044 12 N -0.316 5.316 13 C 0.337 3.663 14 O -0.420 6.420 15 C -0.102 4.102 16 C -0.090 4.090 17 C -0.123 4.123 18 C -0.045 4.045 19 Cl -0.019 7.019 20 C -0.064 4.064 21 Cl -0.016 7.016 22 C -0.070 4.070 23 C -0.037 4.037 24 C 0.033 3.967 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.315 -19.195 1.253 19.714 hybrid contribution 0.400 0.645 -0.255 0.801 sum 4.716 -18.550 0.999 19.166 Atomic orbital electron populations 1.69963 1.05348 1.25715 1.53510 1.25233 0.95428 0.98626 0.99970 0.86162 0.79258 0.83582 0.77373 1.20159 1.21558 1.21453 1.19217 0.90910 0.83643 1.45138 0.91506 1.43985 1.32611 1.03903 1.50867 1.21377 0.98697 0.87391 0.92207 1.22759 0.87275 1.00802 0.93595 1.48009 1.29509 1.07945 1.46162 1.18112 0.84152 0.83223 0.80809 1.90781 1.22793 1.86424 1.42045 1.20088 0.93901 0.95899 1.00273 1.21491 0.94086 0.96267 0.97184 1.20987 1.00327 0.92748 0.98205 1.20954 0.91930 0.90614 1.01038 1.98396 1.86454 1.31919 1.85105 1.20611 0.89960 0.93647 1.02156 1.98397 1.65180 1.59550 1.78481 1.21066 1.01117 0.90232 0.94570 1.22616 0.99947 0.83770 0.97385 1.21210 0.88669 0.97194 0.89648 0.93387 0.95777 0.91317 0.91224 0.90464 0.83456 0.83314 0.83150 0.91801 0.89927 0.87983 0.95748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 11.06 55.49 0.61 -24.54 16 2 C 0.01 0.18 5.05 -17.43 -0.09 0.09 16 3 Si 0.91 20.70 29.57 -169.99 -5.03 15.68 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.68 9.57 -15.06 -0.14 -6.82 16 8 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -13.87 2.95 -171.76 -0.51 -14.38 16 10 C 0.13 2.48 6.70 -3.36 -0.02 2.46 16 11 C 0.08 1.20 5.27 -3.37 -0.02 1.19 16 12 N -0.59 -9.96 2.95 -173.35 -0.51 -10.47 16 13 C 0.55 9.19 7.26 -12.36 -0.09 9.10 16 14 O -0.54 -10.77 16.40 5.31 0.09 -10.68 16 15 C -0.10 -1.29 4.98 -104.97 -0.52 -1.81 16 16 C -0.07 -0.73 7.42 -39.19 -0.29 -1.02 16 17 C -0.10 -0.92 9.81 -39.61 -0.39 -1.31 16 18 C -0.02 -0.18 6.33 -39.35 -0.25 -0.43 16 19 Cl -0.05 -0.45 27.94 -51.86 -1.45 -1.90 16 20 C -0.04 -0.41 6.32 -39.52 -0.25 -0.66 16 21 Cl -0.05 -0.48 27.94 -51.86 -1.45 -1.93 16 22 C -0.05 -0.63 9.46 -39.15 -0.37 -1.00 16 23 C 0.09 1.63 6.59 -3.60 -0.02 1.61 16 24 C 0.16 3.65 5.45 -3.60 -0.02 3.63 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.95 4.88 -51.93 -0.25 0.70 16 30 H 0.15 1.30 7.00 -52.49 -0.37 0.94 16 31 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.58 7.00 -51.93 -0.36 1.21 16 35 H 0.10 2.60 6.06 -51.93 -0.31 2.28 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -29.61 328.07 -9.57 -39.18 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.79 Total: -0.95 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.48 Total: 5.03 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.40 Total: -49.38 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.90 Total: -3.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.61 -9.57 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.801 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds