Wall clock time and date at job start Tue Mar 31 2020 15:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86791 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47242 * 270.00133 * 3 2 1 5 5 H 1.48502 * 109.47232 * 29.99893 * 3 2 1 6 6 H 1.48502 * 109.47245 * 149.99720 * 3 2 1 7 7 C 1.38799 * 119.99525 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99506 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00641 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00015 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46821 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00586 * 0.02562 * 11 10 9 13 13 O 1.34246 * 119.99615 * 180.02562 * 11 10 9 14 14 C 1.35989 * 116.99872 * 185.77073 * 13 11 10 15 15 C 1.39032 * 119.99031 * 249.01437 * 14 13 11 16 16 C 1.37834 * 120.53731 * 179.72505 * 15 14 13 17 17 C 1.39006 * 120.16424 * 0.23326 * 16 15 14 18 18 O 1.35194 * 132.20971 * 180.02562 * 17 16 15 19 19 C 1.35104 * 111.53555 * 179.97438 * 18 17 16 20 20 C 1.38997 * 132.28660 * 180.02562 * 19 18 17 21 21 C 1.37885 * 120.08381 * 180.02562 * 20 19 18 22 22 C 1.38586 * 120.60207 * 359.97438 * 21 20 19 23 23 C 1.37910 * 120.13945 * 359.97438 * 22 21 20 24 24 C 1.39087 * 119.73756 * 0.02562 * 23 22 21 25 25 C 1.40150 * 119.28021 * 0.02562 * 17 16 15 26 26 C 1.38370 * 119.98665 * 69.30562 * 14 13 11 27 27 H 0.96995 * 120.00341 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.47029 * 60.00562 * 10 9 7 29 29 H 1.08999 * 109.47544 * 300.00143 * 10 9 7 30 30 H 1.07994 * 119.73617 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.92250 * 180.26293 * 16 15 14 32 32 H 1.07999 * 119.95819 * 359.97438 * 20 19 18 33 33 H 1.07999 * 119.69490 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.93609 * 180.02562 * 22 21 20 35 35 H 1.07996 * 120.13189 * 180.02562 * 23 22 21 36 36 H 1.07995 * 120.15017 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7957 -5.5016 0.0011 13 8 2.8409 -6.3390 0.0018 14 6 2.3028 -7.5820 -0.1195 15 6 2.3350 -8.4613 0.9570 16 6 1.7880 -9.7217 0.8483 17 6 1.2013 -10.1281 -0.3446 18 8 0.6035 -11.2825 -0.7158 19 6 0.1717 -11.2284 -1.9949 20 6 -0.4867 -12.1509 -2.7995 21 6 -0.8150 -11.8250 -4.0984 22 6 -0.4951 -10.5798 -4.6158 23 6 0.1571 -9.6511 -3.8322 24 6 0.4931 -9.9693 -2.5206 25 6 1.1738 -9.2433 -1.4312 26 6 1.7287 -7.9733 -1.3161 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7314 0.8906 29 1 3.1246 -3.7314 -0.8894 30 1 2.7880 -8.1526 1.8874 31 1 1.8147 -10.3952 1.6921 32 1 -0.7407 -13.1245 -2.4070 33 1 -1.3270 -12.5465 -4.7179 34 1 -0.7578 -10.3358 -5.6346 35 1 0.4061 -8.6807 -4.2354 36 1 1.7064 -7.2935 -2.1549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032767648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:19 Heat of formation + Delta-G solvation = -46.641870 kcal Electronic energy + Delta-G solvation = -23291.819995 eV Core-core repulsion = 19605.331089 eV Total energy + Delta-G solvation = -3686.488905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.63216 -42.33484 -39.36232 -38.78121 -37.54488 -34.62033 -33.61875 -32.14518 -31.53284 -30.56085 -30.01617 -27.72816 -25.50254 -24.74671 -23.58980 -22.45303 -22.24415 -20.02927 -19.70375 -19.21867 -18.58683 -17.94410 -17.37655 -17.29661 -17.04047 -16.89995 -16.23773 -16.18651 -15.52548 -15.15613 -15.11394 -14.78910 -14.68204 -14.47990 -14.26381 -13.89404 -13.49454 -13.35435 -13.18891 -13.09058 -12.91211 -12.85938 -12.68135 -12.23421 -11.92722 -11.80344 -11.73645 -11.16821 -11.02784 -10.41082 -10.23672 -9.35472 -9.27425 -8.76106 -8.38559 -6.18821 -0.55592 -0.36506 0.32999 0.61008 0.94739 1.01165 1.37087 1.41784 1.43271 1.55240 1.79942 2.22463 2.39828 2.68306 2.96883 3.08066 3.24843 3.34822 3.47732 3.60142 3.87334 3.95409 4.08641 4.12453 4.14042 4.29682 4.37219 4.39775 4.40801 4.57766 4.74455 4.83121 4.90949 5.04931 5.11538 5.16672 5.30051 5.39355 5.40719 5.40961 5.65749 6.00546 6.17381 6.62786 7.03380 8.70671 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002398 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.809288 B =11674.814424 C =12546.084958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.089 0.911 9 S -0.137 6.137 10 C -0.105 4.105 11 C 0.484 3.516 12 O -0.502 6.502 13 O -0.280 6.280 14 C 0.049 3.951 15 C -0.079 4.079 16 C -0.088 4.088 17 C 0.068 3.932 18 O -0.205 6.205 19 C 0.058 3.942 20 C -0.117 4.117 21 C -0.073 4.073 22 C -0.131 4.131 23 C -0.080 4.080 24 C -0.150 4.150 25 C -0.126 4.126 26 C -0.083 4.083 27 H 0.273 0.727 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -25.151 -5.532 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.107 0.893 9 S 0.090 5.910 10 C -0.253 4.253 11 C 0.327 3.673 12 O -0.387 6.387 13 O -0.195 6.195 14 C 0.007 3.993 15 C -0.097 4.097 16 C -0.106 4.106 17 C 0.022 3.978 18 O -0.110 6.110 19 C 0.012 3.988 20 C -0.135 4.135 21 C -0.090 4.090 22 C -0.149 4.149 23 C -0.098 4.098 24 C -0.151 4.151 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.178 0.822 33 H 0.197 0.803 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.386 -25.542 -5.351 26.205 hybrid contribution 1.490 1.576 -0.034 2.169 sum 3.876 -23.965 -5.385 24.867 Atomic orbital electron populations 1.70166 1.07964 1.28822 1.47740 1.26130 0.95975 1.03323 0.93541 0.84924 0.78229 0.75843 0.78830 1.19301 1.20355 1.18068 1.23194 0.95592 0.91359 1.59281 0.89337 1.85614 1.08996 0.99138 1.97204 1.23121 1.04507 0.88753 1.08935 1.23604 0.84905 0.87155 0.71658 1.90709 1.18091 1.85489 1.44435 1.84683 1.38765 1.12775 1.83310 1.18587 1.01945 0.84264 0.94493 1.21212 0.98114 0.92116 0.98231 1.20194 0.98690 0.96624 0.95046 1.19943 0.97575 0.84135 0.96160 1.84011 1.64938 1.34603 1.27414 1.20085 0.99925 0.96174 0.82568 1.20487 1.00418 0.99320 0.93293 1.21510 0.96908 0.97193 0.93405 1.21515 0.98609 0.93365 1.01400 1.20870 0.97220 1.00910 0.90837 1.19581 1.04872 0.94695 0.95910 1.19320 1.03523 0.95058 0.94802 1.20650 0.96693 0.95049 0.97746 0.91848 0.85223 0.85443 0.80575 0.80135 0.82197 0.80349 0.81884 0.84948 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.59 13.22 21.65 0.29 -54.30 16 2 C 0.02 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 42.49 29.55 68.60 2.03 44.52 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.55 -30.16 9.50 67.95 0.65 -29.51 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.14 -7.30 20.58 -56.49 -1.16 -8.46 16 10 C -0.11 -4.09 6.27 71.24 0.45 -3.65 16 11 C 0.48 18.44 7.75 71.24 0.55 18.99 16 12 O -0.50 -22.73 15.28 21.96 0.34 -22.39 16 13 O -0.28 -8.96 10.04 3.98 0.04 -8.92 16 14 C 0.05 1.47 5.26 22.49 0.12 1.59 16 15 C -0.08 -1.85 9.95 22.36 0.22 -1.62 16 16 C -0.09 -1.87 10.05 22.36 0.22 -1.65 16 17 C 0.07 1.82 7.34 22.92 0.17 1.99 16 18 O -0.20 -5.33 10.58 -19.57 -0.21 -5.53 16 19 C 0.06 1.39 7.34 22.92 0.17 1.56 16 20 C -0.12 -1.88 10.06 22.37 0.23 -1.65 16 21 C -0.07 -0.86 10.01 22.27 0.22 -0.64 16 22 C -0.13 -1.89 10.04 22.28 0.22 -1.67 16 23 C -0.08 -1.72 10.08 22.40 0.23 -1.50 16 24 C -0.15 -3.99 6.38 -20.15 -0.13 -4.12 16 25 C -0.13 -3.74 6.38 -20.16 -0.13 -3.87 16 26 C -0.08 -2.57 9.37 22.50 0.21 -2.36 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.13 4.48 8.14 -2.39 -0.02 4.46 16 29 H 0.13 4.45 8.14 -2.40 -0.02 4.43 16 30 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -75.48 340.66 6.31 -69.17 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.12 Total: 12.73 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.86 Total: -26.80 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.29 Total: -54.30 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: 0.17 Total: -36.85 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.16 Total: -8.46 kcal Total: -75.48 6.31 -69.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032767648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.528 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds