Wall clock time and date at job start Tue Mar 31 2020 15:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39639 * 120.15419 * 252.13057 * 3 2 1 5 5 C 1.37939 * 119.84917 * 179.76670 * 4 3 2 6 6 C 1.38366 * 120.15078 * 0.48747 * 5 4 3 7 7 S 1.76205 * 119.84744 * 179.74188 * 6 5 4 8 8 O 1.42106 * 106.39898 * 18.06972 * 7 6 5 9 9 O 1.42092 * 106.40133 * 150.99025 * 7 6 5 10 10 N 1.65598 * 107.21725 * 264.52850 * 7 6 5 11 11 C 1.38860 * 119.99942 * 64.60116 * 10 7 6 12 12 C 1.39572 * 119.84052 * 253.46190 * 11 10 7 13 13 C 1.36332 * 120.16096 * 179.71574 * 12 11 10 14 14 C 1.40888 * 119.83859 * 0.55765 * 13 12 11 15 15 C 1.41130 * 120.15665 * 179.69914 * 14 13 12 16 16 H 1.08007 * 120.00095 * 153.34447 * 15 14 13 17 17 C 1.39865 * 120.00334 * 333.33941 * 15 14 13 18 18 N 1.30902 * 119.99644 * 341.13183 * 17 15 14 19 19 Si 1.86794 * 120.00309 * 161.12436 * 17 15 14 20 20 H 1.48506 * 109.47262 * 94.97786 * 19 17 15 21 21 H 1.48500 * 109.47355 * 214.98238 * 19 17 15 22 22 H 1.48509 * 109.47208 * 334.98449 * 19 17 15 23 23 C 1.40886 * 119.68749 * 359.71315 * 14 13 12 24 24 C 1.36348 * 119.83594 * 0.02562 * 23 14 13 25 25 C 1.38359 * 120.30432 * 359.76909 * 6 5 4 26 26 C 1.37943 * 120.15221 * 359.97438 * 25 6 5 27 27 H 1.08000 * 120.06987 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.92864 * 180.21199 * 5 4 3 29 29 H 0.96990 * 120.00065 * 244.59270 * 10 7 6 30 30 H 1.08002 * 119.91499 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.08213 * 180.27389 * 13 12 11 32 32 H 0.96998 * 119.99666 * 179.97438 * 18 17 15 33 33 H 1.07992 * 120.08294 * 179.97438 * 23 14 13 34 34 H 1.07996 * 119.91703 * 179.97438 * 24 23 14 35 35 H 1.08004 * 119.92398 * 179.97438 * 25 6 5 36 36 H 1.08004 * 120.07765 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.3715 1.1492 5 6 4.6486 0.3652 1.1437 6 6 5.3374 0.0023 -0.0002 7 16 7.0995 0.0036 -0.0003 8 8 7.5008 -0.0066 1.3628 9 8 7.5014 -0.9871 -0.9363 10 7 7.5885 1.4590 -0.6210 11 6 7.3004 2.6354 0.0582 12 6 6.3136 3.4943 -0.4281 13 6 6.0215 4.6481 0.2367 14 6 6.7267 4.9785 1.4108 15 6 6.4342 6.1743 2.1009 16 1 6.6197 6.2445 3.1625 17 6 5.9041 7.2687 1.4099 18 7 6.0172 7.3377 0.1076 19 14 5.0345 8.6319 2.3453 20 1 5.9954 9.7278 2.6299 21 1 3.9130 9.1572 1.5258 22 1 4.5039 8.0943 3.6240 23 6 7.7255 4.1095 1.8927 24 6 8.0033 2.9562 1.2205 25 6 4.6490 -0.3611 -1.1440 26 6 3.2696 -0.3644 -1.1508 27 1 2.7328 0.6593 2.0412 28 1 5.1923 0.6484 2.0328 29 1 8.0761 1.4897 -1.4588 30 1 5.7772 3.2421 -1.3309 31 1 5.2546 5.3097 -0.1383 32 1 5.6492 8.0965 -0.3717 33 1 8.2702 4.3566 2.7919 34 1 8.7689 2.2894 1.5885 35 1 5.1928 -0.6429 -2.0335 36 1 2.7334 -0.6479 -2.0444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029967125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:08 Heat of formation + Delta-G solvation = 1.832088 kcal Electronic energy + Delta-G solvation = -24382.723823 eV Core-core repulsion = 20730.629658 eV Total energy + Delta-G solvation = -3652.094166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.56331 -38.09770 -36.90518 -36.66773 -35.58025 -34.87223 -32.93740 -31.80505 -31.35880 -29.69597 -28.85440 -24.84782 -24.60908 -23.07117 -21.26967 -20.89785 -19.41407 -19.19009 -17.82505 -17.46527 -17.24823 -16.56985 -15.84565 -15.41527 -14.92793 -14.60849 -14.30361 -14.22610 -14.06418 -13.78289 -13.74890 -13.05885 -12.92231 -12.72155 -12.66090 -12.39600 -12.19927 -11.99539 -11.84172 -11.74405 -11.41280 -11.39008 -11.24145 -11.00465 -10.90905 -10.58364 -10.18735 -9.92783 -9.51839 -9.40266 -9.27361 -8.92588 -7.74830 -7.47136 -7.01204 -4.55711 0.13065 0.68853 1.09728 2.37675 2.50688 2.53349 2.94632 2.96872 2.97683 3.04379 3.32441 3.50639 3.59953 3.76860 3.99658 4.35591 4.40656 4.60215 4.79520 5.07074 5.28126 5.33926 5.44573 5.69517 5.73805 5.91100 5.98106 6.10649 6.18016 6.29815 6.50751 6.79795 6.86510 6.98028 7.10387 7.16909 7.26142 7.42200 7.82587 7.86424 7.90937 8.08097 8.40696 8.65293 8.75571 9.93065 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.004423 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.631459 B = 6329.255981 C = 8211.838938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.253 3.747 3 C 0.018 3.982 4 C -0.090 4.090 5 C -0.008 4.008 6 C -0.639 4.639 7 S 2.672 3.328 8 O -0.950 6.950 9 O -0.976 6.976 10 N -1.026 6.026 11 C -0.041 4.041 12 C -0.081 4.081 13 C -0.166 4.166 14 C 0.122 3.878 15 C -0.449 4.449 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.779 5.779 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.223 4.223 24 C -0.059 4.059 25 C -0.023 4.023 26 C -0.097 4.097 27 H 0.142 0.858 28 H 0.155 0.845 29 H 0.409 0.591 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.284 0.716 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.147 0.853 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -9.036 -2.365 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.062 4.062 3 C 0.015 3.985 4 C -0.111 4.111 5 C -0.027 4.027 6 C -0.724 4.724 7 S 2.764 3.236 8 O -0.940 6.940 9 O -0.966 6.966 10 N -0.781 5.781 11 C -0.138 4.138 12 C -0.102 4.102 13 C -0.186 4.186 14 C 0.119 3.881 15 C -0.478 4.478 16 H 0.101 0.899 17 C -0.144 4.144 18 N -0.403 5.403 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.244 4.244 24 C -0.081 4.081 25 C -0.042 4.042 26 C -0.118 4.118 27 H 0.160 0.840 28 H 0.172 0.828 29 H 0.246 0.754 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.165 0.835 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.658 -9.661 -2.156 10.553 hybrid contribution -0.526 1.138 -0.295 1.288 sum -4.183 -8.523 -2.450 9.806 Atomic orbital electron populations 1.81258 1.11948 1.07892 1.07278 1.25705 0.92649 0.94009 0.93868 1.16244 0.84274 1.01960 0.96033 1.21332 0.94429 0.98137 0.97228 1.20988 0.93843 0.90706 0.97142 1.31415 1.28742 1.11866 1.00423 1.03128 0.73542 0.72839 0.74118 1.93575 1.79869 1.86070 1.34495 1.93541 1.81411 1.57874 1.63785 1.52138 1.69235 1.20563 1.36115 1.16581 1.06869 0.90847 0.99482 1.20590 0.96436 0.95011 0.98177 1.20872 1.02560 0.96426 0.98791 1.17734 0.87962 0.91502 0.90893 1.19687 1.35336 0.96073 0.96664 0.89862 1.25983 0.93769 0.99779 0.94842 1.69852 1.32621 1.29330 1.08484 0.86293 0.79581 0.80202 0.80762 1.19350 1.19885 1.18171 1.20685 1.02561 0.97798 1.03308 1.20622 0.97004 0.95894 0.94550 1.20814 0.93914 0.92850 0.96641 1.21222 0.94298 0.99275 0.96986 0.84011 0.82756 0.75431 0.89050 0.86653 0.90460 0.88325 0.88136 0.83548 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.65 18.54 41.84 0.78 -4.88 16 2 C 0.25 3.01 15.33 -22.47 -0.34 2.67 16 3 C 0.02 0.20 5.73 -106.93 -0.61 -0.41 16 4 C -0.09 -1.01 9.76 -39.17 -0.38 -1.39 16 5 C -0.01 -0.10 9.51 -39.64 -0.38 -0.48 16 6 C -0.64 -8.41 5.90 -39.49 -0.23 -8.64 16 7 S 2.67 39.93 5.70 -107.50 -0.61 39.31 16 8 O -0.95 -16.72 15.99 -57.17 -0.91 -17.64 16 9 O -0.98 -15.56 17.42 -57.17 -1.00 -16.56 16 10 N -1.03 -15.71 5.65 32.51 0.18 -15.53 16 11 C -0.04 -0.78 5.82 -83.69 -0.49 -1.27 16 12 C -0.08 -1.61 9.90 -39.77 -0.39 -2.00 16 13 C -0.17 -3.78 8.62 -39.27 -0.34 -4.12 16 14 C 0.12 2.91 5.54 -106.80 -0.59 2.32 16 15 C -0.45 -10.71 9.02 -37.88 -0.34 -11.05 16 16 H 0.08 1.91 7.91 -52.48 -0.42 1.49 16 17 C 0.08 1.74 5.09 -17.34 -0.09 1.65 16 18 N -0.78 -18.28 11.16 55.54 0.62 -17.66 16 19 Si 0.91 17.02 29.60 -169.99 -5.03 11.98 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 22 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 23 C -0.22 -4.92 9.74 -39.26 -0.38 -5.31 16 24 C -0.06 -1.21 9.15 -39.77 -0.36 -1.58 16 25 C -0.02 -0.26 9.50 -39.64 -0.38 -0.63 16 26 C -0.10 -0.96 9.76 -39.17 -0.38 -1.34 16 27 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.15 1.98 7.49 -52.49 -0.39 1.58 16 29 H 0.41 5.28 8.95 -34.47 -0.31 4.97 16 30 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.12 2.74 6.35 -52.49 -0.33 2.40 16 32 H 0.28 6.06 8.30 -40.82 -0.34 5.72 16 33 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.10 1.94 7.83 -52.49 -0.41 1.52 16 35 H 0.15 1.34 7.74 -52.48 -0.41 0.93 16 36 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -28.52 340.55 -9.63 -38.16 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.09 Total: 9.26 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -5.70 Total: -31.59 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 1.58 Total: -38.06 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.91 Total: -34.19 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 39.93 SS G_CDS: -0.61 Total: 39.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.52 -9.63 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.987 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds