Wall clock time and date at job start Tue Mar 31 2020 14:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00271 * 2 1 4 4 H 1.48501 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47177 * 299.99783 * 3 2 1 6 6 H 1.48498 * 109.47010 * 60.00183 * 3 2 1 7 7 C 1.38815 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99438 * 169.19971 * 7 2 1 9 9 N 1.36932 * 120.00232 * 349.47136 * 7 2 1 10 10 C 1.46968 * 120.59341 * 147.63487 * 9 7 2 11 11 C 1.53817 * 108.39585 * 124.76061 * 10 9 7 12 12 N 1.46959 * 108.57873 * 49.63705 * 11 10 9 13 13 C 1.34775 * 120.59166 * 124.66608 * 12 11 10 14 14 O 1.21561 * 120.00220 * 186.14199 * 13 12 11 15 15 C 1.47781 * 120.00063 * 6.14915 * 13 12 11 16 16 C 1.39631 * 120.12861 * 44.31484 * 15 13 12 17 17 C 1.37890 * 119.89295 * 179.76881 * 16 15 13 18 18 C 1.38507 * 120.14638 * 0.51171 * 17 16 15 19 19 Cl 1.73598 * 119.87111 * 179.76484 * 18 17 16 20 20 C 1.38598 * 120.25199 * 359.74406 * 18 17 16 21 21 Cl 1.73598 * 119.94741 * 180.02562 * 20 18 17 22 22 C 1.38031 * 120.10819 * 0.02562 * 20 18 17 23 23 C 1.46963 * 118.81558 * 304.64952 * 12 11 10 24 24 C 1.46964 * 120.59352 * 327.92222 * 9 7 2 25 25 H 0.97003 * 119.99613 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.61134 * 244.54585 * 10 9 7 27 27 H 1.09001 * 109.60668 * 5.05836 * 10 9 7 28 28 H 1.09000 * 109.73939 * 289.84812 * 11 10 9 29 29 H 1.08997 * 109.67272 * 169.38950 * 11 10 9 30 30 H 1.07998 * 120.05328 * 0.02562 * 16 15 13 31 31 H 1.07995 * 119.92255 * 180.25534 * 17 16 15 32 32 H 1.08001 * 120.07689 * 179.97438 * 22 20 18 33 33 H 1.09003 * 109.60833 * 295.48234 * 23 12 11 34 34 H 1.08999 * 109.75488 * 175.05679 * 23 12 11 35 35 H 1.08997 * 109.60955 * 354.94254 * 24 9 7 36 36 H 1.09000 * 109.61468 * 115.45798 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0758 -1.2104 -0.1758 9 7 1.3428 -2.3782 0.2156 10 6 1.7886 -3.6209 -0.4300 11 6 2.0269 -4.6771 0.6625 12 7 0.8483 -4.7179 1.5393 13 6 0.1913 -5.8753 1.7520 14 8 -0.8450 -5.8781 2.3874 15 6 0.7309 -7.1410 1.2128 16 6 2.0922 -7.4289 1.3299 17 6 2.5896 -8.6135 0.8293 18 6 1.7439 -9.5131 0.2016 19 17 2.3788 -10.9996 -0.4314 20 6 0.3926 -9.2311 0.0774 21 17 -0.6604 -10.3645 -0.7101 22 6 -0.1174 -8.0506 0.5789 23 6 0.3990 -3.4741 2.1805 24 6 0.1640 -2.4190 1.0924 25 1 -0.4850 0.8401 0.0004 26 1 1.0205 -3.9708 -1.1197 27 1 2.7159 -3.4385 -0.9732 28 1 2.9081 -4.4107 1.2462 29 1 2.1746 -5.6541 0.2024 30 1 2.7537 -6.7267 1.8154 31 1 3.6417 -8.8385 0.9232 32 1 -1.1704 -7.8312 0.4815 33 1 1.1643 -3.1221 2.8723 34 1 -0.5294 -3.6536 2.7226 35 1 0.0182 -1.4428 1.5549 36 1 -0.7171 -2.6854 0.5088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:26 Heat of formation + Delta-G solvation = -3.586460 kcal Electronic energy + Delta-G solvation = -23103.586718 eV Core-core repulsion = 19446.781031 eV Total energy + Delta-G solvation = -3656.805688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68103 -39.90716 -38.45283 -37.64404 -37.55871 -35.71469 -33.17061 -32.69222 -32.23740 -31.28576 -28.75384 -26.01739 -24.91958 -24.30183 -23.88285 -22.21235 -20.60672 -19.15608 -18.25787 -17.91563 -17.42204 -16.86976 -16.76410 -16.18347 -15.99223 -15.47414 -15.19534 -15.18503 -15.08530 -14.93941 -14.88728 -14.05025 -13.61552 -13.41181 -13.11205 -12.98158 -12.96626 -12.77781 -12.49236 -12.40032 -12.25732 -12.16352 -12.03314 -11.96281 -11.89963 -11.67043 -11.04050 -10.62447 -10.18186 -9.91215 -9.82381 -8.61687 -7.87185 -5.42501 -0.52368 -0.09472 0.68374 1.02219 1.47349 1.50299 1.51214 1.61034 1.89126 2.34175 2.51376 3.26720 3.29635 3.47376 3.59559 3.84370 3.94140 4.04167 4.22255 4.24934 4.36409 4.50884 4.55547 4.60948 4.68701 4.78905 4.81959 4.86974 5.00746 5.05366 5.23265 5.32406 5.44888 5.62560 5.67191 6.37244 6.38513 6.98212 7.11261 7.78350 8.33182 9.17613 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.002882 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.001114 B = 9713.731466 C =10109.101162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.078 0.922 9 N -0.608 5.608 10 C 0.124 3.876 11 C 0.092 3.908 12 N -0.590 5.590 13 C 0.552 3.448 14 O -0.581 6.581 15 C -0.115 4.115 16 C -0.061 4.061 17 C -0.087 4.087 18 C -0.017 4.017 19 Cl -0.037 7.037 20 C -0.042 4.042 21 Cl -0.045 7.045 22 C -0.059 4.059 23 C 0.102 3.898 24 C 0.170 3.830 25 H 0.250 0.750 26 H 0.009 0.991 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.170 0.830 31 H 0.185 0.815 32 H 0.139 0.861 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.072 0.928 36 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -20.982 1.111 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.095 0.905 9 N -0.332 5.332 10 C -0.002 4.002 11 C -0.031 4.031 12 N -0.320 5.320 13 C 0.341 3.659 14 O -0.463 6.463 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.105 4.105 18 C -0.045 4.045 19 Cl -0.008 7.008 20 C -0.070 4.070 21 Cl -0.015 7.015 22 C -0.079 4.079 23 C -0.022 4.022 24 C 0.043 3.957 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.187 0.813 31 H 0.203 0.797 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 7.532 -21.056 1.289 22.400 hybrid contribution -0.588 1.080 -0.337 1.275 sum 6.944 -19.977 0.952 21.171 Atomic orbital electron populations 1.70142 1.06927 1.25896 1.55512 1.26000 0.96076 1.01852 1.00587 0.85150 0.78854 0.79577 0.76496 1.18409 1.22344 1.21933 1.19612 0.91523 0.84522 1.43453 0.90479 1.44234 1.32325 1.04965 1.51649 1.21588 0.98634 0.86576 0.93389 1.22767 0.86932 1.01067 0.92296 1.48039 1.30208 1.07329 1.46430 1.18628 0.83294 0.84116 0.79848 1.90756 1.24612 1.87145 1.43756 1.19803 0.95443 0.94412 1.02220 1.21692 0.92694 0.97122 0.96490 1.21341 1.01714 0.91334 0.96150 1.21159 0.91603 0.91179 1.00512 1.98409 1.86139 1.31321 1.84912 1.20615 0.90642 0.93336 1.02405 1.98398 1.65387 1.59324 1.78439 1.20971 1.00730 0.90892 0.95324 1.22205 1.00275 0.83781 0.95970 1.20884 0.87704 0.96948 0.90115 0.94087 0.97315 0.89815 0.89039 0.87016 0.81301 0.79742 0.84352 0.90520 0.90581 0.90974 0.99339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.28 11.06 21.65 0.24 -54.04 16 2 C -0.05 -2.66 5.05 84.86 0.43 -2.23 16 3 Si 0.97 42.84 29.57 68.60 2.03 44.87 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.26 -13.34 9.57 84.04 0.80 -12.54 16 8 H 0.08 3.72 7.85 -2.91 -0.02 3.70 16 9 N -0.61 -28.60 2.95 -697.33 -2.06 -30.66 16 10 C 0.12 4.55 6.70 86.57 0.58 5.13 16 11 C 0.09 2.51 5.27 86.57 0.46 2.97 16 12 N -0.59 -19.40 2.95 -820.63 -2.42 -21.81 16 13 C 0.55 18.07 7.26 86.77 0.63 18.70 16 14 O -0.58 -23.52 16.40 -3.91 -0.06 -23.58 16 15 C -0.12 -2.81 4.98 -20.09 -0.10 -2.91 16 16 C -0.06 -1.01 7.42 22.52 0.17 -0.84 16 17 C -0.09 -1.15 9.81 22.25 0.22 -0.93 16 18 C -0.02 -0.28 6.33 22.42 0.14 -0.14 16 19 Cl -0.04 -0.58 27.94 -2.72 -0.08 -0.65 16 20 C -0.04 -0.88 6.32 22.31 0.14 -0.74 16 21 Cl -0.04 -0.90 27.94 -2.72 -0.08 -0.97 16 22 C -0.06 -1.43 9.46 22.55 0.21 -1.21 16 23 C 0.10 3.89 6.59 86.42 0.57 4.46 16 24 C 0.17 8.11 5.45 86.42 0.47 8.58 16 25 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 2.79 7.93 -2.39 -0.02 2.77 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.11 2.29 4.88 -2.39 -0.01 2.28 16 30 H 0.17 2.09 7.00 -2.91 -0.02 2.07 16 31 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.08 3.00 7.00 -2.39 -0.02 2.99 16 35 H 0.07 3.86 6.06 -2.39 -0.01 3.85 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -66.57 328.07 3.42 -63.15 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.12 Total: 5.40 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 4.72 Total: 18.30 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -4.24 Total: -106.51 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.15 Total: -1.63 kcal Total: -66.57 3.42 -63.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.563 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds