Wall clock time and date at job start Tue Mar 31 2020 15:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86800 * 120.00096 * 2 1 4 4 H 1.48495 * 109.46757 * 275.41674 * 3 2 1 5 5 H 1.48502 * 109.46779 * 35.41624 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.41608 * 3 2 1 7 7 C 1.40005 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00171 * 341.74119 * 7 2 1 9 9 C 1.41023 * 120.00003 * 161.73878 * 7 2 1 10 10 C 1.40980 * 120.10423 * 330.08585 * 9 7 2 11 11 C 1.36230 * 119.92591 * 179.76384 * 10 9 7 12 12 C 1.39936 * 120.14199 * 0.51176 * 11 10 9 13 13 C 1.47971 * 119.89119 * 179.76078 * 12 11 10 14 14 C 1.39641 * 120.13115 * 309.72695 * 13 12 11 15 15 C 1.37926 * 119.89887 * 179.97438 * 14 13 12 16 16 C 1.38370 * 120.17313 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.86728 * 180.02562 * 16 15 14 18 18 F 1.39900 * 109.46988 * 359.97438 * 17 16 15 19 19 F 1.39900 * 109.47318 * 119.99822 * 17 16 15 20 20 F 1.39900 * 109.47203 * 239.99795 * 17 16 15 21 21 C 1.38595 * 120.27078 * 0.02562 * 16 15 14 22 22 F 1.35096 * 119.95580 * 180.02562 * 21 16 15 23 23 C 1.38179 * 120.09253 * 359.97438 * 21 16 15 24 24 C 1.40136 * 120.21075 * 359.48711 * 12 11 10 25 25 F 1.35102 * 119.96381 * 180.27904 * 24 12 11 26 26 C 1.36483 * 120.07328 * 0.25023 * 24 12 11 27 27 H 0.96997 * 119.99970 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.03019 * 0.04066 * 10 9 7 29 29 H 1.08000 * 119.92782 * 180.27811 * 11 10 9 30 30 H 1.07998 * 120.05198 * 359.97438 * 14 13 12 31 31 H 1.07995 * 119.91307 * 179.71731 * 15 14 13 32 32 H 1.08008 * 120.08914 * 179.97438 * 23 21 16 33 33 H 1.08000 * 120.07604 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3750 2.1124 -1.3938 5 1 1.5013 2.6169 0.8114 6 1 3.5921 1.4098 0.5825 7 6 2.0080 -1.2125 0.0005 8 1 1.5088 -2.1242 0.2940 9 6 3.3650 -1.2434 -0.3821 10 6 3.8573 -0.3107 -1.3177 11 6 5.1699 -0.3409 -1.6811 12 6 6.0281 -1.3023 -1.1360 13 6 7.4516 -1.3333 -1.5387 14 6 7.7977 -1.3260 -2.8915 15 6 9.1261 -1.3544 -3.2615 16 6 10.1164 -1.3897 -2.2957 17 6 11.5657 -1.4201 -2.7077 18 9 11.6540 -1.4066 -4.1039 19 9 12.2220 -0.2994 -2.1876 20 9 12.1666 -2.5831 -2.2142 21 6 9.7809 -1.3973 -0.9510 22 9 10.7530 -1.4313 -0.0135 23 6 8.4536 -1.3690 -0.5679 24 6 5.5449 -2.2323 -0.2055 25 9 6.3792 -3.1548 0.3219 26 6 4.2327 -2.2066 0.1688 27 1 -0.4850 0.8400 -0.0004 28 1 3.1955 0.4296 -1.7423 29 1 5.5480 0.3765 -2.3944 30 1 7.0264 -1.2980 -3.6469 31 1 9.3939 -1.3534 -4.3077 32 1 8.1922 -1.3753 0.4801 33 1 3.8602 -2.9235 0.8856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034051778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:49 Heat of formation + Delta-G solvation = -207.474674 kcal Electronic energy + Delta-G solvation = -26775.867354 eV Core-core repulsion = 21986.707088 eV Total energy + Delta-G solvation = -4789.160266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.24932 -49.02318 -48.17391 -47.71021 -47.64905 -39.25419 -37.71610 -34.21172 -32.68102 -30.76751 -30.07822 -29.72093 -26.79022 -24.60505 -23.09237 -22.23188 -21.59319 -20.74299 -18.62718 -18.54625 -18.47421 -18.09902 -17.25210 -16.33488 -15.95661 -15.72084 -15.35426 -15.28838 -15.04498 -14.83966 -14.60527 -14.52105 -14.32646 -14.11026 -13.87898 -13.83250 -13.51833 -13.35262 -13.20860 -13.11510 -12.58701 -12.34642 -12.25893 -11.90439 -11.71129 -11.35966 -11.25009 -11.01084 -10.65510 -10.20635 -9.97087 -9.63647 -9.16679 -8.85360 -8.08724 -7.71910 -7.38839 -4.91792 0.71474 1.16712 2.09300 2.30834 2.59341 2.85604 2.98802 3.06400 3.42920 3.63323 3.66762 3.88197 4.03517 4.14340 4.36050 4.73846 4.92168 4.99027 5.11644 5.17565 5.31002 5.63137 5.69159 5.81896 5.98816 6.07824 6.12444 6.28100 6.35665 6.53958 6.70966 6.74293 7.02809 7.08055 7.22777 7.45231 7.69274 7.90891 8.19019 8.32990 9.60258 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.003060 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.849907 B = 9147.900356 C = 9486.836849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.414 4.414 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.248 4.248 11 C -0.020 4.020 12 C -0.261 4.261 13 C 0.077 3.923 14 C -0.138 4.138 15 C -0.042 4.042 16 C -0.253 4.253 17 C 0.516 3.484 18 F -0.178 7.178 19 F -0.177 7.177 20 F -0.177 7.177 21 C 0.154 3.846 22 F -0.131 7.131 23 C -0.160 4.160 24 C 0.160 3.840 25 F -0.156 7.156 26 C -0.249 4.249 27 H 0.294 0.706 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.984 0.824 -4.930 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.440 4.440 8 H 0.117 0.883 9 C 0.111 3.889 10 C -0.267 4.267 11 C -0.039 4.039 12 C -0.263 4.263 13 C 0.077 3.923 14 C -0.156 4.156 15 C -0.061 4.061 16 C -0.255 4.255 17 C 0.462 3.538 18 F -0.159 7.159 19 F -0.158 7.158 20 F -0.158 7.158 21 C 0.134 3.866 22 F -0.109 7.109 23 C -0.179 4.179 24 C 0.141 3.859 25 F -0.135 7.135 26 C -0.269 4.269 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.778 0.867 -4.852 13.696 hybrid contribution 0.677 0.497 0.230 0.871 sum 13.456 1.364 -4.622 14.293 Atomic orbital electron populations 1.69657 1.08385 1.31392 1.30529 1.26382 0.94882 1.02438 0.90596 0.86208 0.81469 0.78796 0.79401 1.18996 1.21208 1.16263 1.19704 0.92898 0.96492 1.34916 0.88289 1.17536 0.92633 0.89909 0.88849 1.20782 0.95617 1.05511 1.04783 1.20211 0.92557 0.94977 0.96110 1.17805 0.91674 1.06131 1.10657 1.18813 0.92689 0.88981 0.91848 1.21388 0.95409 1.02820 0.95962 1.20753 0.91759 0.94751 0.98792 1.19885 0.92154 1.19387 0.94123 1.18073 0.87367 0.73892 0.74505 1.93147 1.96786 1.96270 1.29686 1.93215 1.83298 1.52715 1.86611 1.93218 1.85596 1.49446 1.87554 1.17154 0.85915 0.99438 0.84055 1.91534 1.61778 1.93405 1.64208 1.21350 0.89492 1.05284 1.01728 1.17227 0.87933 0.87349 0.93387 1.91394 1.72073 1.64777 1.85225 1.20662 0.91439 1.07183 1.07666 0.89530 0.87280 0.87423 0.84165 0.83976 0.83877 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.22 13.93 55.55 0.77 -17.44 16 2 C 0.08 1.84 5.40 -17.33 -0.09 1.75 16 3 Si 0.92 18.13 24.51 -169.99 -4.17 13.96 16 4 H -0.26 -5.00 6.70 56.52 0.38 -4.62 16 5 H -0.29 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.24 -4.90 6.87 56.52 0.39 -4.51 16 7 C -0.41 -9.81 9.55 -37.87 -0.36 -10.17 16 8 H 0.10 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.11 2.56 5.10 -106.81 -0.55 2.01 16 10 C -0.25 -5.13 7.11 -39.27 -0.28 -5.41 16 11 C -0.02 -0.37 9.44 -39.67 -0.37 -0.75 16 12 C -0.26 -4.86 5.50 -104.56 -0.58 -5.44 16 13 C 0.08 1.25 5.31 -104.89 -0.56 0.70 16 14 C -0.14 -1.88 9.51 -39.17 -0.37 -2.25 16 15 C -0.04 -0.53 9.41 -39.65 -0.37 -0.90 16 16 C -0.25 -3.52 5.39 -104.44 -0.56 -4.08 16 17 C 0.52 6.85 3.02 36.01 0.11 6.96 16 18 F -0.18 -2.15 15.96 2.25 0.04 -2.11 16 19 F -0.18 -2.44 17.04 2.25 0.04 -2.40 16 20 F -0.18 -2.46 17.04 2.25 0.04 -2.42 16 21 C 0.15 2.34 7.12 -39.47 -0.28 2.06 16 22 F -0.13 -2.02 16.44 2.25 0.04 -1.98 16 23 C -0.16 -2.54 8.84 -39.11 -0.35 -2.89 16 24 C 0.16 3.22 7.10 -39.50 -0.28 2.94 16 25 F -0.16 -3.03 15.86 2.25 0.04 -2.99 16 26 C -0.25 -5.30 9.70 -39.22 -0.38 -5.68 16 27 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 28 H 0.11 2.21 4.73 -52.49 -0.25 1.96 16 29 H 0.11 1.69 8.04 -52.49 -0.42 1.27 16 30 H 0.14 1.68 8.04 -52.49 -0.42 1.26 16 31 H 0.14 1.40 7.14 -52.49 -0.37 1.02 16 32 H 0.14 2.27 7.78 -52.48 -0.41 1.86 16 33 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -23.24 309.08 -5.71 -28.96 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -1.89 Total: 2.93 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -5.27 Total: -21.16 kcal Atomic # 7 Polarization: -18.22 SS G_CDS: 0.77 Total: -17.44 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 0.19 Total: -11.91 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -4.17 Total: 13.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -23.24 -5.71 -28.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034051778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.518 kcal (2) G-P(sol) polarization free energy of solvation -23.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds