Wall clock time and date at job start Tue Mar 31 2020 15:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39639 * 120.15419 * 252.13057 * 3 2 1 5 5 C 1.37939 * 119.84917 * 179.76670 * 4 3 2 6 6 C 1.38366 * 120.15078 * 0.48747 * 5 4 3 7 7 S 1.76205 * 119.84744 * 179.74188 * 6 5 4 8 8 O 1.42106 * 106.39898 * 18.06972 * 7 6 5 9 9 O 1.42092 * 106.40133 * 150.99025 * 7 6 5 10 10 N 1.65598 * 107.21725 * 264.52850 * 7 6 5 11 11 C 1.38860 * 119.99942 * 64.60116 * 10 7 6 12 12 C 1.39572 * 119.84052 * 253.46190 * 11 10 7 13 13 C 1.36332 * 120.16096 * 179.71574 * 12 11 10 14 14 C 1.40888 * 119.83859 * 0.55765 * 13 12 11 15 15 C 1.41130 * 120.15665 * 179.69914 * 14 13 12 16 16 H 1.08007 * 120.00095 * 153.34447 * 15 14 13 17 17 C 1.39865 * 120.00334 * 333.33941 * 15 14 13 18 18 N 1.30902 * 119.99644 * 341.13183 * 17 15 14 19 19 Si 1.86794 * 120.00309 * 161.12436 * 17 15 14 20 20 H 1.48506 * 109.47262 * 94.97786 * 19 17 15 21 21 H 1.48500 * 109.47355 * 214.98238 * 19 17 15 22 22 H 1.48509 * 109.47208 * 334.98449 * 19 17 15 23 23 C 1.40886 * 119.68749 * 359.71315 * 14 13 12 24 24 C 1.36348 * 119.83594 * 0.02562 * 23 14 13 25 25 C 1.38359 * 120.30432 * 359.76909 * 6 5 4 26 26 C 1.37943 * 120.15221 * 359.97438 * 25 6 5 27 27 H 1.08000 * 120.06987 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.92864 * 180.21199 * 5 4 3 29 29 H 0.96990 * 120.00065 * 244.59270 * 10 7 6 30 30 H 1.08002 * 119.91499 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.08213 * 180.27389 * 13 12 11 32 32 H 0.96998 * 119.99666 * 179.97438 * 18 17 15 33 33 H 1.07992 * 120.08294 * 179.97438 * 23 14 13 34 34 H 1.07996 * 119.91703 * 179.97438 * 24 23 14 35 35 H 1.08004 * 119.92398 * 179.97438 * 25 6 5 36 36 H 1.08004 * 120.07765 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.3715 1.1492 5 6 4.6486 0.3652 1.1437 6 6 5.3374 0.0023 -0.0002 7 16 7.0995 0.0036 -0.0003 8 8 7.5008 -0.0066 1.3628 9 8 7.5014 -0.9871 -0.9363 10 7 7.5885 1.4590 -0.6210 11 6 7.3004 2.6354 0.0582 12 6 6.3136 3.4943 -0.4281 13 6 6.0215 4.6481 0.2367 14 6 6.7267 4.9785 1.4108 15 6 6.4342 6.1743 2.1009 16 1 6.6197 6.2445 3.1625 17 6 5.9041 7.2687 1.4099 18 7 6.0172 7.3377 0.1076 19 14 5.0345 8.6319 2.3453 20 1 5.9954 9.7278 2.6299 21 1 3.9130 9.1572 1.5258 22 1 4.5039 8.0943 3.6240 23 6 7.7255 4.1095 1.8927 24 6 8.0033 2.9562 1.2205 25 6 4.6490 -0.3611 -1.1440 26 6 3.2696 -0.3644 -1.1508 27 1 2.7328 0.6593 2.0412 28 1 5.1923 0.6484 2.0328 29 1 8.0761 1.4897 -1.4588 30 1 5.7772 3.2421 -1.3309 31 1 5.2546 5.3097 -0.1383 32 1 5.6492 8.0965 -0.3717 33 1 8.2702 4.3566 2.7919 34 1 8.7689 2.2894 1.5885 35 1 5.1928 -0.6429 -2.0335 36 1 2.7334 -0.6479 -2.0444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029967125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:08 Heat of formation + Delta-G solvation = -14.425392 kcal Electronic energy + Delta-G solvation = -24383.428801 eV Core-core repulsion = 20730.629658 eV Total energy + Delta-G solvation = -3652.799143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47621 -39.72019 -38.21573 -37.66665 -36.88935 -36.43535 -34.52676 -32.76049 -32.24097 -31.37103 -30.50010 -26.51006 -25.58707 -23.96117 -22.93597 -22.52321 -20.62706 -20.10940 -19.26778 -18.92539 -18.56602 -17.92341 -17.10679 -16.83781 -15.86013 -15.79087 -15.70461 -15.45034 -15.25574 -15.11191 -14.63545 -14.52230 -14.05397 -13.96113 -13.82418 -13.64997 -13.63970 -13.61210 -13.16192 -13.07072 -12.98612 -12.76554 -12.55825 -12.30090 -12.25032 -11.99833 -11.70931 -11.55811 -11.05156 -10.52905 -10.39019 -10.14421 -9.42914 -9.15692 -8.67738 -6.31819 -0.85273 -0.50701 0.22604 0.89911 1.23351 1.42525 1.43071 1.49489 1.56045 1.56808 2.12943 2.21840 2.54825 2.64159 2.69500 2.83677 3.36088 3.72301 3.79433 3.81075 4.18554 4.33190 4.49677 4.51321 4.57067 4.75186 4.82249 4.89077 4.98804 5.10417 5.11950 5.18342 5.32809 5.41765 5.61802 5.72143 5.84836 6.11322 6.17353 6.23474 6.32064 6.45024 6.70340 6.93209 7.05318 8.29267 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.004423 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.631459 B = 6329.255981 C = 8211.838938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.276 3.724 3 C 0.019 3.981 4 C -0.089 4.089 5 C -0.026 4.026 6 C -0.649 4.649 7 S 2.696 3.304 8 O -0.979 6.979 9 O -0.980 6.980 10 N -1.026 6.026 11 C -0.015 4.015 12 C -0.077 4.077 13 C -0.183 4.183 14 C 0.095 3.905 15 C -0.489 4.489 16 H 0.079 0.921 17 C 0.042 3.958 18 N -0.813 5.813 19 Si 0.974 3.026 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.236 4.236 24 C -0.069 4.069 25 C -0.024 4.024 26 C -0.083 4.083 27 H 0.158 0.842 28 H 0.147 0.853 29 H 0.422 0.578 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.290 0.710 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.170 0.830 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -10.244 -3.604 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.040 4.040 3 C 0.015 3.985 4 C -0.110 4.110 5 C -0.045 4.045 6 C -0.737 4.737 7 S 2.790 3.210 8 O -0.969 6.969 9 O -0.971 6.971 10 N -0.782 5.782 11 C -0.111 4.111 12 C -0.098 4.098 13 C -0.204 4.204 14 C 0.092 3.908 15 C -0.518 4.518 16 H 0.097 0.903 17 C -0.175 4.175 18 N -0.438 5.438 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.257 4.257 24 C -0.090 4.090 25 C -0.043 4.043 26 C -0.104 4.104 27 H 0.176 0.824 28 H 0.165 0.835 29 H 0.262 0.738 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.188 0.812 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.420 -10.851 -3.399 12.200 hybrid contribution -0.245 1.231 0.000 1.256 sum -4.665 -9.620 -3.399 11.219 Atomic orbital electron populations 1.81294 1.12954 1.09118 1.08404 1.25691 0.92508 0.92942 0.92816 1.16317 0.83709 1.02018 0.96446 1.21483 0.93861 0.97543 0.98137 1.21014 0.94630 0.91790 0.97056 1.31062 1.27040 1.13906 1.01739 1.01953 0.74023 0.72005 0.73037 1.93547 1.81109 1.86269 1.36019 1.93541 1.82146 1.57491 1.63876 1.52076 1.70117 1.19503 1.36489 1.16507 1.04968 0.91288 0.98330 1.20789 0.96387 0.93998 0.98615 1.20835 1.02831 0.97430 0.99279 1.18007 0.88831 0.92133 0.91789 1.19871 1.37962 0.97219 0.96753 0.90312 1.26663 0.93795 1.01487 0.95519 1.69884 1.33760 1.30465 1.09673 0.85298 0.78495 0.77344 0.79316 1.18896 1.19183 1.18254 1.20820 1.02611 0.98423 1.03797 1.20827 0.97485 0.95586 0.95137 1.21140 0.94543 0.92082 0.96544 1.21571 0.93904 0.97351 0.97589 0.82415 0.83509 0.73842 0.86444 0.88120 0.89885 0.88212 0.87055 0.81241 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.47 18.54 19.00 0.35 -11.12 16 2 C 0.28 5.90 15.33 88.33 1.35 7.26 16 3 C 0.02 0.35 5.73 -21.36 -0.12 0.23 16 4 C -0.09 -1.82 9.76 22.54 0.22 -1.60 16 5 C -0.03 -0.62 9.51 22.23 0.21 -0.41 16 6 C -0.65 -15.54 5.90 22.33 0.13 -15.41 16 7 S 2.70 75.23 5.70 -56.49 -0.32 74.91 16 8 O -0.98 -33.47 15.99 -128.00 -2.05 -35.52 16 9 O -0.98 -28.66 17.42 -128.00 -2.23 -30.89 16 10 N -1.03 -29.24 5.65 -51.06 -0.29 -29.53 16 11 C -0.01 -0.54 5.82 38.67 0.23 -0.32 16 12 C -0.08 -2.98 9.90 22.15 0.22 -2.76 16 13 C -0.18 -8.48 8.62 22.47 0.19 -8.29 16 14 C 0.10 4.67 5.54 -21.27 -0.12 4.55 16 15 C -0.49 -24.26 9.02 23.37 0.21 -24.05 16 16 H 0.08 3.79 7.91 -2.91 -0.02 3.77 16 17 C 0.04 1.96 5.09 85.23 0.43 2.40 16 18 N -0.81 -39.06 11.16 21.82 0.24 -38.82 16 19 Si 0.97 35.43 29.60 68.60 2.03 37.46 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 21 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 22 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 23 C -0.24 -10.68 9.74 22.48 0.22 -10.47 16 24 C -0.07 -2.81 9.15 22.15 0.20 -2.61 16 25 C -0.02 -0.44 9.50 22.23 0.21 -0.23 16 26 C -0.08 -1.33 9.76 22.54 0.22 -1.11 16 27 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 28 H 0.15 3.72 7.49 -2.91 -0.02 3.70 16 29 H 0.42 9.81 8.95 -96.76 -0.87 8.95 16 30 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.10 4.91 6.35 -2.91 -0.02 4.89 16 32 H 0.29 12.60 8.30 -92.71 -0.77 11.83 16 33 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.11 4.23 7.83 -2.91 -0.02 4.20 16 35 H 0.17 2.34 7.74 -2.91 -0.02 2.32 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -61.93 340.55 1.83 -60.10 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.28 Total: 26.21 kcal Atomic # 6 Polarization: -56.62 SS G_CDS: 3.81 Total: -52.80 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: 0.31 Total: -79.46 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: -4.28 Total: -66.41 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Atomic # 16 Polarization: 75.23 SS G_CDS: -0.32 Total: 74.91 kcal Total: -61.93 1.83 -60.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.675 kcal (2) G-P(sol) polarization free energy of solvation -61.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds